RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MON2Q7Z3U7 1717 aa27.37■■□□□ 1.97
VPS28-209ENST00000528142 PNPLA6Q8IY17 1366 aa27.36■■□□□ 1.97
VPS28-209ENST00000528142 NME9Q86XW9 330 aa27.35■■□□□ 1.97
VPS28-209ENST00000528142 RUNDC1Q96C34 613 aa27.35■■□□□ 1.97
VPS28-209ENST00000528142 RCAN3Q9UKA8 241 aa27.35■■□□□ 1.97
VPS28-209ENST00000528142 AKAP12Q02952 1782 aa27.35■■□□□ 1.97
VPS28-209ENST00000528142 GOLGA2Q08379 1002 aa27.34■■□□□ 1.97
VPS28-209ENST00000528142 NWD1Q149M9 1564 aa27.32■■□□□ 1.96
VPS28-209ENST00000528142 ACEP12821 1306 aa27.32■■□□□ 1.96
VPS28-209ENST00000528142 RBM33Q96EV2 1170 aaKnown RBP27.32■■□□□ 1.96
VPS28-209ENST00000528142 NKTRP30414 1462 aaKnown RBP27.31■■□□□ 1.96
VPS28-209ENST00000528142 NUTM2FA1L443 756 aa27.31■■□□□ 1.96
VPS28-209ENST00000528142 DUSP27Q5VZP5 1158 aa27.31■■□□□ 1.96
VPS28-209ENST00000528142 ITSN1Q15811 1721 aa27.31■■□□□ 1.96
VPS28-209ENST00000528142 POLKQ9UBT6 870 aa27.3■■□□□ 1.96
VPS28-209ENST00000528142 IQSEC2Q5JU85 1478 aa27.3■■□□□ 1.96
VPS28-209ENST00000528142 STRCP1A6NGW2 1772 aa27.3■■□□□ 1.96
VPS28-209ENST00000528142 SLFN5Q08AF3 891 aa27.3■■□□□ 1.96
VPS28-209ENST00000528142 TRMT2AQ8IZ69 625 aaKnown RBP27.3■■□□□ 1.96
VPS28-209ENST00000528142 ZRANB1Q9UGI0 708 aa27.3■■□□□ 1.96
VPS28-209ENST00000528142 U2AF1L5P0DN76 240 aaPredicted RBP27.29■■□□□ 1.96
VPS28-209ENST00000528142 U2AF1Q01081 240 aaKnown RBP eCLIP27.29■■□□□ 1.96
VPS28-209ENST00000528142 PPP4R2Q9NY27 417 aa27.29■■□□□ 1.96
VPS28-209ENST00000528142 AATKQ6ZMQ8 1374 aa27.28■■□□□ 1.96
VPS28-209ENST00000528142 FBLN1P23142 703 aa27.27■■□□□ 1.96
VPS28-209ENST00000528142 TCP11L2Q8N4U5 519 aa27.27■■□□□ 1.96
VPS28-209ENST00000528142 TTC21BQ7Z4L5 1316 aa27.27■■□□□ 1.96
VPS28-209ENST00000528142 USP6P35125 1406 aa27.27■■□□□ 1.96
VPS28-209ENST00000528142 NALCNQ8IZF0 1738 aa27.26■■□□□ 1.96
VPS28-209ENST00000528142 RRP1P56182 461 aaKnown RBP27.26■■□□□ 1.95
VPS28-209ENST00000528142 COG3Q96JB2 828 aa27.26■■□□□ 1.95
VPS28-209ENST00000528142 NRKQ7Z2Y5 1582 aa27.26■■□□□ 1.95
VPS28-209ENST00000528142 NCBP3Q53F19 620 aaKnown RBP27.25■■□□□ 1.95
VPS28-209ENST00000528142 PHF23Q9BUL5 403 aaPredicted RBP27.25■■□□□ 1.95
VPS28-209ENST00000528142 SSH2Q76I76 1423 aa27.25■■□□□ 1.95
VPS28-209ENST00000528142 DIAPH1O60610 1272 aaKnown RBP27.25■■□□□ 1.95
VPS28-209ENST00000528142 WWC1Q8IX03 1113 aa27.25■■□□□ 1.95
VPS28-209ENST00000528142 ANKARQ7Z5J8 1434 aa27.24■■□□□ 1.95
VPS28-209ENST00000528142 PELP1Q8IZL8 1130 aaKnown RBP27.24■■□□□ 1.95
VPS28-209ENST00000528142 SPINK5Q9NQ38 1064 aaPredicted RBP27.24■■□□□ 1.95
VPS28-209ENST00000528142 PLEKHF1Q96S99 279 aa27.22■■□□□ 1.95
VPS28-209ENST00000528142 DMRT2Q9Y5R5 561 aa27.22■■□□□ 1.95
VPS28-209ENST00000528142 E9PSI1 815 aa27.21■■□□□ 1.95
VPS28-209ENST00000528142 U2SURPO15042 1029 aaKnown RBP27.21■■□□□ 1.95
VPS28-209ENST00000528142 CCDC27Q2M243 656 aa27.2■■□□□ 1.95
VPS28-209ENST00000528142 EMILIN1Q9Y6C2 1016 aa27.2■■□□□ 1.94
VPS28-209ENST00000528142 PMFBP1Q8TBY8 1022 aa27.19■■□□□ 1.94
VPS28-209ENST00000528142 RRP7AQ9Y3A4 280 aaKnown RBP27.19■■□□□ 1.94
VPS28-209ENST00000528142 RGPD8O14715 1765 aaPredicted RBP27.18■■□□□ 1.94
VPS28-209ENST00000528142 OVOS2A0A0J9YW53 1432 aa27.18■■□□□ 1.94
VPS28-209ENST00000528142 OVOS2Q6IE36 1432 aa27.18■■□□□ 1.94
VPS28-209ENST00000528142 CDK12Q9NYV4 1490 aaPredicted RBP27.18■■□□□ 1.94
VPS28-209ENST00000528142 PPM1GO15355 546 aaPredicted RBP27.17■■□□□ 1.94
VPS28-209ENST00000528142 FMN2Q9NZ56 1722 aa27.17■■□□□ 1.94
VPS28-209ENST00000528142 ADGRL3Q9HAR2 1447 aa27.16■■□□□ 1.94
VPS28-209ENST00000528142 TTC21AQ8NDW8 1320 aa27.16■■□□□ 1.94
VPS28-209ENST00000528142 NEUROD2Q15784 382 aa27.16■■□□□ 1.94
VPS28-209ENST00000528142 MAP2P11137 1827 aaKnown RBP27.15■■□□□ 1.94
VPS28-209ENST00000528142 WDR63Q8IWG1 891 aa27.15■■□□□ 1.94
VPS28-209ENST00000528142 PROSER2Q86WR7 435 aaPredicted RBP27.14■■□□□ 1.94
VPS28-209ENST00000528142 NGDNQ8NEJ9 315 aaKnown RBP27.14■■□□□ 1.94
VPS28-209ENST00000528142 USP31Q70CQ4 1352 aa27.13■■□□□ 1.93
VPS28-209ENST00000528142 IL13P35225 146 aa27.13■■□□□ 1.93
VPS28-209ENST00000528142 FCHSD2O94868 740 aa27.12■■□□□ 1.93
VPS28-209ENST00000528142 RRS1Q15050 365 aaKnown RBP27.12■■□□□ 1.93
VPS28-209ENST00000528142 PNNQ9H307 717 aaKnown RBP27.11■■□□□ 1.93
VPS28-209ENST00000528142 TMPOP42166 694 aaKnown RBP27.09■■□□□ 1.93
VPS28-209ENST00000528142 B4GALNT3Q6L9W6 998 aa27.09■■□□□ 1.93
VPS28-209ENST00000528142 ZNF335Q9H4Z2 1342 aaPredicted RBP27.09■■□□□ 1.93
VPS28-209ENST00000528142 RSPH6AQ9H0K4 717 aa27.09■■□□□ 1.93
VPS28-209ENST00000528142 TMEM94Q12767 1356 aa27.08■■□□□ 1.93
VPS28-209ENST00000528142 MAPK8IP3Q9UPT6 1336 aa27.08■■□□□ 1.93
VPS28-209ENST00000528142 XIRP1Q702N8 1843 aaKnown RBP27.07■■□□□ 1.92
VPS28-209ENST00000528142 PLIN1O60240 522 aa27.06■■□□□ 1.92
VPS28-209ENST00000528142 TRIM35Q9UPQ4 493 aa27.04■■□□□ 1.92
VPS28-209ENST00000528142 LRRC7Q96NW7 1537 aa27.04■■□□□ 1.92
VPS28-209ENST00000528142 PRKAR2BP31323 418 aa27.03■■□□□ 1.92
VPS28-209ENST00000528142 C14orf37Q86TY3 774 aa27.03■■□□□ 1.92
VPS28-209ENST00000528142 EXOC6Q8TAG9 804 aa27.03■■□□□ 1.92
VPS28-209ENST00000528142 PHF8Q9UPP1 1060 aa27.03■■□□□ 1.92
VPS28-209ENST00000528142 PIK3C2AO00443 1686 aa27■■□□□ 1.91
VPS28-209ENST00000528142 HMOX1P09601 288 aa27■■□□□ 1.91
VPS28-209ENST00000528142 RIPK4P57078 832 aa26.99■■□□□ 1.91
VPS28-209ENST00000528142 C19orf44Q9H6X5 657 aa26.99■■□□□ 1.91
VPS28-209ENST00000528142 EIF4A2Q14240 407 aaKnown RBP26.97■■□□□ 1.91
VPS28-209ENST00000528142 MYH16Q9H6N6 1097 aa26.97■■□□□ 1.91
VPS28-209ENST00000528142 NCOA3Q9Y6Q9 1424 aa26.97■■□□□ 1.91
VPS28-209ENST00000528142 CCDC136Q96JN2 1154 aa26.97■■□□□ 1.91
VPS28-209ENST00000528142 PHACTR3Q96KR7 559 aa26.97■■□□□ 1.91
VPS28-209ENST00000528142 PEAK1Q9H792 1746 aa26.97■■□□□ 1.91
VPS28-209ENST00000528142 IL16Q14005 1332 aa26.96■■□□□ 1.91
VPS28-209ENST00000528142 MAP3K19Q56UN5 1328 aa26.96■■□□□ 1.91
VPS28-209ENST00000528142 NLRP6P59044 892 aa26.95■■□□□ 1.91
VPS28-209ENST00000528142 C20orf194Q5TEA3 1177 aa26.95■■□□□ 1.91
VPS28-209ENST00000528142 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.95■■□□□ 1.91
VPS28-209ENST00000528142 NEFMP07197 916 aa26.95■■□□□ 1.9
VPS28-209ENST00000528142 HSP90AB2PQ58FF8 381 aa26.94■■□□□ 1.9
VPS28-209ENST00000528142 BCAR3O75815 825 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 NFE2L2Q16236 605 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 ESCO1Q5FWF5 840 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms