RNA–Protein interactions for RNA: ENST00000523966.5

SKP1-212, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 899 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-212ENST00000523966 ZC3H4Q9UPT8 1303 aaKnown RBP7.39□□□□□ -1.23
SKP1-212ENST00000523966 EIF4G2P78344 907 aaKnown RBP eCLIP7.39□□□□□ -1.23
SKP1-212ENST00000523966 KCNC4Q03721 635 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 VAC14Q08AM6 782 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 SEMA3FQ13275 785 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 IRF5Q13568 498 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 PRDM9Q9NQV7 894 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 MAP10Q9P2G4 905 aa7.39□□□□□ -1.23
SKP1-212ENST00000523966 F12P00748 615 aaPredicted RBP7.38□□□□□ -1.23
SKP1-212ENST00000523966 SOX11P35716 441 aa7.38□□□□□ -1.23
SKP1-212ENST00000523966 GGCXP38435 758 aa7.38□□□□□ -1.23
SKP1-212ENST00000523966 NBPF14Q5TI25 921 aa7.38□□□□□ -1.23
SKP1-212ENST00000523966 GLMNQ92990 594 aa7.38□□□□□ -1.23
SKP1-212ENST00000523966 PTK2Q05397 1052 aa7.37□□□□□ -1.23
SKP1-212ENST00000523966 HDGFL1Q5TGJ6 251 aa7.37□□□□□ -1.23
SKP1-212ENST00000523966 ZNF592Q92610 1267 aa7.37□□□□□ -1.23
SKP1-212ENST00000523966 GPKOWQ92917 476 aaPredicted RBP eCLIP7.37□□□□□ -1.23
SKP1-212ENST00000523966 POM121CA8CG34 1229 aa7.36□□□□□ -1.23
SKP1-212ENST00000523966 ZBBXA8MT70 800 aa7.36□□□□□ -1.23
SKP1-212ENST00000523966 NR1H3Q13133 447 aa7.36□□□□□ -1.23
SKP1-212ENST00000523966 SPNS2Q8IVW8 549 aa7.36□□□□□ -1.23
SKP1-212ENST00000523966 ZBTB24O43167 697 aaPredicted RBP7.35□□□□□ -1.23
SKP1-212ENST00000523966 S1PR4O95977 384 aa7.35□□□□□ -1.23
SKP1-212ENST00000523966 NKX2-3Q8TAU0 364 aa7.35□□□□□ -1.23
SKP1-212ENST00000523966 PDXDC2PQ6P474 469 aa7.34□□□□□ -1.23
SKP1-212ENST00000523966 UNC93B1Q9H1C4 597 aa7.34□□□□□ -1.23
SKP1-212ENST00000523966 GPSM3Q9Y4H4 160 aa7.34□□□□□ -1.23
SKP1-212ENST00000523966 MCCD1P59942 119 aaPredicted RBP7.33□□□□□ -1.24
SKP1-212ENST00000523966 AGERQ15109 404 aa7.33□□□□□ -1.24
SKP1-212ENST00000523966 FCF1Q9Y324 198 aaKnown RBP7.33□□□□□ -1.24
SKP1-212ENST00000523966 ZBTB33Q86T24 672 aa7.32□□□□□ -1.24
SKP1-212ENST00000523966 ARHGAP9Q9BRR9 750 aa7.32□□□□□ -1.24
SKP1-212ENST00000523966 GPR37L1O60883 481 aa7.31□□□□□ -1.24
SKP1-212ENST00000523966 FBXO45P0C2W1 286 aa7.31□□□□□ -1.24
SKP1-212ENST00000523966 ACIN1Q9UKV3 1341 aaKnown RBP7.3□□□□□ -1.24
SKP1-212ENST00000523966 ITGBL1O95965 494 aaPredicted RBP7.3□□□□□ -1.24
SKP1-212ENST00000523966 PTCRAQ6ISU1 281 aaPredicted RBP7.3□□□□□ -1.24
SKP1-212ENST00000523966 BPHLQ86WA6 291 aaPredicted RBP7.3□□□□□ -1.24
SKP1-212ENST00000523966 ALG2Q9H553 416 aa7.3□□□□□ -1.24
SKP1-212ENST00000523966 PCDHB9Q9Y5E1 797 aa7.3□□□□□ -1.24
SKP1-212ENST00000523966 DZIP3Q86Y13 1208 aaKnown RBP7.29□□□□□ -1.24
SKP1-212ENST00000523966 BAP1Q92560 729 aa7.29□□□□□ -1.24
SKP1-212ENST00000523966 MAGEB6P1A0A0J9YX57 407 aa7.28□□□□□ -1.24
SKP1-212ENST00000523966 PPEF1O14829 653 aaPredicted RBP7.28□□□□□ -1.24
SKP1-212ENST00000523966 LINC01559Q495D7 138 aa7.28□□□□□ -1.24
SKP1-212ENST00000523966 ANKLE1Q8NAG6 615 aa7.28□□□□□ -1.24
SKP1-212ENST00000523966 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.28□□□□□ -1.24
SKP1-212ENST00000523966 PPP1R15AO75807 674 aaPredicted RBP7.27□□□□□ -1.25
SKP1-212ENST00000523966 RFX1P22670 979 aa7.27□□□□□ -1.25
SKP1-212ENST00000523966 SLFNL1Q499Z3 407 aa7.27□□□□□ -1.25
SKP1-212ENST00000523966 ADAM32Q8TC27 787 aa7.27□□□□□ -1.25
SKP1-212ENST00000523966 CARD14Q9BXL6 1004 aa7.27□□□□□ -1.25
SKP1-212ENST00000523966 PPP1R12CQ9BZL4 782 aa7.27□□□□□ -1.25
SKP1-212ENST00000523966 RNF223E7ERA6 249 aa7.26□□□□□ -1.25
SKP1-212ENST00000523966 ZNF511Q8NB15 262 aa7.26□□□□□ -1.25
SKP1-212ENST00000523966 ADAMTS19Q8TE59 1207 aa7.26□□□□□ -1.25
SKP1-212ENST00000523966 TFIP11Q9UBB9 837 aaKnown RBP7.26□□□□□ -1.25
SKP1-212ENST00000523966 PALM3A6NDB9 673 aaPredicted RBP7.25□□□□□ -1.25
SKP1-212ENST00000523966 CD2BP2O95400 341 aaKnown RBP7.25□□□□□ -1.25
SKP1-212ENST00000523966 LMOD1P29536 600 aaPredicted RBP7.25□□□□□ -1.25
SKP1-212ENST00000523966 MMRN1Q13201 1228 aa7.25□□□□□ -1.25
SKP1-212ENST00000523966 PPP1R18Q6NYC8 613 aa7.25□□□□□ -1.25
SKP1-212ENST00000523966 PDE4CQ08493 712 aa7.24□□□□□ -1.25
SKP1-212ENST00000523966 SH3BP5LQ7L8J4 393 aa7.24□□□□□ -1.25
SKP1-212ENST00000523966 SLC10A4Q96EP9 437 aa7.24□□□□□ -1.25
SKP1-212ENST00000523966 SKIP12755 728 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 PDIA4P13667 645 aaKnown RBP7.23□□□□□ -1.25
SKP1-212ENST00000523966 RPIAP49247 311 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 RNF135Q8IUD6 432 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 FOXJ1Q92949 421 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 PBXIP1Q96AQ6 731 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 CEP126Q9P2H0 1117 aa7.23□□□□□ -1.25
SKP1-212ENST00000523966 ATP9BO43861 1147 aa7.22□□□□□ -1.25
SKP1-212ENST00000523966 TRIM32Q13049 653 aa7.22□□□□□ -1.25
SKP1-212ENST00000523966 RNF20Q5VTR2 975 aa7.22□□□□□ -1.25
SKP1-212ENST00000523966 NFATC2IPQ8NCF5 419 aa7.22□□□□□ -1.25
SKP1-212ENST00000523966 FAM174AQ8TBP5 190 aa7.22□□□□□ -1.25
SKP1-212ENST00000523966 CDV3Q9UKY7 258 aaKnown RBP7.22□□□□□ -1.25
SKP1-212ENST00000523966 WNT7BP56706 349 aa7.21□□□□□ -1.26
SKP1-212ENST00000523966 SH3BP2P78314 561 aa7.21□□□□□ -1.26
SKP1-212ENST00000523966 NBPF20Q3BBV1 942 aa7.21□□□□□ -1.26
SKP1-212ENST00000523966 TBC1D9Q6ZT07 1266 aa7.21□□□□□ -1.26
SKP1-212ENST00000523966 SH3RF1Q7Z6J0 888 aa7.21□□□□□ -1.26
SKP1-212ENST00000523966 VARSP26640 1264 aaKnown RBP7.2□□□□□ -1.26
SKP1-212ENST00000523966 ERFEQ4G0M1 354 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 CFAP70Q5T0N1 1121 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 EHBP1Q8NDI1 1231 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 TRIM52Q96A61 297 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 UCN2Q96RP3 112 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 OCSTAMPQ9BR26 566 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 VRTNQ9H8Y1 702 aa7.2□□□□□ -1.26
SKP1-212ENST00000523966 LZTS3O60299 673 aaPredicted RBP7.19□□□□□ -1.26
SKP1-212ENST00000523966 CSB-PGBD3P0DP91 1061 aa7.19□□□□□ -1.26
SKP1-212ENST00000523966 MAP7D1Q3KQU3 841 aa7.19□□□□□ -1.26
SKP1-212ENST00000523966 CCDC125Q86Z20 511 aa7.19□□□□□ -1.26
SKP1-212ENST00000523966 ESF1Q9H501 851 aaKnown RBP7.19□□□□□ -1.26
SKP1-212ENST00000523966 MAFBQ9Y5Q3 323 aaPredicted RBP7.19□□□□□ -1.26
SKP1-212ENST00000523966 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.18□□□□□ -1.26
SKP1-212ENST00000523966 USP17L5A8MUK1 530 aa7.18□□□□□ -1.26
SKP1-212ENST00000523966 CDCA8Q53HL2 280 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms