RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 MYO5BQ9ULV0 1848 aa24.82■■□□□ 1.56
PCF11-203ENST00000530304 PTPRMP28827 1452 aa24.82■■□□□ 1.56
PCF11-203ENST00000530304 ATAD2Q6PL18 1390 aa24.82■■□□□ 1.56
PCF11-203ENST00000530304 PRAM1Q96QH2 718 aa24.82■■□□□ 1.56
PCF11-203ENST00000530304 UPF2Q9HAU5 1272 aaKnown RBP24.81■■□□□ 1.56
PCF11-203ENST00000530304 CD163L1Q9NR16 1453 aa24.79■■□□□ 1.56
PCF11-203ENST00000530304 POGKQ9P215 609 aa24.79■■□□□ 1.56
PCF11-203ENST00000530304 TRIM27P14373 513 aa24.79■■□□□ 1.56
PCF11-203ENST00000530304 SSH1Q8WYL5 1049 aa24.79■■□□□ 1.56
PCF11-203ENST00000530304 TMEM131LA2VDJ0 1609 aa24.78■■□□□ 1.56
PCF11-203ENST00000530304 TBC1D32Q96NH3 1257 aa24.78■■□□□ 1.56
PCF11-203ENST00000530304 RICTORQ6R327 1708 aa24.78■■□□□ 1.56
PCF11-203ENST00000530304 MED14O60244 1454 aa24.77■■□□□ 1.56
PCF11-203ENST00000530304 YEATS2Q9ULM3 1422 aa24.77■■□□□ 1.56
PCF11-203ENST00000530304 YTHDC2Q9H6S0 1430 aaKnown RBP24.77■■□□□ 1.56
PCF11-203ENST00000530304 ANKRD26Q9UPS8 1709 aa24.76■■□□□ 1.55
PCF11-203ENST00000530304 IL16Q14005 1332 aa24.76■■□□□ 1.55
PCF11-203ENST00000530304 RIPK4P57078 832 aa24.76■■□□□ 1.55
PCF11-203ENST00000530304 PREX1Q8TCU6 1659 aa24.75■■□□□ 1.55
PCF11-203ENST00000530304 ATF7IPQ6VMQ6 1270 aa24.75■■□□□ 1.55
PCF11-203ENST00000530304 DIAPH1O60610 1272 aaKnown RBP24.74■■□□□ 1.55
PCF11-203ENST00000530304 DDX19BQ9UMR2 479 aa24.74■■□□□ 1.55
PCF11-203ENST00000530304 CLTCQ00610 1675 aaKnown RBP24.74■■□□□ 1.55
PCF11-203ENST00000530304 NOB1Q9ULX3 412 aaKnown RBP24.74■■□□□ 1.55
PCF11-203ENST00000530304 ITPRIPQ8IWB1 547 aa24.73■■□□□ 1.55
PCF11-203ENST00000530304 HDAC1Q13547 482 aaPredicted RBP24.73■■□□□ 1.55
PCF11-203ENST00000530304 HDGFL2Q7Z4V5 671 aaPredicted RBP24.73■■□□□ 1.55
PCF11-203ENST00000530304 SLKQ9H2G2 1235 aaPredicted RBP24.73■■□□□ 1.55
PCF11-203ENST00000530304 CDK19Q9BWU1 502 aa24.72■■□□□ 1.55
PCF11-203ENST00000530304 RTN4Q9NQC3 1192 aaKnown RBP24.72■■□□□ 1.55
PCF11-203ENST00000530304 BRPF3Q9ULD4 1205 aa24.72■■□□□ 1.55
PCF11-203ENST00000530304 PNPLA6Q8IY17 1366 aa24.72■■□□□ 1.55
PCF11-203ENST00000530304 PNNQ9H307 717 aaKnown RBP24.71■■□□□ 1.55
PCF11-203ENST00000530304 CABP1Q9NZU7 370 aa24.71■■□□□ 1.55
PCF11-203ENST00000530304 FBXO31Q5XUX0 539 aaPredicted RBP24.7■■□□□ 1.55
PCF11-203ENST00000530304 TBC1D2Q9BYX2 928 aa24.69■■□□□ 1.54
PCF11-203ENST00000530304 ANTXR1Q9H6X2 564 aa24.69■■□□□ 1.54
PCF11-203ENST00000530304 TMEM57Q8N5G2 664 aa24.68■■□□□ 1.54
PCF11-203ENST00000530304 ALKQ9UM73 1620 aa24.68■■□□□ 1.54
PCF11-203ENST00000530304 ARHGEF40Q8TER5 1519 aa24.67■■□□□ 1.54
PCF11-203ENST00000530304 FCHSD2O94868 740 aa24.66■■□□□ 1.54
PCF11-203ENST00000530304 ZBTB40Q9NUA8 1239 aa24.65■■□□□ 1.54
PCF11-203ENST00000530304 KIF16BQ96L93 1317 aa24.65■■□□□ 1.54
PCF11-203ENST00000530304 IPO8O15397 1037 aaKnown RBP24.65■■□□□ 1.54
PCF11-203ENST00000530304 SMC5Q8IY18 1101 aa24.65■■□□□ 1.54
PCF11-203ENST00000530304 KIF20BQ96Q89 1820 aa24.64■■□□□ 1.54
PCF11-203ENST00000530304 STAG3Q9UJ98 1225 aa24.64■■□□□ 1.53
PCF11-203ENST00000530304 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.63■■□□□ 1.53
PCF11-203ENST00000530304 FBLN1P23142 703 aa24.63■■□□□ 1.53
PCF11-203ENST00000530304 ALDH1L2Q3SY69 923 aa24.63■■□□□ 1.53
PCF11-203ENST00000530304 C22orf23Q9BZE7 217 aa24.62■■□□□ 1.53
PCF11-203ENST00000530304 RSPH6AQ9H0K4 717 aa24.62■■□□□ 1.53
PCF11-203ENST00000530304 PRKAR2BP31323 418 aa24.61■■□□□ 1.53
PCF11-203ENST00000530304 POLKQ9UBT6 870 aa24.61■■□□□ 1.53
PCF11-203ENST00000530304 LRRC7Q96NW7 1537 aa24.61■■□□□ 1.53
PCF11-203ENST00000530304 MFAP1P55081 439 aaKnown RBP24.61■■□□□ 1.53
PCF11-203ENST00000530304 CDC42BPGQ6DT37 1551 aa24.6■■□□□ 1.53
PCF11-203ENST00000530304 FAM135BQ49AJ0 1406 aa24.59■■□□□ 1.53
PCF11-203ENST00000530304 WAPLQ7Z5K2 1190 aa24.59■■□□□ 1.53
PCF11-203ENST00000530304 PHACTR3Q96KR7 559 aa24.56■■□□□ 1.52
PCF11-203ENST00000530304 NUCB1Q02818 461 aa24.55■■□□□ 1.52
PCF11-203ENST00000530304 SPRYD3Q8NCJ5 442 aa24.55■■□□□ 1.52
PCF11-203ENST00000530304 HMOX1P09601 288 aa24.55■■□□□ 1.52
PCF11-203ENST00000530304 BRPF1P55201 1214 aaPredicted RBP24.55■■□□□ 1.52
PCF11-203ENST00000530304 ZNF428Q96B54 188 aa24.55■■□□□ 1.52
PCF11-203ENST00000530304 ATP7BP35670 1465 aa24.54■■□□□ 1.52
PCF11-203ENST00000530304 NFE2L2Q16236 605 aa24.53■■□□□ 1.52
PCF11-203ENST00000530304 PPIP5K1Q6PFW1 1433 aa24.53■■□□□ 1.52
PCF11-203ENST00000530304 MAP2P11137 1827 aaKnown RBP24.53■■□□□ 1.52
PCF11-203ENST00000530304 DLC1Q96QB1 1528 aa24.52■■□□□ 1.52
PCF11-203ENST00000530304 THUMPD2Q9BTF0 503 aaKnown RBP24.52■■□□□ 1.52
PCF11-203ENST00000530304 VAMP4O75379 141 aa24.51■■□□□ 1.51
PCF11-203ENST00000530304 LNPKQ9C0E8 428 aa24.51■■□□□ 1.51
PCF11-203ENST00000530304 CHD1LQ86WJ1 897 aa24.5■■□□□ 1.51
PCF11-203ENST00000530304 EMILIN1Q9Y6C2 1016 aa24.5■■□□□ 1.51
PCF11-203ENST00000530304 ZBTB7BO15156 539 aaPredicted RBP24.49■■□□□ 1.51
PCF11-203ENST00000530304 A2ML1A8K2U0 1454 aa24.49■■□□□ 1.51
PCF11-203ENST00000530304 CALD1Q05682 793 aaKnown RBP24.49■■□□□ 1.51
PCF11-203ENST00000530304 MRPL50Q8N5N7 158 aaKnown RBP24.49■■□□□ 1.51
PCF11-203ENST00000530304 IL13P35225 146 aa24.48■■□□□ 1.51
PCF11-203ENST00000530304 TSPYL6Q8N831 410 aa24.48■■□□□ 1.51
PCF11-203ENST00000530304 RIMS2Q9UQ26 1411 aa24.47■■□□□ 1.51
PCF11-203ENST00000530304 ARHGAP45Q92619 1136 aa24.47■■□□□ 1.51
PCF11-203ENST00000530304 IFT57Q9NWB7 429 aa24.47■■□□□ 1.51
PCF11-203ENST00000530304 GNAI1P63096 354 aa24.46■■□□□ 1.51
PCF11-203ENST00000530304 NME9Q86XW9 330 aa24.46■■□□□ 1.51
PCF11-203ENST00000530304 CPSF1Q10570 1443 aaKnown RBP24.46■■□□□ 1.51
PCF11-203ENST00000530304 SETD1AO15047 1707 aaKnown RBP24.46■■□□□ 1.51
PCF11-203ENST00000530304 CHMP5Q9NZZ3 219 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 EDC4Q6P2E9 1401 aaKnown RBP24.45■■□□□ 1.5
PCF11-203ENST00000530304 RIMBP3CA6NJZ7 1639 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 RIMBP3BA6NNM3 1639 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 RIMBP3Q9UFD9 1639 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 WASLO00401 505 aaPredicted RBP24.45■■□□□ 1.5
PCF11-203ENST00000530304 ELL2O00472 640 aaPredicted RBP24.45■■□□□ 1.5
PCF11-203ENST00000530304 ZNF853P0CG23 659 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 CHMP4BQ9H444 224 aaKnown RBP24.45■■□□□ 1.5
PCF11-203ENST00000530304 MBIPQ9NS73 344 aa24.45■■□□□ 1.5
PCF11-203ENST00000530304 RBM25P49756 843 aaKnown RBP24.44■■□□□ 1.5
PCF11-203ENST00000530304 ZRANB1Q9UGI0 708 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms