RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 COL14A1Q05707 1796 aaKnown RBP22.82■■□□□ 1.24
CPSF1-205ENST00000531042 CCDC125Q86Z20 511 aa22.82■■□□□ 1.24
CPSF1-205ENST00000531042 CCDC9Q9Y3X0 531 aaKnown RBP22.82■■□□□ 1.24
CPSF1-205ENST00000531042 ONECUT3O60422 494 aaPredicted RBP22.81■■□□□ 1.24
CPSF1-205ENST00000531042 SEPT12Q8IYM1 358 aa22.81■■□□□ 1.24
CPSF1-205ENST00000531042 POLR3AO14802 1390 aaPredicted RBP22.8■■□□□ 1.24
CPSF1-205ENST00000531042 BTG4Q9NY30 223 aa22.8■■□□□ 1.24
CPSF1-205ENST00000531042 CCDC61Q9Y6R9 512 aa22.8■■□□□ 1.24
CPSF1-205ENST00000531042 L3MBTL2Q969R5 705 aa22.79■■□□□ 1.24
CPSF1-205ENST00000531042 ACEP12821 1306 aa22.79■■□□□ 1.24
CPSF1-205ENST00000531042 PLEKHG3A1L390 1219 aa22.78■■□□□ 1.24
CPSF1-205ENST00000531042 CENPJQ9HC77 1338 aaPredicted RBP22.78■■□□□ 1.24
CPSF1-205ENST00000531042 NBPF8Q3BBV2 869 aa22.77■■□□□ 1.24
CPSF1-205ENST00000531042 SIN3AQ96ST3 1273 aa22.77■■□□□ 1.24
CPSF1-205ENST00000531042 PHRF1Q9P1Y6 1649 aaKnown RBP22.75■■□□□ 1.23
CPSF1-205ENST00000531042 QRICH2Q9H0J4 1663 aa22.74■■□□□ 1.23
CPSF1-205ENST00000531042 BLMP54132 1417 aaPredicted RBP22.74■■□□□ 1.23
CPSF1-205ENST00000531042 SRPK2P78362 688 aaKnown RBP22.73■■□□□ 1.23
CPSF1-205ENST00000531042 PRDM11Q9NQV5 511 aa22.73■■□□□ 1.23
CPSF1-205ENST00000531042 TRPM1Q7Z4N2 1603 aa22.72■■□□□ 1.23
CPSF1-205ENST00000531042 NUTM2GQ5VZR2 741 aa22.72■■□□□ 1.23
CPSF1-205ENST00000531042 KRT27Q7Z3Y8 459 aa22.72■■□□□ 1.23
CPSF1-205ENST00000531042 NEUROD1Q13562 356 aa22.71■■□□□ 1.23
CPSF1-205ENST00000531042 FAM98CQ17RN3 349 aaKnown RBP22.71■■□□□ 1.23
CPSF1-205ENST00000531042 CABP2Q9NPB3 220 aa22.71■■□□□ 1.23
CPSF1-205ENST00000531042 KIAA0232Q92628 1395 aa22.71■■□□□ 1.23
CPSF1-205ENST00000531042 PPIP5K1Q6PFW1 1433 aa22.71■■□□□ 1.23
CPSF1-205ENST00000531042 SPATA31A5Q5VU36 1347 aa22.7■■□□□ 1.22
CPSF1-205ENST00000531042 SPATA31A7Q8IWB4 1347 aa22.7■■□□□ 1.22
CPSF1-205ENST00000531042 A0A0G2JS52 829 aa22.69■■□□□ 1.22
CPSF1-205ENST00000531042 MYT1Q01538 1121 aa22.69■■□□□ 1.22
CPSF1-205ENST00000531042 ZC3H6P61129 1189 aaKnown RBP22.68■■□□□ 1.22
CPSF1-205ENST00000531042 CHRNA2Q15822 529 aa22.68■■□□□ 1.22
CPSF1-205ENST00000531042 ABTB2Q8N961 1025 aa22.68■■□□□ 1.22
CPSF1-205ENST00000531042 ZRANB1Q9UGI0 708 aa22.68■■□□□ 1.22
CPSF1-205ENST00000531042 NRKQ7Z2Y5 1582 aa22.66■■□□□ 1.22
CPSF1-205ENST00000531042 SF3B2Q13435 895 aaKnown RBP22.65■■□□□ 1.22
CPSF1-205ENST00000531042 THSD7AQ9UPZ6 1657 aa22.65■■□□□ 1.22
CPSF1-205ENST00000531042 ROCK2O75116 1388 aaKnown RBP22.64■■□□□ 1.22
CPSF1-205ENST00000531042 USP19O94966 1318 aa22.64■■□□□ 1.22
CPSF1-205ENST00000531042 DEFB132Q7Z7B7 95 aa22.64■■□□□ 1.21
CPSF1-205ENST00000531042 CABP1Q9NZU7 370 aa22.64■■□□□ 1.21
CPSF1-205ENST00000531042 BRD4O60885 1362 aaPredicted RBP22.63■■□□□ 1.21
CPSF1-205ENST00000531042 SPATA31A1Q5TZJ5 1347 aa22.63■■□□□ 1.21
CPSF1-205ENST00000531042 EVC2Q86UK5 1308 aa22.62■■□□□ 1.21
CPSF1-205ENST00000531042 SRCAPQ6ZRS2 3230 aa22.62■■□□□ 1.21
CPSF1-205ENST00000531042 NLRP13Q86W25 1043 aa22.62■■□□□ 1.21
CPSF1-205ENST00000531042 STRN4Q9NRL3 753 aa22.62■■□□□ 1.21
CPSF1-205ENST00000531042 CPDO75976 1380 aa22.61■■□□□ 1.21
CPSF1-205ENST00000531042 USP6P35125 1406 aa22.6■■□□□ 1.21
CPSF1-205ENST00000531042 LMO7Q8WWI1 1683 aa22.59■■□□□ 1.21
CPSF1-205ENST00000531042 CAMTA1Q9Y6Y1 1673 aa22.59■■□□□ 1.21
CPSF1-205ENST00000531042 GCP02774 474 aa22.59■■□□□ 1.21
CPSF1-205ENST00000531042 SSH2Q76I76 1423 aa22.58■■□□□ 1.21
CPSF1-205ENST00000531042 EVA1CP58658 441 aa22.58■■□□□ 1.21
CPSF1-205ENST00000531042 FAM182BQ5T319 152 aa22.57■■□□□ 1.2
CPSF1-205ENST00000531042 RGPD1P0DJD0 1748 aa22.55■■□□□ 1.2
CPSF1-205ENST00000531042 BAG6P46379 1132 aa22.55■■□□□ 1.2
CPSF1-205ENST00000531042 USP35Q9P2H5 1018 aa22.55■■□□□ 1.2
CPSF1-205ENST00000531042 NLRP6P59044 892 aa22.54■■□□□ 1.2
CPSF1-205ENST00000531042 LARP1Q6PKG0 1096 aaKnown RBP22.54■■□□□ 1.2
CPSF1-205ENST00000531042 BARGINQ6ZT62 677 aa22.54■■□□□ 1.2
CPSF1-205ENST00000531042 SLIT3O75094 1523 aa22.53■■□□□ 1.2
CPSF1-205ENST00000531042 PIK3C2AO00443 1686 aa22.53■■□□□ 1.2
CPSF1-205ENST00000531042 AKAP12Q02952 1782 aa22.53■■□□□ 1.2
CPSF1-205ENST00000531042 ZNF692Q9BU19 519 aaPredicted RBP22.52■■□□□ 1.2
CPSF1-205ENST00000531042 COL5A2P05997 1499 aaPredicted RBP22.5■■□□□ 1.19
CPSF1-205ENST00000531042 TCP11L2Q8N4U5 519 aa22.5■■□□□ 1.19
CPSF1-205ENST00000531042 TNS1Q9HBL0 1735 aaKnown RBP22.5■■□□□ 1.19
CPSF1-205ENST00000531042 CARD11Q9BXL7 1154 aa22.49■■□□□ 1.19
CPSF1-205ENST00000531042 TTC21BQ7Z4L5 1316 aa22.49■■□□□ 1.19
CPSF1-205ENST00000531042 SBNO2Q9Y2G9 1366 aa22.49■■□□□ 1.19
CPSF1-205ENST00000531042 EN1Q05925 392 aaPredicted RBP22.48■■□□□ 1.19
CPSF1-205ENST00000531042 FAM196AQ6ZSG2 479 aa22.48■■□□□ 1.19
CPSF1-205ENST00000531042 THRAP3Q9Y2W1 955 aaKnown RBP22.48■■□□□ 1.19
CPSF1-205ENST00000531042 AATKQ6ZMQ8 1374 aa22.48■■□□□ 1.19
CPSF1-205ENST00000531042 TONSLQ96HA7 1378 aa22.48■■□□□ 1.19
CPSF1-205ENST00000531042 CPSF1Q10570 1443 aaKnown RBP22.48■■□□□ 1.19
CPSF1-205ENST00000531042 ZBTB7CA1YPR0 619 aa22.47■■□□□ 1.19
CPSF1-205ENST00000531042 DISP2A7MBM2 1401 aa22.47■■□□□ 1.19
CPSF1-205ENST00000531042 COL18A1P39060 1754 aa22.46■■□□□ 1.19
CPSF1-205ENST00000531042 PDE3BQ13370 1112 aa22.46■■□□□ 1.19
CPSF1-205ENST00000531042 TTC21AQ8NDW8 1320 aa22.45■■□□□ 1.18
CPSF1-205ENST00000531042 CRB1P82279 1406 aa22.45■■□□□ 1.18
CPSF1-205ENST00000531042 TRIM37O94972 964 aa22.44■■□□□ 1.18
CPSF1-205ENST00000531042 KTN1Q86UP2 1357 aaKnown RBP22.44■■□□□ 1.18
CPSF1-205ENST00000531042 PARP4Q9UKK3 1724 aaKnown RBP22.44■■□□□ 1.18
CPSF1-205ENST00000531042 MON2Q7Z3U7 1717 aa22.43■■□□□ 1.18
CPSF1-205ENST00000531042 KCNH5Q8NCM2 988 aa22.42■■□□□ 1.18
CPSF1-205ENST00000531042 ARHGEF25Q86VW2 580 aa22.41■■□□□ 1.18
CPSF1-205ENST00000531042 AXIN2Q9Y2T1 843 aa22.41■■□□□ 1.18
CPSF1-205ENST00000531042 PSDA5PKW4 1024 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-205ENST00000531042 TRIM26Q12899 539 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-205ENST00000531042 EZH2Q15910 746 aaKnown RBP22.4■■□□□ 1.18
CPSF1-205ENST00000531042 CAMKK2Q96RR4 588 aa22.39■■□□□ 1.17
CPSF1-205ENST00000531042 RGPD5Q99666 1765 aa22.39■■□□□ 1.17
CPSF1-205ENST00000531042 CD163L1Q9NR16 1453 aa22.39■■□□□ 1.17
CPSF1-205ENST00000531042 NFAT5O94916 1531 aa22.38■■□□□ 1.17
CPSF1-205ENST00000531042 SOX12O15370 315 aa22.38■■□□□ 1.17
CPSF1-205ENST00000531042 APBA3O96018 575 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms