RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 WIPF1O43516 503 aa8.69□□□□□ -1.02
USP48-211ENST00000526044 MMP16P51512 607 aa8.69□□□□□ -1.02
USP48-211ENST00000526044 PRDM9Q9NQV7 894 aa8.69□□□□□ -1.02
USP48-211ENST00000526044 NFX1Q12986 1120 aaKnown RBP8.68□□□□□ -1.02
USP48-211ENST00000526044 RTL5Q5HYW3 569 aaPredicted RBP8.68□□□□□ -1.02
USP48-211ENST00000526044 DESI1Q6ICB0 168 aa8.68□□□□□ -1.02
USP48-211ENST00000526044 SNIP1Q8TAD8 396 aaKnown RBP8.68□□□□□ -1.02
USP48-211ENST00000526044 SENP2Q9HC62 589 aa8.68□□□□□ -1.02
USP48-211ENST00000526044 DXOO77932 396 aaKnown RBP8.67□□□□□ -1.02
USP48-211ENST00000526044 JUNDP17535 347 aa8.67□□□□□ -1.02
USP48-211ENST00000526044 PPP2R2DQ66LE6 453 aa8.67□□□□□ -1.02
USP48-211ENST00000526044 CFAP99D6REC4 459 aa8.66□□□□□ -1.02
USP48-211ENST00000526044 WNT7AO00755 349 aa8.66□□□□□ -1.02
USP48-211ENST00000526044 ATP13A2Q9NQ11 1180 aa8.66□□□□□ -1.02
USP48-211ENST00000526044 TMEM132AQ24JP5 1023 aa8.65□□□□□ -1.02
USP48-211ENST00000526044 TSC1Q92574 1164 aa8.64□□□□□ -1.03
USP48-211ENST00000526044 KIFC2Q96AC6 838 aa8.64□□□□□ -1.03
USP48-211ENST00000526044 FAM181BA6NEQ2 426 aa8.63□□□□□ -1.03
USP48-211ENST00000526044 TERTO14746 1132 aaKnown RBP8.63□□□□□ -1.03
USP48-211ENST00000526044 FBXO31Q5XUX0 539 aaPredicted RBP8.63□□□□□ -1.03
USP48-211ENST00000526044 LYPD8Q6UX82 237 aa8.63□□□□□ -1.03
USP48-211ENST00000526044 HELBQ8NG08 1087 aaPredicted RBP8.63□□□□□ -1.03
USP48-211ENST00000526044 SMPD1P17405 629 aa8.62□□□□□ -1.03
USP48-211ENST00000526044 RFC5P40937 340 aa8.62□□□□□ -1.03
USP48-211ENST00000526044 PTPRNQ16849 979 aa8.62□□□□□ -1.03
USP48-211ENST00000526044 TRIM47Q96LD4 638 aa8.62□□□□□ -1.03
USP48-211ENST00000526044 NUDT12Q9BQG2 462 aa8.62□□□□□ -1.03
USP48-211ENST00000526044 TRIM32Q13049 653 aa8.61□□□□□ -1.03
USP48-211ENST00000526044 CCDC24Q8N4L8 307 aa8.61□□□□□ -1.03
USP48-211ENST00000526044 SLC16A10Q8TF71 515 aa8.61□□□□□ -1.03
USP48-211ENST00000526044 CCNYL3P0C7X3 344 aa8.6□□□□□ -1.03
USP48-211ENST00000526044 SNRPBP14678 240 aaKnown RBP8.6□□□□□ -1.03
USP48-211ENST00000526044 TMEM259Q4ZIN3 620 aa8.6□□□□□ -1.03
USP48-211ENST00000526044 MRGPRX2Q96LB1 330 aa8.6□□□□□ -1.03
USP48-211ENST00000526044 EVA1BQ9NVM1 165 aa8.6□□□□□ -1.03
USP48-211ENST00000526044 AP1G2O75843 785 aa8.59□□□□□ -1.03
USP48-211ENST00000526044 CTDSPL2Q05D32 466 aa8.59□□□□□ -1.03
USP48-211ENST00000526044 PER1O15534 1290 aaPredicted RBP8.58□□□□□ -1.04
USP48-211ENST00000526044 ABCC9O60706 1549 aa8.58□□□□□ -1.04
USP48-211ENST00000526044 J3QL48 77 aa8.57□□□□□ -1.04
USP48-211ENST00000526044 KCNH2Q12809 1159 aa8.57□□□□□ -1.04
USP48-211ENST00000526044 CTHP32929 405 aa8.56□□□□□ -1.04
USP48-211ENST00000526044 PTCRAQ6ISU1 281 aaPredicted RBP8.55□□□□□ -1.04
USP48-211ENST00000526044 HPS1Q92902 700 aa8.55□□□□□ -1.04
USP48-211ENST00000526044 F12P00748 615 aaPredicted RBP8.54□□□□□ -1.04
USP48-211ENST00000526044 USP17L8P0C7I0 530 aa8.54□□□□□ -1.04
USP48-211ENST00000526044 BANK1Q8NDB2 785 aa8.54□□□□□ -1.04
USP48-211ENST00000526044 LRRN4Q8WUT4 740 aa8.54□□□□□ -1.04
USP48-211ENST00000526044 WNT7BP56706 349 aa8.53□□□□□ -1.04
USP48-211ENST00000526044 RC3H1Q5TC82 1133 aaKnown RBP8.53□□□□□ -1.04
USP48-211ENST00000526044 UNC93B1Q9H1C4 597 aa8.52□□□□□ -1.05
USP48-211ENST00000526044 MAP10Q9P2G4 905 aa8.52□□□□□ -1.05
USP48-211ENST00000526044 NXF1Q9UBU9 619 aaKnown RBP8.51□□□□□ -1.05
USP48-211ENST00000526044 ALDH1A1P00352 501 aa8.5□□□□□ -1.05
USP48-211ENST00000526044 ARMC2Q8NEN0 867 aa8.5□□□□□ -1.05
USP48-211ENST00000526044 IRF7Q92985 503 aa8.5□□□□□ -1.05
USP48-211ENST00000526044 NPAS3Q8IXF0 933 aa8.49□□□□□ -1.05
USP48-211ENST00000526044 NR6A1Q15406 480 aa8.48□□□□□ -1.05
USP48-211ENST00000526044 ZSCAN1Q8NBB4 408 aa8.48□□□□□ -1.05
USP48-211ENST00000526044 BAP1Q92560 729 aa8.48□□□□□ -1.05
USP48-211ENST00000526044 HMX1Q9NP08 348 aaPredicted RBP8.48□□□□□ -1.05
USP48-211ENST00000526044 WASF2Q9Y6W5 498 aa8.48□□□□□ -1.05
USP48-211ENST00000526044 LCE2CQ5TA81 110 aa8.47□□□□□ -1.05
USP48-211ENST00000526044 SNRKQ9NRH2 765 aa8.47□□□□□ -1.05
USP48-211ENST00000526044 APBB1O00213 710 aa8.46□□□□□ -1.06
USP48-211ENST00000526044 SOCS7O14512 581 aa8.46□□□□□ -1.06
USP48-211ENST00000526044 SKOR1P84550 965 aa8.46□□□□□ -1.06
USP48-211ENST00000526044 PNMA1Q8ND90 353 aa8.46□□□□□ -1.06
USP48-211ENST00000526044 EHBP1Q8NDI1 1231 aa8.46□□□□□ -1.06
USP48-211ENST00000526044 CAPN5O15484 640 aaPredicted RBP8.45□□□□□ -1.06
USP48-211ENST00000526044 SH3BP2P78314 561 aa8.45□□□□□ -1.06
USP48-211ENST00000526044 LINC01559Q495D7 138 aa8.45□□□□□ -1.06
USP48-211ENST00000526044 ZNF511Q8NB15 262 aa8.45□□□□□ -1.06
USP48-211ENST00000526044 EPS8L1Q8TE68 723 aa8.45□□□□□ -1.06
USP48-211ENST00000526044 GPKOWQ92917 476 aaPredicted RBP eCLIP8.45□□□□□ -1.06
USP48-211ENST00000526044 GMPRP36959 345 aa8.44□□□□□ -1.06
USP48-211ENST00000526044 NBPF14Q5TI25 921 aa8.44□□□□□ -1.06
USP48-211ENST00000526044 MTMR14Q8NCE2 650 aa8.44□□□□□ -1.06
USP48-211ENST00000526044 GJD4Q96KN9 370 aaPredicted RBP8.44□□□□□ -1.06
USP48-211ENST00000526044 TRIM34Q9BYJ4 488 aa8.44□□□□□ -1.06
USP48-211ENST00000526044 FKBPLQ9UIM3 349 aa8.44□□□□□ -1.06
USP48-211ENST00000526044 ZC3H4Q9UPT8 1303 aaKnown RBP8.43□□□□□ -1.06
USP48-211ENST00000526044 ZCCHC6Q5VYS8 1495 aaKnown RBP8.41□□□□□ -1.06
USP48-211ENST00000526044 FLIIQ13045 1269 aa8.41□□□□□ -1.06
USP48-211ENST00000526044 AGERQ15109 404 aa8.41□□□□□ -1.06
USP48-211ENST00000526044 PDXDC2PQ6P474 469 aa8.41□□□□□ -1.06
USP48-211ENST00000526044 BPHLQ86WA6 291 aaPredicted RBP8.41□□□□□ -1.06
USP48-211ENST00000526044 PRM3Q9NNZ6 103 aa8.41□□□□□ -1.06
USP48-211ENST00000526044 BMP1P13497 986 aa8.4□□□□□ -1.06
USP48-211ENST00000526044 VARSP26640 1264 aaKnown RBP8.4□□□□□ -1.06
USP48-211ENST00000526044 MCM6Q14566 821 aa8.4□□□□□ -1.06
USP48-211ENST00000526044 FOXJ1Q92949 421 aa8.4□□□□□ -1.06
USP48-211ENST00000526044 NDUFB9Q9Y6M9 179 aa8.4□□□□□ -1.06
USP48-211ENST00000526044 SIAH2O43255 324 aa8.39□□□□□ -1.07
USP48-211ENST00000526044 TRIM46Q7Z4K8 759 aa8.39□□□□□ -1.07
USP48-211ENST00000526044 H3BM21 787 aa8.38□□□□□ -1.07
USP48-211ENST00000526044 VEGFBP49765 207 aa8.38□□□□□ -1.07
USP48-211ENST00000526044 PTK2Q05397 1052 aa8.38□□□□□ -1.07
USP48-211ENST00000526044 SH3BP5LQ7L8J4 393 aa8.38□□□□□ -1.07
USP48-211ENST00000526044 GPSM3Q9Y4H4 160 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms