RNA–Protein interactions for RNA: ENST00000531858.1

AC055878.1-201, humanhuman

TSL 3 BASIC

Gene AC055878.1, Length 281 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055878.1-201ENST00000531858 UCN2Q96RP3 112 aa6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 TRIM34Q9BYJ4 488 aa6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 KIAA1522Q9P206 1035 aaPredicted RBP6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 HPS5Q9UPZ3 1129 aa6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 V9GY48 417 aaPredicted RBP6.62□□□□□ -1.35
AC055878.1-201ENST00000531858 RCCD1A6NED2 376 aa6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 ATP9BO43861 1147 aa6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 SEMA3FQ13275 785 aa6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 LRCH3Q96II8 777 aa6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 SEPT9Q9UHD8 586 aaPredicted RBP6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 PCDHB15Q9Y5E8 787 aa6.61□□□□□ -1.35
AC055878.1-201ENST00000531858 CARNS1A5YM72 827 aa6.6□□□□□ -1.35
AC055878.1-201ENST00000531858 TCF3P15923 654 aa6.6□□□□□ -1.35
AC055878.1-201ENST00000531858 FAM98CQ17RN3 349 aaKnown RBP6.6□□□□□ -1.35
AC055878.1-201ENST00000531858 NFATC2IPQ8NCF5 419 aa6.6□□□□□ -1.35
AC055878.1-201ENST00000531858 DRC1Q96MC2 740 aa6.6□□□□□ -1.35
AC055878.1-201ENST00000531858 ZNF16P17020 682 aaPredicted RBP6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 DNAJB2P25686 324 aa6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 EIF4G2P78344 907 aaKnown RBP eCLIP6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 PRR7Q8TB68 274 aa6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 EYA1Q99502 592 aa6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 BCL11AQ9H165 835 aa6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 PDZRN3Q9UPQ7 1066 aa6.59□□□□□ -1.35
AC055878.1-201ENST00000531858 KDM4AO75164 1064 aa6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 NDUFV2P19404 249 aa6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 ZNF326Q5BKZ1 582 aaKnown RBP6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 KANK4Q5T7N3 995 aaPredicted RBP6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 SREK1Q8WXA9 508 aaKnown RBP6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 CDCA7LQ96GN5 454 aa6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 BCL2L13Q9BXK5 485 aa6.58□□□□□ -1.36
AC055878.1-201ENST00000531858 DDX11L8A8MPP1 907 aa6.57□□□□□ -1.36
AC055878.1-201ENST00000531858 SSFA2P28290 1259 aa6.57□□□□□ -1.36
AC055878.1-201ENST00000531858 CABLES1Q8TDN4 633 aa6.57□□□□□ -1.36
AC055878.1-201ENST00000531858 HMX1Q9NP08 348 aaPredicted RBP6.57□□□□□ -1.36
AC055878.1-201ENST00000531858 SOWAHDA6NJG2 315 aa6.56□□□□□ -1.36
AC055878.1-201ENST00000531858 FDX1P10109 184 aa6.56□□□□□ -1.36
AC055878.1-201ENST00000531858 CTDSPL2Q05D32 466 aa6.56□□□□□ -1.36
AC055878.1-201ENST00000531858 PPP4CP60510 307 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 CDCA8Q53HL2 280 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 TJAP1Q5JTD0 557 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 TMEM164Q5U3C3 297 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 PHLDB3Q6NSJ2 640 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 PPP1R18Q6NYC8 613 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 TBC1D9Q6ZT07 1266 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 PLEKHM2Q8IWE5 1019 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 SLF2Q8IX21 1173 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 TMEM134Q9H6X4 195 aa6.55□□□□□ -1.36
AC055878.1-201ENST00000531858 FAM196BA6NMK8 535 aa6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 TRIM6-TRIM34B2RNG4 842 aa6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 HOXA2O43364 376 aa6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 MARSP56192 900 aaKnown RBP6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 ZC3H6P61129 1189 aaKnown RBP6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 MTMR2Q13614 643 aa6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 SF3A1Q15459 793 aaKnown RBP6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 CLP1Q92989 425 aaKnown RBP6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 ZMIZ1Q9ULJ6 1067 aa6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 NOVA2Q9UNW9 492 aaKnown RBP6.54□□□□□ -1.36
AC055878.1-201ENST00000531858 UBXN4Q92575 508 aa6.53□□□□□ -1.36
AC055878.1-201ENST00000531858 ZNF592Q92610 1267 aa6.53□□□□□ -1.36
AC055878.1-201ENST00000531858 IL21Q9HBE4 155 aa6.53□□□□□ -1.36
AC055878.1-201ENST00000531858 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.53□□□□□ -1.36
AC055878.1-201ENST00000531858 NBPF26B4DH59 902 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 LZTS3O60299 673 aaPredicted RBP6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 NCLP19338 710 aaKnown RBP6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 GCGRP47871 477 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 COL19A1Q14993 1142 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 C1orf216Q8TAB5 229 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 GIPC2Q8TF65 315 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 SPATA32Q96LK8 384 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 MTRQ99707 1265 aa6.52□□□□□ -1.37
AC055878.1-201ENST00000531858 STK32AQ8WU08 396 aa6.51□□□□□ -1.37
AC055878.1-201ENST00000531858 CDCA7Q9BWT1 371 aaPredicted RBP6.51□□□□□ -1.37
AC055878.1-201ENST00000531858 EGFL7Q9UHF1 273 aa6.51□□□□□ -1.37
AC055878.1-201ENST00000531858 GGCXP38435 758 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 NR1H3Q13133 447 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 SWI5Q1ZZU3 235 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 GRIPAP1Q4V328 841 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 RNF135Q8IUD6 432 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 NPAS4Q8IUM7 802 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 RDH13Q8NBN7 331 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 LRRN4Q8WUT4 740 aa6.5□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L3A6NCW0 530 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L4A6NCW7 530 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 LARP1Q6PKG0 1096 aaKnown RBP6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L2Q6R6M4 530 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L1Q7RTZ2 530 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 FAM200AQ8TCP9 573 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 PCDHGC3Q9UN70 934 aa6.49□□□□□ -1.37
AC055878.1-201ENST00000531858 ANKRD33BA6NCL7 494 aa6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 ATP5J2-PTCD1G3V325 749 aa6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 EIF5BO60841 1220 aaKnown RBP6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 PKDCCQ504Y2 493 aa6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 NOM1Q5C9Z4 860 aaKnown RBP6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 PACS2Q86VP3 889 aa6.48□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L5A8MUK1 530 aa6.47□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L15C9J2P7 530 aa6.47□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L10C9JJH3 530 aa6.47□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L13C9JLJ4 530 aa6.47□□□□□ -1.37
AC055878.1-201ENST00000531858 USP17L12C9JPN9 530 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms