RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 KNDC1Q76NI1 1749 aa13.6□□□□□ -0.23
NEDD8-206ENST00000531430 SPATA31A5Q5VU36 1347 aa13.6□□□□□ -0.23
NEDD8-206ENST00000531430 SPATA31A7Q8IWB4 1347 aa13.6□□□□□ -0.23
NEDD8-206ENST00000531430 ACIN1Q9UKV3 1341 aaKnown RBP13.6□□□□□ -0.23
NEDD8-206ENST00000531430 PLCH1Q4KWH8 1693 aa13.59□□□□□ -0.23
NEDD8-206ENST00000531430 IFT172Q9UG01 1749 aa13.59□□□□□ -0.23
NEDD8-206ENST00000531430 WASLO00401 505 aaPredicted RBP13.59□□□□□ -0.23
NEDD8-206ENST00000531430 DCAF11Q8TEB1 546 aa13.59□□□□□ -0.23
NEDD8-206ENST00000531430 LRP5O75197 1615 aa13.58□□□□□ -0.24
NEDD8-206ENST00000531430 PDE3BQ13370 1112 aa13.58□□□□□ -0.24
NEDD8-206ENST00000531430 NWD2Q9ULI1 1742 aa13.58□□□□□ -0.24
NEDD8-206ENST00000531430 FAM196AQ6ZSG2 479 aa13.57□□□□□ -0.24
NEDD8-206ENST00000531430 PRR36Q9H6K5 1346 aa13.57□□□□□ -0.24
NEDD8-206ENST00000531430 ANKARQ7Z5J8 1434 aa13.56□□□□□ -0.24
NEDD8-206ENST00000531430 ZBTB7CA1YPR0 619 aa13.55□□□□□ -0.24
NEDD8-206ENST00000531430 NBPF8Q3BBV2 869 aa13.55□□□□□ -0.24
NEDD8-206ENST00000531430 NBPF14Q5TI25 921 aa13.55□□□□□ -0.24
NEDD8-206ENST00000531430 NUDT16Q96DE0 195 aaKnown RBP13.55□□□□□ -0.24
NEDD8-206ENST00000531430 CAMKK2Q96RR4 588 aa13.54□□□□□ -0.24
NEDD8-206ENST00000531430 SPATA31A1Q5TZJ5 1347 aa13.54□□□□□ -0.24
NEDD8-206ENST00000531430 EIF3AQ14152 1382 aaKnown RBP13.54□□□□□ -0.24
NEDD8-206ENST00000531430 KIAA0232Q92628 1395 aa13.54□□□□□ -0.24
NEDD8-206ENST00000531430 CDK19Q9BWU1 502 aa13.53□□□□□ -0.24
NEDD8-206ENST00000531430 PPP1R1BQ9UD71 204 aaPredicted RBP13.53□□□□□ -0.24
NEDD8-206ENST00000531430 DCAF8L1A6NGE4 600 aa13.52□□□□□ -0.25
NEDD8-206ENST00000531430 ABTB2Q8N961 1025 aa13.52□□□□□ -0.25
NEDD8-206ENST00000531430 COL14A1Q05707 1796 aaKnown RBP13.52□□□□□ -0.25
NEDD8-206ENST00000531430 ABCA3Q99758 1704 aa13.51□□□□□ -0.25
NEDD8-206ENST00000531430 YY1P25490 414 aa13.51□□□□□ -0.25
NEDD8-206ENST00000531430 LARP1Q6PKG0 1096 aaKnown RBP13.5□□□□□ -0.25
NEDD8-206ENST00000531430 DLC1Q96QB1 1528 aa13.49□□□□□ -0.25
NEDD8-206ENST00000531430 ACEP12821 1306 aa13.49□□□□□ -0.25
NEDD8-206ENST00000531430 RGPD1P0DJD0 1748 aa13.49□□□□□ -0.25
NEDD8-206ENST00000531430 NRAPQ86VF7 1730 aa13.49□□□□□ -0.25
NEDD8-206ENST00000531430 TCP11L2Q8N4U5 519 aa13.48□□□□□ -0.25
NEDD8-206ENST00000531430 TRPM3Q9HCF6 1732 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-206ENST00000531430 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
NEDD8-206ENST00000531430 TULP4Q9NRJ4 1543 aa13.47□□□□□ -0.25
NEDD8-206ENST00000531430 BARGINQ6ZT62 677 aa13.46□□□□□ -0.25
NEDD8-206ENST00000531430 SPON1Q9HCB6 807 aa13.46□□□□□ -0.25
NEDD8-206ENST00000531430 ALS2Q96Q42 1657 aa13.46□□□□□ -0.26
NEDD8-206ENST00000531430 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
NEDD8-206ENST00000531430 SRPK2P78362 688 aaKnown RBP13.45□□□□□ -0.26
NEDD8-206ENST00000531430 NLRP13Q86W25 1043 aa13.45□□□□□ -0.26
NEDD8-206ENST00000531430 KCNQ2O43526 872 aa13.44□□□□□ -0.26
NEDD8-206ENST00000531430 ADGRB1O14514 1584 aa13.44□□□□□ -0.26
NEDD8-206ENST00000531430 ADGRB2O60241 1585 aa13.44□□□□□ -0.26
NEDD8-206ENST00000531430 DISP2A7MBM2 1401 aa13.43□□□□□ -0.26
NEDD8-206ENST00000531430 GCP02774 474 aa13.43□□□□□ -0.26
NEDD8-206ENST00000531430 SSH2Q76I76 1423 aa13.43□□□□□ -0.26
NEDD8-206ENST00000531430 STAC3Q96MF2 364 aa13.43□□□□□ -0.26
NEDD8-206ENST00000531430 NLRP6P59044 892 aa13.42□□□□□ -0.26
NEDD8-206ENST00000531430 CABP2Q9NPB3 220 aa13.42□□□□□ -0.26
NEDD8-206ENST00000531430 THRAP3Q9Y2W1 955 aaKnown RBP13.42□□□□□ -0.26
NEDD8-206ENST00000531430 THSD7AQ9UPZ6 1657 aa13.42□□□□□ -0.26
NEDD8-206ENST00000531430 PARD3Q8TEW0 1356 aa13.42□□□□□ -0.26
NEDD8-206ENST00000531430 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
NEDD8-206ENST00000531430 TOM1L2Q6ZVM7 507 aa13.41□□□□□ -0.26
NEDD8-206ENST00000531430 BCL11BQ9C0K0 894 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-206ENST00000531430 TNS1Q9HBL0 1735 aaKnown RBP13.41□□□□□ -0.26
NEDD8-206ENST00000531430 SOX12O15370 315 aa13.4□□□□□ -0.26
NEDD8-206ENST00000531430 DDB1Q16531 1140 aa13.4□□□□□ -0.26
NEDD8-206ENST00000531430 NBPF1Q3BBV0 1214 aa13.4□□□□□ -0.26
NEDD8-206ENST00000531430 CABP1Q9NZU7 370 aa13.39□□□□□ -0.27
NEDD8-206ENST00000531430 ATP7BP35670 1465 aa13.39□□□□□ -0.27
NEDD8-206ENST00000531430 CAMTA1Q9Y6Y1 1673 aa13.39□□□□□ -0.27
NEDD8-206ENST00000531430 ZBTB7AO95365 584 aa13.38□□□□□ -0.27
NEDD8-206ENST00000531430 CSB-PGBD3P0DP91 1061 aa13.38□□□□□ -0.27
NEDD8-206ENST00000531430 ATF5Q9Y2D1 282 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-206ENST00000531430 POLR3AO14802 1390 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-206ENST00000531430 C11orf95C9JLR9 678 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-206ENST00000531430 PTF1AQ7RTS3 328 aa13.37□□□□□ -0.27
NEDD8-206ENST00000531430 ITSN1Q15811 1721 aa13.36□□□□□ -0.27
NEDD8-206ENST00000531430 CRYBG1Q9Y4K1 1723 aa13.36□□□□□ -0.27
NEDD8-206ENST00000531430 PHRF1Q9P1Y6 1649 aaKnown RBP13.36□□□□□ -0.27
NEDD8-206ENST00000531430 PPIP5K1Q6PFW1 1433 aa13.36□□□□□ -0.27
NEDD8-206ENST00000531430 CPDO75976 1380 aa13.35□□□□□ -0.27
NEDD8-206ENST00000531430 PLSCR1O15162 318 aa13.35□□□□□ -0.27
NEDD8-206ENST00000531430 PDGFDQ9GZP0 370 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-206ENST00000531430 CENPJQ9HC77 1338 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-206ENST00000531430 ANO8Q9HCE9 1232 aaPredicted RBP13.34□□□□□ -0.27
NEDD8-206ENST00000531430 STK32BQ9NY57 414 aa13.34□□□□□ -0.27
NEDD8-206ENST00000531430 USP19O94966 1318 aa13.34□□□□□ -0.27
NEDD8-206ENST00000531430 CRB1P82279 1406 aa13.33□□□□□ -0.28
NEDD8-206ENST00000531430 EXOC5O00471 708 aa13.33□□□□□ -0.28
NEDD8-206ENST00000531430 MARCH10Q8NA82 808 aaPredicted RBP13.33□□□□□ -0.28
NEDD8-206ENST00000531430 AXIN2Q9Y2T1 843 aa13.33□□□□□ -0.28
NEDD8-206ENST00000531430 ARHGEF28Q8N1W1 1705 aaKnown RBP13.33□□□□□ -0.28
NEDD8-206ENST00000531430 OVOS2A0A0G2JMS6 1433 aa13.32□□□□□ -0.28
NEDD8-206ENST00000531430 OVOS2A0A0J9YW53 1432 aa13.32□□□□□ -0.28
NEDD8-206ENST00000531430 OVOS2Q6IE36 1432 aa13.32□□□□□ -0.28
NEDD8-206ENST00000531430 PROM2Q8N271 834 aa13.32□□□□□ -0.28
NEDD8-206ENST00000531430 COL5A2P05997 1499 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-206ENST00000531430 NUP188Q5SRE5 1749 aa13.31□□□□□ -0.28
NEDD8-206ENST00000531430 NRKQ7Z2Y5 1582 aa13.3□□□□□ -0.28
NEDD8-206ENST00000531430 TXNRD1Q16881 649 aa13.3□□□□□ -0.28
NEDD8-206ENST00000531430 RREB1Q92766 1687 aa13.3□□□□□ -0.28
NEDD8-206ENST00000531430 AATKQ6ZMQ8 1374 aa13.3□□□□□ -0.28
NEDD8-206ENST00000531430 NINLQ9Y2I6 1382 aa13.3□□□□□ -0.28
NEDD8-206ENST00000531430 ACSBG1Q96GR2 724 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms