RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PRSS12P56730 875 aa6.19□□□□□ -1.42
CD44-226ENST00000527889 BEGAINQ9BUH8 593 aa6.19□□□□□ -1.42
CD44-226ENST00000527889 CCDC9Q9Y3X0 531 aaKnown RBP6.19□□□□□ -1.42
CD44-226ENST00000527889 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.19□□□□□ -1.42
CD44-226ENST00000527889 KDM5BQ9UGL1 1544 aa6.19□□□□□ -1.42
CD44-226ENST00000527889 TCOF1Q13428 1488 aaKnown RBP6.18□□□□□ -1.42
CD44-226ENST00000527889 TRIM6-TRIM34B2RNG4 842 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 BHMG1C9JSJ3 638 aaPredicted RBP6.18□□□□□ -1.42
CD44-226ENST00000527889 HSPA2P54652 639 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 CDCA7LQ96GN5 454 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-226ENST00000527889 TRAIPQ9BWF2 469 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 PLSCR2Q9NRY7 297 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 FAM217BQ9NTX9 383 aaPredicted RBP6.18□□□□□ -1.42
CD44-226ENST00000527889 SERPINA10Q9UK55 444 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 SAMD9LQ8IVG5 1584 aa6.18□□□□□ -1.42
CD44-226ENST00000527889 CFAP65Q6ZU64 1925 aaKnown RBP6.17□□□□□ -1.42
CD44-226ENST00000527889 CAMSAP2Q08AD1 1489 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 RAD21O60216 631 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 MMRN1Q13201 1228 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 PADI6Q6TGC4 694 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 TTC13Q8NBP0 860 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 POLR3EQ9NVU0 708 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 KIAA1468Q9P260 1216 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 CDK11AQ9UQ88 783 aaPredicted RBP6.17□□□□□ -1.42
CD44-226ENST00000527889 ABCA9Q8IUA7 1624 aa6.17□□□□□ -1.42
CD44-226ENST00000527889 GPATCH8Q9UKJ3 1502 aaKnown RBP6.16□□□□□ -1.42
CD44-226ENST00000527889 PLEKHD1A6NEE1 506 aa6.16□□□□□ -1.42
CD44-226ENST00000527889 SPDYE5A6NIY4 337 aa6.16□□□□□ -1.42
CD44-226ENST00000527889 CCDC97Q96F63 343 aaPredicted RBP6.16□□□□□ -1.42
CD44-226ENST00000527889 RABGEF1Q9UJ41 708 aa6.16□□□□□ -1.42
CD44-226ENST00000527889 COG6Q9Y2V7 657 aa6.16□□□□□ -1.42
CD44-226ENST00000527889 PTPRKQ15262 1439 aa6.16□□□□□ -1.42
CD44-226ENST00000527889 DIP2BQ9P265 1576 aa6.15□□□□□ -1.42
CD44-226ENST00000527889 MYSM1Q5VVJ2 828 aa6.15□□□□□ -1.42
CD44-226ENST00000527889 RBM27Q9P2N5 1060 aaKnown RBP6.15□□□□□ -1.42
CD44-226ENST00000527889 SEPT9Q9UHD8 586 aaPredicted RBP6.15□□□□□ -1.42
CD44-226ENST00000527889 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.15□□□□□ -1.43
CD44-226ENST00000527889 MIA2Q96PC5 1412 aa6.15□□□□□ -1.43
CD44-226ENST00000527889 ARHGAP5Q13017 1502 aa6.15□□□□□ -1.43
CD44-226ENST00000527889 SMAPO00193 183 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 FAM161AQ3B820 660 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 METTL3Q86U44 580 aaKnown RBP6.14□□□□□ -1.43
CD44-226ENST00000527889 BANK1Q8NDB2 785 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 NLRP7Q8WX94 980 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 SNRKQ9NRH2 765 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 MYT1LQ9UL68 1186 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 WDR7Q9Y4E6 1490 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 ARHGEF5Q12774 1597 aa6.14□□□□□ -1.43
CD44-226ENST00000527889 CLK2P49760 499 aaKnown RBP6.13□□□□□ -1.43
CD44-226ENST00000527889 CCER1Q8TC90 406 aaPredicted RBP6.13□□□□□ -1.43
CD44-226ENST00000527889 ZNF644Q9H582 1327 aaPredicted RBP6.13□□□□□ -1.43
CD44-226ENST00000527889 DAPK1P53355 1430 aa6.13□□□□□ -1.43
CD44-226ENST00000527889 SYCP2Q9BX26 1530 aa6.13□□□□□ -1.43
CD44-226ENST00000527889 OATP04181 439 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 RFC5P40937 340 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 PPRC1Q5VV67 1664 aaKnown RBP6.12□□□□□ -1.43
CD44-226ENST00000527889 FBXO31Q5XUX0 539 aaPredicted RBP6.12□□□□□ -1.43
CD44-226ENST00000527889 ASXL2Q76L83 1435 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 KCTD17Q8N5Z5 321 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 PXYLP1Q8TE99 480 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 SETD5Q9C0A6 1442 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 NBPF3Q9H094 633 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 RAB3GAP2Q9H2M9 1393 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 ADGRG1Q9Y653 693 aa6.12□□□□□ -1.43
CD44-226ENST00000527889 MAP3K4Q9Y6R4 1608 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 CFAP74Q9C0B2 1584 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 ABCC1P33527 1531 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 COL17A1Q9UMD9 1497 aaPredicted RBP6.11□□□□□ -1.43
CD44-226ENST00000527889 ABCC5O15440 1437 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 NUDT18Q6ZVK8 323 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 PACS2Q86VP3 889 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 MRPL50Q8N5N7 158 aaKnown RBP6.11□□□□□ -1.43
CD44-226ENST00000527889 TATDN2Q93075 761 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 RNF166Q96A37 237 aaPredicted RBP6.11□□□□□ -1.43
CD44-226ENST00000527889 TBC1D2Q9BYX2 928 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 CFDP1Q9UEE9 299 aaPredicted RBP6.11□□□□□ -1.43
CD44-226ENST00000527889 CHIC2Q9UKJ5 165 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 PNMA3Q9UL41 463 aa6.11□□□□□ -1.43
CD44-226ENST00000527889 ZNF330Q9Y3S2 320 aaPredicted RBP6.11□□□□□ -1.43
CD44-226ENST00000527889 PTPRMP28827 1452 aa6.1□□□□□ -1.43
CD44-226ENST00000527889 NBPF26B4DH59 902 aa6.1□□□□□ -1.43
CD44-226ENST00000527889 EIF5BO60841 1220 aaKnown RBP6.1□□□□□ -1.43
CD44-226ENST00000527889 PPP2R2DQ66LE6 453 aa6.1□□□□□ -1.43
CD44-226ENST00000527889 EYA1Q99502 592 aa6.1□□□□□ -1.43
CD44-226ENST00000527889 MAST1Q9Y2H9 1570 aa6.1□□□□□ -1.43
CD44-226ENST00000527889 MAPKBP1O60336 1514 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 ARAP3Q8WWN8 1544 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 HFM1A2PYH4 1435 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 NAIPQ13075 1403 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 DHX57Q6P158 1386 aaKnown RBP6.09□□□□□ -1.43
CD44-226ENST00000527889 RICTORQ6R327 1708 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 FAM98CQ17RN3 349 aaKnown RBP6.09□□□□□ -1.43
CD44-226ENST00000527889 TMEM259Q4ZIN3 620 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 LAPTM4BQ86VI4 370 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 RETREG2Q8NC44 543 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 KCTD12Q96CX2 325 aaKnown RBP6.09□□□□□ -1.43
CD44-226ENST00000527889 ZFRQ96KR1 1074 aaKnown RBP6.09□□□□□ -1.43
CD44-226ENST00000527889 RRP7BPQ9NSQ0 103 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 LIMD1Q9UGP4 676 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms