RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 HMX1Q9NP08 348 aaPredicted RBP5□□□□□ -1.61
CSDE1-216ENST00000534389 ZNF777Q9ULD5 760 aaPredicted RBP5□□□□□ -1.61
CSDE1-216ENST00000534389 A6NJR5 290 aa4.99□□□□□ -1.61
CSDE1-216ENST00000534389 ARID3CA6NKF2 412 aa4.99□□□□□ -1.61
CSDE1-216ENST00000534389 WASHC4Q2M389 1173 aa4.99□□□□□ -1.61
CSDE1-216ENST00000534389 PPP1R18Q6NYC8 613 aa4.99□□□□□ -1.61
CSDE1-216ENST00000534389 CCDC97Q96F63 343 aaPredicted RBP4.99□□□□□ -1.61
CSDE1-216ENST00000534389 MAP10Q9P2G4 905 aa4.99□□□□□ -1.61
CSDE1-216ENST00000534389 FCF1Q9Y324 198 aaKnown RBP4.99□□□□□ -1.61
CSDE1-216ENST00000534389 RNF223E7ERA6 249 aa4.98□□□□□ -1.61
CSDE1-216ENST00000534389 PPEF1O14829 653 aaPredicted RBP4.98□□□□□ -1.61
CSDE1-216ENST00000534389 TRAK2O60296 914 aa4.98□□□□□ -1.61
CSDE1-216ENST00000534389 DXOO77932 396 aaKnown RBP4.98□□□□□ -1.61
CSDE1-216ENST00000534389 KCNH2Q12809 1159 aa4.98□□□□□ -1.61
CSDE1-216ENST00000534389 NBPF14Q5TI25 921 aa4.98□□□□□ -1.61
CSDE1-216ENST00000534389 CALR3Q96L12 384 aaKnown RBP4.98□□□□□ -1.61
CSDE1-216ENST00000534389 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.98□□□□□ -1.61
CSDE1-216ENST00000534389 SOCS7O14512 581 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 MMP16P51512 607 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 EIF4G2P78344 907 aaKnown RBP eCLIP4.97□□□□□ -1.61
CSDE1-216ENST00000534389 SEMA3FQ13275 785 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 EPS8L1Q8TE68 723 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 ZNF592Q92610 1267 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 EVA1BQ9NVM1 165 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 FKBPLQ9UIM3 349 aa4.97□□□□□ -1.61
CSDE1-216ENST00000534389 MAGEB6P1A0A0J9YX57 407 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 PTK2Q05397 1052 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 VAC14Q08AM6 782 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 ZBTB33Q86T24 672 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 GJD4Q96KN9 370 aaPredicted RBP4.96□□□□□ -1.62
CSDE1-216ENST00000534389 CARD14Q9BXL6 1004 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 UNC93B1Q9H1C4 597 aa4.96□□□□□ -1.62
CSDE1-216ENST00000534389 LINC01559Q495D7 138 aa4.95□□□□□ -1.62
CSDE1-216ENST00000534389 PLA2G2CQ5R387 149 aa4.95□□□□□ -1.62
CSDE1-216ENST00000534389 ANKLE1Q8NAG6 615 aa4.95□□□□□ -1.62
CSDE1-216ENST00000534389 ARHGAP9Q9BRR9 750 aa4.95□□□□□ -1.62
CSDE1-216ENST00000534389 DCAF1Q9Y4B6 1507 aa4.95□□□□□ -1.62
CSDE1-216ENST00000534389 ZC3H4Q9UPT8 1303 aaKnown RBP4.95□□□□□ -1.62
CSDE1-216ENST00000534389 ZBBXA8MT70 800 aa4.94□□□□□ -1.62
CSDE1-216ENST00000534389 CD2BP2O95400 341 aaKnown RBP4.94□□□□□ -1.62
CSDE1-216ENST00000534389 BAP1Q92560 729 aa4.94□□□□□ -1.62
CSDE1-216ENST00000534389 GPKOWQ92917 476 aaPredicted RBP eCLIP4.94□□□□□ -1.62
CSDE1-216ENST00000534389 TRIM34Q9BYJ4 488 aa4.94□□□□□ -1.62
CSDE1-216ENST00000534389 PCDHB9Q9Y5E1 797 aa4.94□□□□□ -1.62
CSDE1-216ENST00000534389 F12P00748 615 aaPredicted RBP4.93□□□□□ -1.62
CSDE1-216ENST00000534389 BPHLQ86WA6 291 aaPredicted RBP4.93□□□□□ -1.62
CSDE1-216ENST00000534389 DZIP3Q86Y13 1208 aaKnown RBP4.93□□□□□ -1.62
CSDE1-216ENST00000534389 GLMNQ92990 594 aa4.93□□□□□ -1.62
CSDE1-216ENST00000534389 SOX11P35716 441 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 NR1H3Q13133 447 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 HDGFL1Q5TGJ6 251 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 PDXDC2PQ6P474 469 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 EMID1Q96A84 441 aaPredicted RBP4.92□□□□□ -1.62
CSDE1-216ENST00000534389 SLC10A4Q96EP9 437 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 PRKD2Q9BZL6 878 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 ESF1Q9H501 851 aaKnown RBP4.92□□□□□ -1.62
CSDE1-216ENST00000534389 SERPINA10Q9UK55 444 aa4.92□□□□□ -1.62
CSDE1-216ENST00000534389 POM121CA8CG34 1229 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 FBXO45P0C2W1 286 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 ARID5BQ14865 1188 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 SLFNL1Q499Z3 407 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 PTCRAQ6ISU1 281 aaPredicted RBP4.91□□□□□ -1.62
CSDE1-216ENST00000534389 LIAT1Q6ZQX7 453 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 CCDC82Q8N4S0 544 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 EHBP1Q8NDI1 1231 aa4.91□□□□□ -1.62
CSDE1-216ENST00000534389 SLC19A1P41440 591 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 RAB15P59190 212 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 TRIM32Q13049 653 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 IRF5Q13568 498 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 ZNF511Q8NB15 262 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 GPSM3Q9Y4H4 160 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 CCDC180Q9P1Z9 1646 aa4.9□□□□□ -1.63
CSDE1-216ENST00000534389 ZEB1P37275 1124 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-216ENST00000534389 RPIAP49247 311 aa4.89□□□□□ -1.63
CSDE1-216ENST00000534389 MCCD1P59942 119 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-216ENST00000534389 TRIM26Q12899 539 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-216ENST00000534389 FNBP4Q8N3X1 1017 aaPredicted RBP4.89□□□□□ -1.63
CSDE1-216ENST00000534389 FAM174AQ8TBP5 190 aa4.89□□□□□ -1.63
CSDE1-216ENST00000534389 ADAM32Q8TC27 787 aa4.89□□□□□ -1.63
CSDE1-216ENST00000534389 LOC100996750A0A140TA64 210 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 RGS20O76081 388 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 RFX1P22670 979 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 NBPF20Q3BBV1 942 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 SPRYD7Q5W111 196 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 FOXJ1Q92949 421 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 TRIM52Q96A61 297 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 KRTAP4-6Q9BYQ5 205 aa4.88□□□□□ -1.63
CSDE1-216ENST00000534389 V9GY48 417 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-216ENST00000534389 WNT7BP56706 349 aa4.87□□□□□ -1.63
CSDE1-216ENST00000534389 SH3BP2P78314 561 aa4.87□□□□□ -1.63
CSDE1-216ENST00000534389 FOXC1Q12948 553 aa4.87□□□□□ -1.63
CSDE1-216ENST00000534389 ZNF697Q5TEC3 545 aa4.87□□□□□ -1.63
CSDE1-216ENST00000534389 VASH1Q7L8A9 365 aaPredicted RBP4.87□□□□□ -1.63
CSDE1-216ENST00000534389 CDV3Q9UKY7 258 aaKnown RBP4.87□□□□□ -1.63
CSDE1-216ENST00000534389 SKIP12755 728 aa4.86□□□□□ -1.63
CSDE1-216ENST00000534389 VARSP26640 1264 aaKnown RBP4.86□□□□□ -1.63
CSDE1-216ENST00000534389 LMOD1P29536 600 aaPredicted RBP4.86□□□□□ -1.63
CSDE1-216ENST00000534389 RNF20Q5VTR2 975 aa4.86□□□□□ -1.63
CSDE1-216ENST00000534389 ZNF598Q86UK7 904 aaKnown RBP4.86□□□□□ -1.63
CSDE1-216ENST00000534389 RNF135Q8IUD6 432 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms