RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SRCAPQ6ZRS2 3230 aa16.54■□□□□ 0.24
VPS28-214ENST00000531032 NGDNQ8NEJ9 315 aaKnown RBP16.54■□□□□ 0.24
VPS28-214ENST00000531032 NUDT16Q96DE0 195 aaKnown RBP16.53■□□□□ 0.24
VPS28-214ENST00000531032 CCDC9Q9Y3X0 531 aaKnown RBP16.53■□□□□ 0.24
VPS28-214ENST00000531032 BTG4Q9NY30 223 aa16.52■□□□□ 0.24
VPS28-214ENST00000531032 ZRANB1Q9UGI0 708 aa16.52■□□□□ 0.24
VPS28-214ENST00000531032 POLR3AO14802 1390 aaPredicted RBP16.51■□□□□ 0.23
VPS28-214ENST00000531032 PHRF1Q9P1Y6 1649 aaKnown RBP16.5■□□□□ 0.23
VPS28-214ENST00000531032 PAK3O75914 559 aaPredicted RBP16.5■□□□□ 0.23
VPS28-214ENST00000531032 KRT27Q7Z3Y8 459 aa16.5■□□□□ 0.23
VPS28-214ENST00000531032 CDK19Q9BWU1 502 aa16.5■□□□□ 0.23
VPS28-214ENST00000531032 FAM98CQ17RN3 349 aaKnown RBP16.48■□□□□ 0.23
VPS28-214ENST00000531032 NBPF1Q3BBV0 1214 aa16.48■□□□□ 0.23
VPS28-214ENST00000531032 CCDC61Q9Y6R9 512 aa16.48■□□□□ 0.23
VPS28-214ENST00000531032 SPATA31A5Q5VU36 1347 aa16.47■□□□□ 0.23
VPS28-214ENST00000531032 SPATA31A7Q8IWB4 1347 aa16.47■□□□□ 0.23
VPS28-214ENST00000531032 THSD7AQ9UPZ6 1657 aa16.47■□□□□ 0.23
VPS28-214ENST00000531032 PRDM11Q9NQV5 511 aa16.47■□□□□ 0.23
VPS28-214ENST00000531032 ACEP12821 1306 aa16.46■□□□□ 0.23
VPS28-214ENST00000531032 PLEKHG3A1L390 1219 aa16.46■□□□□ 0.23
VPS28-214ENST00000531032 SF3B2Q13435 895 aaKnown RBP16.46■□□□□ 0.23
VPS28-214ENST00000531032 DEFB132Q7Z7B7 95 aa16.46■□□□□ 0.23
VPS28-214ENST00000531032 KIAA0232Q92628 1395 aa16.46■□□□□ 0.23
VPS28-214ENST00000531032 A0A0G2JS52 829 aa16.45■□□□□ 0.22
VPS28-214ENST00000531032 MYT1Q01538 1121 aa16.45■□□□□ 0.22
VPS28-214ENST00000531032 NBPF8Q3BBV2 869 aa16.45■□□□□ 0.22
VPS28-214ENST00000531032 NRKQ7Z2Y5 1582 aa16.44■□□□□ 0.22
VPS28-214ENST00000531032 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
VPS28-214ENST00000531032 QRICH2Q9H0J4 1663 aa16.43■□□□□ 0.22
VPS28-214ENST00000531032 PPIP5K1Q6PFW1 1433 aa16.42■□□□□ 0.22
VPS28-214ENST00000531032 SPATA31A1Q5TZJ5 1347 aa16.42■□□□□ 0.22
VPS28-214ENST00000531032 RGPD1P0DJD0 1748 aa16.42■□□□□ 0.22
VPS28-214ENST00000531032 CHRNA2Q15822 529 aa16.41■□□□□ 0.22
VPS28-214ENST00000531032 NUTM2GQ5VZR2 741 aa16.41■□□□□ 0.22
VPS28-214ENST00000531032 USP19O94966 1318 aa16.41■□□□□ 0.22
VPS28-214ENST00000531032 LMO7Q8WWI1 1683 aa16.4■□□□□ 0.22
VPS28-214ENST00000531032 ZC3H6P61129 1189 aaKnown RBP16.4■□□□□ 0.22
VPS28-214ENST00000531032 SRPK2P78362 688 aaKnown RBP16.4■□□□□ 0.22
VPS28-214ENST00000531032 CPDO75976 1380 aa16.39■□□□□ 0.21
VPS28-214ENST00000531032 TRPM1Q7Z4N2 1603 aa16.39■□□□□ 0.21
VPS28-214ENST00000531032 BAG6P46379 1132 aa16.39■□□□□ 0.21
VPS28-214ENST00000531032 ABTB2Q8N961 1025 aa16.39■□□□□ 0.21
VPS28-214ENST00000531032 L3MBTL2Q969R5 705 aa16.39■□□□□ 0.21
VPS28-214ENST00000531032 BRD4O60885 1362 aaPredicted RBP16.38■□□□□ 0.21
VPS28-214ENST00000531032 SSH2Q76I76 1423 aa16.38■□□□□ 0.21
VPS28-214ENST00000531032 CAMTA1Q9Y6Y1 1673 aa16.38■□□□□ 0.21
VPS28-214ENST00000531032 CABP2Q9NPB3 220 aa16.38■□□□□ 0.21
VPS28-214ENST00000531032 TNS1Q9HBL0 1735 aaKnown RBP16.38■□□□□ 0.21
VPS28-214ENST00000531032 DISP2A7MBM2 1401 aa16.37■□□□□ 0.21
VPS28-214ENST00000531032 STRN4Q9NRL3 753 aa16.37■□□□□ 0.21
VPS28-214ENST00000531032 FAM182BQ5T319 152 aa16.36■□□□□ 0.21
VPS28-214ENST00000531032 USP6P35125 1406 aa16.36■□□□□ 0.21
VPS28-214ENST00000531032 LRP5O75197 1615 aa16.35■□□□□ 0.21
VPS28-214ENST00000531032 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
VPS28-214ENST00000531032 NLRP13Q86W25 1043 aa16.35■□□□□ 0.21
VPS28-214ENST00000531032 GCP02774 474 aa16.34■□□□□ 0.21
VPS28-214ENST00000531032 EVA1CP58658 441 aa16.33■□□□□ 0.2
VPS28-214ENST00000531032 SIN3AQ96ST3 1273 aa16.33■□□□□ 0.2
VPS28-214ENST00000531032 CABP1Q9NZU7 370 aa16.33■□□□□ 0.2
VPS28-214ENST00000531032 COL5A2P05997 1499 aaPredicted RBP16.33■□□□□ 0.2
VPS28-214ENST00000531032 SLIT3O75094 1523 aa16.33■□□□□ 0.2
VPS28-214ENST00000531032 PIK3C2AO00443 1686 aa16.32■□□□□ 0.2
VPS28-214ENST00000531032 EN1Q05925 392 aaPredicted RBP16.32■□□□□ 0.2
VPS28-214ENST00000531032 LARP1Q6PKG0 1096 aaKnown RBP16.32■□□□□ 0.2
VPS28-214ENST00000531032 FAM196AQ6ZSG2 479 aa16.32■□□□□ 0.2
VPS28-214ENST00000531032 EVC2Q86UK5 1308 aa16.32■□□□□ 0.2
VPS28-214ENST00000531032 USP35Q9P2H5 1018 aa16.32■□□□□ 0.2
VPS28-214ENST00000531032 ROCK2O75116 1388 aaKnown RBP16.31■□□□□ 0.2
VPS28-214ENST00000531032 TCP11L2Q8N4U5 519 aa16.31■□□□□ 0.2
VPS28-214ENST00000531032 THRAP3Q9Y2W1 955 aaKnown RBP16.3■□□□□ 0.2
VPS28-214ENST00000531032 PARP4Q9UKK3 1724 aaKnown RBP16.3■□□□□ 0.2
VPS28-214ENST00000531032 AKAP12Q02952 1782 aa16.29■□□□□ 0.2
VPS28-214ENST00000531032 AATKQ6ZMQ8 1374 aa16.28■□□□□ 0.2
VPS28-214ENST00000531032 PSDA5PKW4 1024 aaPredicted RBP16.28■□□□□ 0.2
VPS28-214ENST00000531032 TRIM37O94972 964 aa16.28■□□□□ 0.2
VPS28-214ENST00000531032 NLRP6P59044 892 aa16.28■□□□□ 0.2
VPS28-214ENST00000531032 NEUROD1Q13562 356 aa16.28■□□□□ 0.2
VPS28-214ENST00000531032 CRB1P82279 1406 aa16.28■□□□□ 0.2
VPS28-214ENST00000531032 PDE3BQ13370 1112 aa16.27■□□□□ 0.2
VPS28-214ENST00000531032 CAMKK2Q96RR4 588 aa16.27■□□□□ 0.2
VPS28-214ENST00000531032 COL18A1P39060 1754 aa16.27■□□□□ 0.2
VPS28-214ENST00000531032 PARD3Q8TEW0 1356 aa16.26■□□□□ 0.19
VPS28-214ENST00000531032 EZH2Q15910 746 aaKnown RBP16.26■□□□□ 0.19
VPS28-214ENST00000531032 RREB1Q92766 1687 aa16.25■□□□□ 0.19
VPS28-214ENST00000531032 ZNF692Q9BU19 519 aaPredicted RBP16.25■□□□□ 0.19
VPS28-214ENST00000531032 CPSF1Q10570 1443 aaKnown RBP16.25■□□□□ 0.19
VPS28-214ENST00000531032 SBNO2Q9Y2G9 1366 aa16.25■□□□□ 0.19
VPS28-214ENST00000531032 TTC21BQ7Z4L5 1316 aa16.24■□□□□ 0.19
VPS28-214ENST00000531032 LRRC37A3O60309 1634 aa16.24■□□□□ 0.19
VPS28-214ENST00000531032 PEAK1Q9H792 1746 aa16.24■□□□□ 0.19
VPS28-214ENST00000531032 MON2Q7Z3U7 1717 aa16.23■□□□□ 0.19
VPS28-214ENST00000531032 APBA3O96018 575 aa16.23■□□□□ 0.19
VPS28-214ENST00000531032 R3HDM1Q15032 1099 aaKnown RBP16.23■□□□□ 0.19
VPS28-214ENST00000531032 WNK3Q9BYP7 1800 aa16.23■□□□□ 0.19
VPS28-214ENST00000531032 NUP188Q5SRE5 1749 aa16.22■□□□□ 0.19
VPS28-214ENST00000531032 TTC21AQ8NDW8 1320 aa16.22■□□□□ 0.19
VPS28-214ENST00000531032 ZBTB7CA1YPR0 619 aa16.22■□□□□ 0.19
VPS28-214ENST00000531032 NFAT5O94916 1531 aa16.21■□□□□ 0.19
VPS28-214ENST00000531032 C11orf95C9JLR9 678 aaPredicted RBP16.21■□□□□ 0.19
VPS28-214ENST00000531032 ARHGEF25Q86VW2 580 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms