RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CLUAP1Q96AJ1 413 aa9.08□□□□□ -0.96
CD44-215ENST00000525241 SLC19A1P41440 591 aa9.07□□□□□ -0.96
CD44-215ENST00000525241 TRIM32Q13049 653 aa9.07□□□□□ -0.96
CD44-215ENST00000525241 BAP1Q92560 729 aa9.07□□□□□ -0.96
CD44-215ENST00000525241 PRM3Q9NNZ6 103 aa9.07□□□□□ -0.96
CD44-215ENST00000525241 C14orf37Q86TY3 774 aa9.06□□□□□ -0.96
CD44-215ENST00000525241 ZC3H4Q9UPT8 1303 aaKnown RBP9.05□□□□□ -0.96
CD44-215ENST00000525241 RAD21O60216 631 aa9.05□□□□□ -0.96
CD44-215ENST00000525241 IRF5Q13568 498 aa9.05□□□□□ -0.96
CD44-215ENST00000525241 PNMA1Q8ND90 353 aa9.05□□□□□ -0.96
CD44-215ENST00000525241 GPKOWQ92917 476 aaPredicted RBP eCLIP9.05□□□□□ -0.96
CD44-215ENST00000525241 TIMELESSQ9UNS1 1208 aa9.05□□□□□ -0.96
CD44-215ENST00000525241 A6NJR5 290 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 CD2BP2O95400 341 aaKnown RBP9.04□□□□□ -0.96
CD44-215ENST00000525241 ABL2P42684 1182 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 SH3BP2P78314 561 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 LINC01559Q495D7 138 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 NBPF14Q5TI25 921 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 PDXDC2PQ6P474 469 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 ZNF511Q8NB15 262 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 PRKD2Q9BZL6 878 aa9.04□□□□□ -0.96
CD44-215ENST00000525241 SKOR1P84550 965 aa9.03□□□□□ -0.96
CD44-215ENST00000525241 SPRYD7Q5W111 196 aa9.03□□□□□ -0.96
CD44-215ENST00000525241 ZMYND15Q9H091 742 aa9.03□□□□□ -0.96
CD44-215ENST00000525241 V9GY48 417 aaPredicted RBP9.03□□□□□ -0.96
CD44-215ENST00000525241 WNT7BP56706 349 aa9.02□□□□□ -0.97
CD44-215ENST00000525241 ERICH6Q7L0X2 663 aa9.02□□□□□ -0.97
CD44-215ENST00000525241 SH3BP5LQ7L8J4 393 aa9.02□□□□□ -0.97
CD44-215ENST00000525241 FNBP4Q8N3X1 1017 aaPredicted RBP9.02□□□□□ -0.97
CD44-215ENST00000525241 OCSTAMPQ9BR26 566 aa9.02□□□□□ -0.97
CD44-215ENST00000525241 FOXJ1Q92949 421 aa9.01□□□□□ -0.97
CD44-215ENST00000525241 GPSM3Q9Y4H4 160 aa9.01□□□□□ -0.97
CD44-215ENST00000525241 C4orf48Q5BLP8 95 aa9□□□□□ -0.97
CD44-215ENST00000525241 SH3RF1Q7Z6J0 888 aa9□□□□□ -0.97
CD44-215ENST00000525241 PROSER2Q86WR7 435 aaPredicted RBP9□□□□□ -0.97
CD44-215ENST00000525241 RGS20O76081 388 aa8.99□□□□□ -0.97
CD44-215ENST00000525241 FBXO45P0C2W1 286 aa8.99□□□□□ -0.97
CD44-215ENST00000525241 PTK2Q05397 1052 aa8.99□□□□□ -0.97
CD44-215ENST00000525241 ZNF598Q86UK7 904 aaKnown RBP8.99□□□□□ -0.97
CD44-215ENST00000525241 ZBBXA8MT70 800 aa8.98□□□□□ -0.97
CD44-215ENST00000525241 RC3H1Q5TC82 1133 aaKnown RBP8.98□□□□□ -0.97
CD44-215ENST00000525241 ZNF697Q5TEC3 545 aa8.98□□□□□ -0.97
CD44-215ENST00000525241 BPHLQ86WA6 291 aaPredicted RBP8.98□□□□□ -0.97
CD44-215ENST00000525241 NR1H3Q13133 447 aa8.97□□□□□ -0.97
CD44-215ENST00000525241 WASHC4Q2M389 1173 aa8.97□□□□□ -0.97
CD44-215ENST00000525241 ARHGAP9Q9BRR9 750 aa8.97□□□□□ -0.97
CD44-215ENST00000525241 TRAK2O60296 914 aa8.96□□□□□ -0.98
CD44-215ENST00000525241 AGERQ15109 404 aa8.96□□□□□ -0.98
CD44-215ENST00000525241 MAGEB6P1A0A0J9YX57 407 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 WNT7AO00755 349 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 VAC14Q08AM6 782 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 WWC1Q8IX03 1113 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 ADAM32Q8TC27 787 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 C1QTNF2Q9BXJ5 285 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 CARD14Q9BXL6 1004 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 PKD2L1Q9P0L9 805 aa8.95□□□□□ -0.98
CD44-215ENST00000525241 VARSP26640 1264 aaKnown RBP8.94□□□□□ -0.98
CD44-215ENST00000525241 ERFEQ4G0M1 354 aa8.94□□□□□ -0.98
CD44-215ENST00000525241 ZBTB33Q86T24 672 aa8.94□□□□□ -0.98
CD44-215ENST00000525241 ZNF330Q9Y3S2 320 aaPredicted RBP8.94□□□□□ -0.98
CD44-215ENST00000525241 POM121CA8CG34 1229 aa8.93□□□□□ -0.98
CD44-215ENST00000525241 SIAH2O43255 324 aa8.93□□□□□ -0.98
CD44-215ENST00000525241 EHBP1Q8NDI1 1231 aa8.93□□□□□ -0.98
CD44-215ENST00000525241 MRGPRX2Q96LB1 330 aa8.93□□□□□ -0.98
CD44-215ENST00000525241 GDF9O60383 454 aa8.92□□□□□ -0.98
CD44-215ENST00000525241 FOXC1Q12948 553 aa8.92□□□□□ -0.98
CD44-215ENST00000525241 TRIM67Q6ZTA4 783 aa8.92□□□□□ -0.98
CD44-215ENST00000525241 TRMT44Q8IYL2 757 aaKnown RBP8.91□□□□□ -0.98
CD44-215ENST00000525241 FAM174AQ8TBP5 190 aa8.91□□□□□ -0.98
CD44-215ENST00000525241 EIF4G2P78344 907 aaKnown RBP eCLIP8.89□□□□□ -0.99
CD44-215ENST00000525241 MPNDQ8N594 471 aa8.89□□□□□ -0.99
CD44-215ENST00000525241 ADAMTS19Q8TE59 1207 aa8.89□□□□□ -0.99
CD44-215ENST00000525241 ALG2Q9H553 416 aa8.89□□□□□ -0.99
CD44-215ENST00000525241 ZNF777Q9ULD5 760 aaPredicted RBP8.89□□□□□ -0.99
CD44-215ENST00000525241 PCDHB9Q9Y5E1 797 aa8.89□□□□□ -0.99
CD44-215ENST00000525241 TNFRSF10AO00220 468 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 SOX11P35716 441 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 PRR20EP86478 221 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 PRR20CP86479 221 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 PRR20DP86480 221 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 PRR20BP86481 221 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 PRR20AP86496 221 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 DZIP3Q86Y13 1208 aaKnown RBP8.88□□□□□ -0.99
CD44-215ENST00000525241 CDK15Q96Q40 435 aa8.88□□□□□ -0.99
CD44-215ENST00000525241 MCCD1P59942 119 aaPredicted RBP8.87□□□□□ -0.99
CD44-215ENST00000525241 SLC10A4Q96EP9 437 aa8.87□□□□□ -0.99
CD44-215ENST00000525241 TLL2Q9Y6L7 1015 aa8.87□□□□□ -0.99
CD44-215ENST00000525241 HDGFL1Q5TGJ6 251 aa8.86□□□□□ -0.99
CD44-215ENST00000525241 TOR4AQ9NXH8 423 aa8.86□□□□□ -0.99
CD44-215ENST00000525241 MAP4K5Q9Y4K4 846 aa8.86□□□□□ -0.99
CD44-215ENST00000525241 SEMA3FQ13275 785 aa8.85□□□□□ -0.99
CD44-215ENST00000525241 SNIP1Q8TAD8 396 aaKnown RBP8.85□□□□□ -0.99
CD44-215ENST00000525241 GLMNQ92990 594 aa8.85□□□□□ -0.99
CD44-215ENST00000525241 CEP126Q9P2H0 1117 aa8.85□□□□□ -0.99
CD44-215ENST00000525241 CDV3Q9UKY7 258 aaKnown RBP8.85□□□□□ -0.99
CD44-215ENST00000525241 GRM5P41594 1212 aa8.84□□□□□ -0.99
CD44-215ENST00000525241 ARID5BQ14865 1188 aa8.84□□□□□ -0.99
CD44-215ENST00000525241 VASH1Q7L8A9 365 aaPredicted RBP8.84□□□□□ -0.99
CD44-215ENST00000525241 ZNF592Q92610 1267 aa8.84□□□□□ -0.99
CD44-215ENST00000525241 ARID3CA6NKF2 412 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms