RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	YTHDC1	Q96MU7	727 aa	Known RBP	12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	USP6	P35125	1406 aa		12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	CPSF1	Q10570	1443 aa	Known RBP	12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	SBNO1	A3KN83	1393 aa		12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	ANKRD36B	Q8N2N9	1353 aa		12.93	□□□□□ -0.34
NXF1-209	ENST00000531474	TNS3	Q68CZ2	1445 aa		12.92	□□□□□ -0.34
NXF1-209	ENST00000531474	LMOD2	Q6P5Q4	547 aa		12.92	□□□□□ -0.34
NXF1-209	ENST00000531474	LRRC59	Q96AG4	307 aa	Known RBP	12.92	□□□□□ -0.34
NXF1-209	ENST00000531474	ZNF692	Q9BU19	519 aa	Predicted RBP	12.92	□□□□□ -0.34
NXF1-209	ENST00000531474	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.91	□□□□□ -0.34
NXF1-209	ENST00000531474	SPATA31A3	Q5VYP0	1347 aa		12.9	□□□□□ -0.34
NXF1-209	ENST00000531474	AKAP12	Q02952	1782 aa		12.9	□□□□□ -0.34
NXF1-209	ENST00000531474	JCAD	Q9P266	1359 aa		12.9	□□□□□ -0.34
NXF1-209	ENST00000531474	TTC21B	Q7Z4L5	1316 aa		12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	EDC4	Q6P2E9	1401 aa	Known RBP	12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	MON2	Q7Z3U7	1717 aa		12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	PLEKHG5	O94827	1062 aa		12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	ARHGEF10	O15013	1369 aa		12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	BRD4	O60885	1362 aa	Predicted RBP	12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	PNPLA6	Q8IY17	1366 aa		12.89	□□□□□ -0.35
NXF1-209	ENST00000531474	SSH2	Q76I76	1423 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	NUTM2G	Q5VZR2	741 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	PANK3	Q9H999	370 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	NRK	Q7Z2Y5	1582 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	NSD3	Q9BZ95	1437 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	TTC21A	Q8NDW8	1320 aa		12.88	□□□□□ -0.35
NXF1-209	ENST00000531474	ABTB2	Q8N961	1025 aa		12.87	□□□□□ -0.35
NXF1-209	ENST00000531474	SHPRH	Q149N8	1683 aa		12.86	□□□□□ -0.35
NXF1-209	ENST00000531474	ALS2	Q96Q42	1657 aa		12.86	□□□□□ -0.35
NXF1-209	ENST00000531474	CARD14	Q9BXL6	1004 aa		12.86	□□□□□ -0.35
NXF1-209	ENST00000531474	ADRA2B	P18089	450 aa		12.85	□□□□□ -0.35
NXF1-209	ENST00000531474	NME9	Q86XW9	330 aa		12.85	□□□□□ -0.35
NXF1-209	ENST00000531474	PIK3C2A	O00443	1686 aa		12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	NUTM2E	B1AL46	878 aa	Predicted RBP	12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	HAP1	P54257	671 aa	Predicted RBP	12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	NLRP6	P59044	892 aa		12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	SPATA31A6	Q5VVP1	1343 aa		12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.84	□□□□□ -0.35
NXF1-209	ENST00000531474	MED1	Q15648	1581 aa	Predicted RBP	12.83	□□□□□ -0.36
NXF1-209	ENST00000531474	CABLES1	Q8TDN4	633 aa		12.83	□□□□□ -0.36
NXF1-209	ENST00000531474	ZRANB1	Q9UGI0	708 aa		12.83	□□□□□ -0.36
NXF1-209	ENST00000531474	CGNL1	Q0VF96	1302 aa		12.83	□□□□□ -0.36
NXF1-209	ENST00000531474	NLRP13	Q86W25	1043 aa		12.82	□□□□□ -0.36
NXF1-209	ENST00000531474	KNSTRN	Q9Y448	316 aa		12.82	□□□□□ -0.36
NXF1-209	ENST00000531474	GGNBP2	Q9H3C7	697 aa		12.81	□□□□□ -0.36
NXF1-209	ENST00000531474	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.81	□□□□□ -0.36
NXF1-209	ENST00000531474	USP19	O94966	1318 aa		12.81	□□□□□ -0.36
NXF1-209	ENST00000531474	USP31	Q70CQ4	1352 aa		12.81	□□□□□ -0.36
NXF1-209	ENST00000531474	LRP6	O75581	1613 aa		12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	FYB1	O15117	783 aa		12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	SOX12	O15370	315 aa		12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	ADAMTS2	O95450	1211 aa		12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	MEX3C	Q5U5Q3	659 aa	Known RBP	12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	COG3	Q96JB2	828 aa		12.8	□□□□□ -0.36
NXF1-209	ENST00000531474	OVOS2	A0A0J9YW53	1432 aa		12.79	□□□□□ -0.36
NXF1-209	ENST00000531474	OVOS2	Q6IE36	1432 aa		12.79	□□□□□ -0.36
NXF1-209	ENST00000531474	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.79	□□□□□ -0.36
NXF1-209	ENST00000531474	ABCA3	Q99758	1704 aa		12.79	□□□□□ -0.36
NXF1-209	ENST00000531474	KIF20B	Q96Q89	1820 aa		12.78	□□□□□ -0.36
NXF1-209	ENST00000531474	SLIT3	O75094	1523 aa		12.78	□□□□□ -0.36
NXF1-209	ENST00000531474	CNGB1	Q14028	1251 aa	Predicted RBP	12.78	□□□□□ -0.36
NXF1-209	ENST00000531474	GTF3C3	Q9Y5Q9	886 aa		12.78	□□□□□ -0.36
NXF1-209	ENST00000531474	CRYBG1	Q9Y4K1	1723 aa		12.78	□□□□□ -0.36
NXF1-209	ENST00000531474	ZBTB7C	A1YPR0	619 aa		12.77	□□□□□ -0.37
NXF1-209	ENST00000531474	PER1	O15534	1290 aa	Predicted RBP	12.77	□□□□□ -0.37
NXF1-209	ENST00000531474	GC	P02774	474 aa		12.77	□□□□□ -0.37
NXF1-209	ENST00000531474	NSD2	O96028	1365 aa		12.77	□□□□□ -0.37
NXF1-209	ENST00000531474	USP54	Q70EL1	1684 aa		12.77	□□□□□ -0.37
NXF1-209	ENST00000531474	MARF1	Q9Y4F3	1742 aa	Known RBP	12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	ZC3H6	P61129	1189 aa	Known RBP	12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	CC2D1B	Q5T0F9	858 aa	Known RBP	12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	KCNH5	Q8NCM2	988 aa		12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	C8orf37	Q96NL8	207 aa		12.76	□□□□□ -0.37
NXF1-209	ENST00000531474	NFAT5	O94916	1531 aa		12.75	□□□□□ -0.37
NXF1-209	ENST00000531474	RALBP1	Q15311	655 aa		12.75	□□□□□ -0.37
NXF1-209	ENST00000531474	KIAA0232	Q92628	1395 aa		12.75	□□□□□ -0.37
NXF1-209	ENST00000531474	PRDM11	Q9NQV5	511 aa		12.75	□□□□□ -0.37
NXF1-209	ENST00000531474	TNNT2	P45379	298 aa	Predicted RBP	12.74	□□□□□ -0.37
NXF1-209	ENST00000531474	MORC1	Q86VD1	984 aa		12.74	□□□□□ -0.37
NXF1-209	ENST00000531474	CPD	O75976	1380 aa		12.73	□□□□□ -0.37
NXF1-209	ENST00000531474	CHRNA2	Q15822	529 aa		12.73	□□□□□ -0.37
NXF1-209	ENST00000531474	POTED	Q86YR6	584 aa		12.73	□□□□□ -0.37
NXF1-209	ENST00000531474	NGLY1	Q96IV0	654 aa		12.73	□□□□□ -0.37
NXF1-209	ENST00000531474	ANKRD26	Q9UPS8	1709 aa		12.73	□□□□□ -0.37
NXF1-209	ENST00000531474	NPC1L1	Q9UHC9	1359 aa		12.72	□□□□□ -0.37
NXF1-209	ENST00000531474	FAM83G	A6ND36	823 aa		12.72	□□□□□ -0.37
NXF1-209	ENST00000531474	FBLN1	P23142	703 aa		12.72	□□□□□ -0.37
NXF1-209	ENST00000531474	RRS1	Q15050	365 aa	Known RBP	12.71	□□□□□ -0.37
NXF1-209	ENST00000531474	ARHGEF25	Q86VW2	580 aa		12.71	□□□□□ -0.37
NXF1-209	ENST00000531474	AFF2	P51816	1311 aa		12.7	□□□□□ -0.38
NXF1-209	ENST00000531474	MRS2	Q9HD23	443 aa		12.7	□□□□□ -0.38
NXF1-209	ENST00000531474	COL14A1	Q05707	1796 aa	Known RBP	12.7	□□□□□ -0.38
NXF1-209	ENST00000531474	AATK	Q6ZMQ8	1374 aa		12.69	□□□□□ -0.38
NXF1-209	ENST00000531474	MAP3K19	Q56UN5	1328 aa		12.69	□□□□□ -0.38
NXF1-209	ENST00000531474	AMPH	P49418	695 aa		12.69	□□□□□ -0.38
NXF1-209	ENST00000531474	BTG4	Q9NY30	223 aa		12.69	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms