RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CABP1Q9NZU7 370 aa29.68■■■□□ 2.34
VPS28-203ENST00000524521 BCL9LQ86UU0 1499 aa29.68■■■□□ 2.34
VPS28-203ENST00000524521 CDK12Q9NYV4 1490 aaPredicted RBP29.65■■■□□ 2.34
VPS28-203ENST00000524521 ATRNO75882 1429 aa29.64■■■□□ 2.34
VPS28-203ENST00000524521 NUTM2GQ5VZR2 741 aa29.64■■■□□ 2.34
VPS28-203ENST00000524521 UNC5CLQ8IV45 518 aa29.64■■■□□ 2.34
VPS28-203ENST00000524521 ABCA3Q99758 1704 aa29.63■■■□□ 2.33
VPS28-203ENST00000524521 SLIT2O94813 1529 aa29.62■■■□□ 2.33
VPS28-203ENST00000524521 FAM83GA6ND36 823 aa29.62■■■□□ 2.33
VPS28-203ENST00000524521 ABTB2Q8N961 1025 aa29.6■■■□□ 2.33
VPS28-203ENST00000524521 CLSPNQ9HAW4 1339 aa29.6■■■□□ 2.33
VPS28-203ENST00000524521 GJD4Q96KN9 370 aaPredicted RBP29.59■■■□□ 2.33
VPS28-203ENST00000524521 RGS12O14924 1447 aa29.59■■■□□ 2.33
VPS28-203ENST00000524521 SBNO2Q9Y2G9 1366 aa29.57■■■□□ 2.32
VPS28-203ENST00000524521 TIMELESSQ9UNS1 1208 aa29.55■■■□□ 2.32
VPS28-203ENST00000524521 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.54■■■□□ 2.32
VPS28-203ENST00000524521 ATAD2Q6PL18 1390 aa29.53■■■□□ 2.32
VPS28-203ENST00000524521 CCER1Q8TC90 406 aaPredicted RBP29.53■■■□□ 2.32
VPS28-203ENST00000524521 PRDM11Q9NQV5 511 aa29.53■■■□□ 2.32
VPS28-203ENST00000524521 BTG4Q9NY30 223 aa29.53■■■□□ 2.32
VPS28-203ENST00000524521 CCDC9Q9Y3X0 531 aaKnown RBP29.53■■■□□ 2.32
VPS28-203ENST00000524521 BRD4O60885 1362 aaPredicted RBP29.52■■■□□ 2.32
VPS28-203ENST00000524521 NLRP13Q86W25 1043 aa29.52■■■□□ 2.32
VPS28-203ENST00000524521 PLCH1Q4KWH8 1693 aa29.52■■■□□ 2.32
VPS28-203ENST00000524521 USP6P35125 1406 aa29.52■■■□□ 2.32
VPS28-203ENST00000524521 CRYBG1Q9Y4K1 1723 aa29.51■■■□□ 2.32
VPS28-203ENST00000524521 ST20-MTHFSA0A0A6YYL1 179 aa29.51■■■□□ 2.31
VPS28-203ENST00000524521 ZC3H6P61129 1189 aaKnown RBP29.51■■■□□ 2.31
VPS28-203ENST00000524521 VPS72Q15906 364 aa29.51■■■□□ 2.31
VPS28-203ENST00000524521 ZNF692Q9BU19 519 aaPredicted RBP29.51■■■□□ 2.31
VPS28-203ENST00000524521 NWD2Q9ULI1 1742 aa29.5■■■□□ 2.31
VPS28-203ENST00000524521 UPF1Q92900 1129 aaKnown RBP eCLIP29.49■■■□□ 2.31
VPS28-203ENST00000524521 KIAA0232Q92628 1395 aa29.48■■■□□ 2.31
VPS28-203ENST00000524521 COL14A1Q05707 1796 aaKnown RBP29.47■■■□□ 2.31
VPS28-203ENST00000524521 NLRP6P59044 892 aa29.47■■■□□ 2.31
VPS28-203ENST00000524521 CHRNA2Q15822 529 aa29.47■■■□□ 2.31
VPS28-203ENST00000524521 TMC1Q8TDI8 760 aa29.46■■■□□ 2.31
VPS28-203ENST00000524521 PHRF1Q9P1Y6 1649 aaKnown RBP29.45■■■□□ 2.31
VPS28-203ENST00000524521 TESK2Q96S53 571 aa29.45■■■□□ 2.31
VPS28-203ENST00000524521 USP19O94966 1318 aa29.45■■■□□ 2.3
VPS28-203ENST00000524521 GLI3P10071 1580 aa29.44■■■□□ 2.3
VPS28-203ENST00000524521 GCP02774 474 aa29.43■■■□□ 2.3
VPS28-203ENST00000524521 SSH2Q76I76 1423 aa29.43■■■□□ 2.3
VPS28-203ENST00000524521 TTC21BQ7Z4L5 1316 aa29.43■■■□□ 2.3
VPS28-203ENST00000524521 KTN1Q86UP2 1357 aaKnown RBP29.42■■■□□ 2.3
VPS28-203ENST00000524521 SLC24A1O60721 1099 aa29.42■■■□□ 2.3
VPS28-203ENST00000524521 CPSF1Q10570 1443 aaKnown RBP29.41■■■□□ 2.3
VPS28-203ENST00000524521 PUS7Q96PZ0 661 aaKnown RBP29.41■■■□□ 2.3
VPS28-203ENST00000524521 SLC12A5Q9H2X9 1139 aa29.41■■■□□ 2.3
VPS28-203ENST00000524521 USP47Q96K76 1375 aa29.39■■■□□ 2.3
VPS28-203ENST00000524521 AKAP12Q02952 1782 aa29.39■■■□□ 2.3
VPS28-203ENST00000524521 NRAPQ86VF7 1730 aa29.39■■■□□ 2.3
VPS28-203ENST00000524521 SEPT12Q8IYM1 358 aa29.38■■■□□ 2.29
VPS28-203ENST00000524521 TTC21AQ8NDW8 1320 aa29.38■■■□□ 2.29
VPS28-203ENST00000524521 HDGFL2Q7Z4V5 671 aaPredicted RBP29.37■■■□□ 2.29
VPS28-203ENST00000524521 STRN4Q9NRL3 753 aa29.37■■■□□ 2.29
VPS28-203ENST00000524521 NRKQ7Z2Y5 1582 aa29.37■■■□□ 2.29
VPS28-203ENST00000524521 ZBTB7CA1YPR0 619 aa29.36■■■□□ 2.29
VPS28-203ENST00000524521 CPDO75976 1380 aa29.36■■■□□ 2.29
VPS28-203ENST00000524521 ONECUT3O60422 494 aaPredicted RBP29.35■■■□□ 2.29
VPS28-203ENST00000524521 EVA1CP58658 441 aa29.35■■■□□ 2.29
VPS28-203ENST00000524521 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.35■■■□□ 2.29
VPS28-203ENST00000524521 A0A0G2JS52 829 aa29.34■■■□□ 2.29
VPS28-203ENST00000524521 MYT1Q01538 1121 aa29.34■■■□□ 2.29
VPS28-203ENST00000524521 FAM98CQ17RN3 349 aaKnown RBP29.34■■■□□ 2.29
VPS28-203ENST00000524521 TERF2IPQ9NYB0 399 aa29.34■■■□□ 2.29
VPS28-203ENST00000524521 PIK3C2AO00443 1686 aa29.34■■■□□ 2.29
VPS28-203ENST00000524521 TMF1P82094 1093 aa29.33■■■□□ 2.29
VPS28-203ENST00000524521 SPATA31A5Q5VU36 1347 aa29.33■■■□□ 2.29
VPS28-203ENST00000524521 SPATA31A7Q8IWB4 1347 aa29.33■■■□□ 2.29
VPS28-203ENST00000524521 CD163L1Q9NR16 1453 aa29.32■■■□□ 2.28
VPS28-203ENST00000524521 SLIT3O75094 1523 aa29.3■■■□□ 2.28
VPS28-203ENST00000524521 MON2Q7Z3U7 1717 aa29.29■■■□□ 2.28
VPS28-203ENST00000524521 SOX12O15370 315 aa29.29■■■□□ 2.28
VPS28-203ENST00000524521 CAMTA1Q9Y6Y1 1673 aa29.28■■■□□ 2.28
VPS28-203ENST00000524521 KCNH5Q8NCM2 988 aa29.28■■■□□ 2.28
VPS28-203ENST00000524521 ZRANB1Q9UGI0 708 aa29.28■■■□□ 2.28
VPS28-203ENST00000524521 BRWD3Q6RI45 1802 aa29.27■■■□□ 2.28
VPS28-203ENST00000524521 A0A1W2PP64 1363 aa29.26■■■□□ 2.28
VPS28-203ENST00000524521 SPATA31A1Q5TZJ5 1347 aa29.26■■■□□ 2.27
VPS28-203ENST00000524521 KRT27Q7Z3Y8 459 aa29.26■■■□□ 2.27
VPS28-203ENST00000524521 NME9Q86XW9 330 aa29.26■■■□□ 2.27
VPS28-203ENST00000524521 USP35Q9P2H5 1018 aa29.26■■■□□ 2.27
VPS28-203ENST00000524521 LARP1Q6PKG0 1096 aaKnown RBP29.25■■■□□ 2.27
VPS28-203ENST00000524521 NINLQ9Y2I6 1382 aa29.25■■■□□ 2.27
VPS28-203ENST00000524521 EDC4Q6P2E9 1401 aaKnown RBP29.23■■■□□ 2.27
VPS28-203ENST00000524521 LMO7Q8WWI1 1683 aa29.23■■■□□ 2.27
VPS28-203ENST00000524521 AATKQ6ZMQ8 1374 aa29.23■■■□□ 2.27
VPS28-203ENST00000524521 CDCA8Q53HL2 280 aa29.22■■■□□ 2.27
VPS28-203ENST00000524521 ARHGEF25Q86VW2 580 aa29.22■■■□□ 2.27
VPS28-203ENST00000524521 USP31Q70CQ4 1352 aa29.21■■■□□ 2.27
VPS28-203ENST00000524521 CCDC125Q86Z20 511 aa29.19■■■□□ 2.26
VPS28-203ENST00000524521 AXIN2Q9Y2T1 843 aa29.18■■■□□ 2.26
VPS28-203ENST00000524521 COL5A2P05997 1499 aaPredicted RBP29.17■■■□□ 2.26
VPS28-203ENST00000524521 TCP11L2Q8N4U5 519 aa29.16■■■□□ 2.26
VPS28-203ENST00000524521 BARGINQ6ZT62 677 aa29.15■■■□□ 2.26
VPS28-203ENST00000524521 ANKRD36BQ8N2N9 1353 aa29.14■■■□□ 2.26
VPS28-203ENST00000524521 EIF4G2P78344 907 aaKnown RBP eCLIP29.14■■■□□ 2.26
VPS28-203ENST00000524521 COL18A1P39060 1754 aa29.13■■■□□ 2.25
VPS28-203ENST00000524521 TOM1L2Q6ZVM7 507 aa29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms