RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SLIT2O94813 1529 aa13.78□□□□□ -0.2
RNF4-221ENST00000513643 CPSF1Q10570 1443 aaKnown RBP13.77□□□□□ -0.21
RNF4-221ENST00000513643 ATRNO75882 1429 aa13.76□□□□□ -0.21
RNF4-221ENST00000513643 ATAD2Q6PL18 1390 aa13.76□□□□□ -0.21
RNF4-221ENST00000513643 FAM83GA6ND36 823 aa13.76□□□□□ -0.21
RNF4-221ENST00000513643 CCER1Q8TC90 406 aaPredicted RBP13.76□□□□□ -0.21
RNF4-221ENST00000513643 QTRT2Q9H974 415 aaKnown RBP13.76□□□□□ -0.21
RNF4-221ENST00000513643 CDK12Q9NYV4 1490 aaPredicted RBP13.75□□□□□ -0.21
RNF4-221ENST00000513643 USP6P35125 1406 aa13.75□□□□□ -0.21
RNF4-221ENST00000513643 SLC24A1O60721 1099 aa13.75□□□□□ -0.21
RNF4-221ENST00000513643 RXRBP28702 533 aa13.75□□□□□ -0.21
RNF4-221ENST00000513643 ZNF692Q9BU19 519 aaPredicted RBP13.75□□□□□ -0.21
RNF4-221ENST00000513643 USP21Q9UK80 565 aa13.75□□□□□ -0.21
RNF4-221ENST00000513643 USP19O94966 1318 aa13.74□□□□□ -0.21
RNF4-221ENST00000513643 RBM6P78332 1123 aaKnown RBP13.74□□□□□ -0.21
RNF4-221ENST00000513643 CD163L1Q9NR16 1453 aa13.74□□□□□ -0.21
RNF4-221ENST00000513643 USP47Q96K76 1375 aa13.73□□□□□ -0.21
RNF4-221ENST00000513643 PAK3O75914 559 aaPredicted RBP13.73□□□□□ -0.21
RNF4-221ENST00000513643 LMOD2Q6P5Q4 547 aa13.73□□□□□ -0.21
RNF4-221ENST00000513643 UNC5CLQ8IV45 518 aa13.73□□□□□ -0.21
RNF4-221ENST00000513643 TRPC5Q9UL62 973 aaPredicted RBP13.73□□□□□ -0.21
RNF4-221ENST00000513643 MARF1Q9Y4F3 1742 aaKnown RBP13.73□□□□□ -0.21
RNF4-221ENST00000513643 CRYBG1Q9Y4K1 1723 aa13.73□□□□□ -0.21
RNF4-221ENST00000513643 ABCA3Q99758 1704 aa13.72□□□□□ -0.21
RNF4-221ENST00000513643 ABTB2Q8N961 1025 aa13.71□□□□□ -0.21
RNF4-221ENST00000513643 SLC12A5Q9H2X9 1139 aa13.71□□□□□ -0.21
RNF4-221ENST00000513643 TTC21BQ7Z4L5 1316 aa13.7□□□□□ -0.22
RNF4-221ENST00000513643 ONECUT3O60422 494 aaPredicted RBP13.7□□□□□ -0.22
RNF4-221ENST00000513643 GJD4Q96KN9 370 aaPredicted RBP13.7□□□□□ -0.22
RNF4-221ENST00000513643 CPDO75976 1380 aa13.7□□□□□ -0.22
RNF4-221ENST00000513643 VPS72Q15906 364 aa13.69□□□□□ -0.22
RNF4-221ENST00000513643 NLRP13Q86W25 1043 aa13.69□□□□□ -0.22
RNF4-221ENST00000513643 TTC21AQ8NDW8 1320 aa13.68□□□□□ -0.22
RNF4-221ENST00000513643 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.68□□□□□ -0.22
RNF4-221ENST00000513643 GCP02774 474 aa13.68□□□□□ -0.22
RNF4-221ENST00000513643 NUTM2GQ5VZR2 741 aa13.68□□□□□ -0.22
RNF4-221ENST00000513643 NINLQ9Y2I6 1382 aa13.68□□□□□ -0.22
RNF4-221ENST00000513643 RGS12O14924 1447 aa13.67□□□□□ -0.22
RNF4-221ENST00000513643 HAP1P54257 671 aaPredicted RBP13.67□□□□□ -0.22
RNF4-221ENST00000513643 USP31Q70CQ4 1352 aa13.67□□□□□ -0.22
RNF4-221ENST00000513643 KIAA0232Q92628 1395 aa13.67□□□□□ -0.22
RNF4-221ENST00000513643 AKAP12Q02952 1782 aa13.66□□□□□ -0.22
RNF4-221ENST00000513643 EP400Q96L91 3159 aa13.66□□□□□ -0.22
RNF4-221ENST00000513643 SLIT3O75094 1523 aa13.66□□□□□ -0.22
RNF4-221ENST00000513643 TMF1P82094 1093 aa13.66□□□□□ -0.22
RNF4-221ENST00000513643 NWD2Q9ULI1 1742 aa13.66□□□□□ -0.22
RNF4-221ENST00000513643 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
RNF4-221ENST00000513643 PLEKHG5O94827 1062 aa13.65□□□□□ -0.22
RNF4-221ENST00000513643 NLRP6P59044 892 aa13.65□□□□□ -0.22
RNF4-221ENST00000513643 BTG4Q9NY30 223 aa13.65□□□□□ -0.22
RNF4-221ENST00000513643 NRKQ7Z2Y5 1582 aa13.65□□□□□ -0.22
RNF4-221ENST00000513643 PHRF1Q9P1Y6 1649 aaKnown RBP13.64□□□□□ -0.23
RNF4-221ENST00000513643 COL14A1Q05707 1796 aaKnown RBP13.64□□□□□ -0.23
RNF4-221ENST00000513643 PIK3C2AO00443 1686 aa13.64□□□□□ -0.23
RNF4-221ENST00000513643 GLI3P10071 1580 aa13.64□□□□□ -0.23
RNF4-221ENST00000513643 A0A1W2PP64 1363 aa13.64□□□□□ -0.23
RNF4-221ENST00000513643 ZC3H6P61129 1189 aaKnown RBP13.64□□□□□ -0.23
RNF4-221ENST00000513643 PRDM11Q9NQV5 511 aa13.64□□□□□ -0.23
RNF4-221ENST00000513643 TERF2IPQ9NYB0 399 aa13.64□□□□□ -0.23
RNF4-221ENST00000513643 TMC1Q8TDI8 760 aa13.63□□□□□ -0.23
RNF4-221ENST00000513643 MON2Q7Z3U7 1717 aa13.63□□□□□ -0.23
RNF4-221ENST00000513643 EDC4Q6P2E9 1401 aaKnown RBP13.63□□□□□ -0.23
RNF4-221ENST00000513643 SPATA31A5Q5VU36 1347 aa13.63□□□□□ -0.23
RNF4-221ENST00000513643 SPATA31A7Q8IWB4 1347 aa13.63□□□□□ -0.23
RNF4-221ENST00000513643 PLCH1Q4KWH8 1693 aa13.63□□□□□ -0.23
RNF4-221ENST00000513643 NRAPQ86VF7 1730 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 AATKQ6ZMQ8 1374 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 CHRNA2Q15822 529 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 CDCA8Q53HL2 280 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
RNF4-221ENST00000513643 ARHGEF25Q86VW2 580 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 CAMTA1Q9Y6Y1 1673 aa13.62□□□□□ -0.23
RNF4-221ENST00000513643 ANKRD36BQ8N2N9 1353 aa13.61□□□□□ -0.23
RNF4-221ENST00000513643 LMO7Q8WWI1 1683 aa13.61□□□□□ -0.23
RNF4-221ENST00000513643 EIF4G2P78344 907 aaKnown RBP eCLIP13.61□□□□□ -0.23
RNF4-221ENST00000513643 NME9Q86XW9 330 aa13.61□□□□□ -0.23
RNF4-221ENST00000513643 KCNH5Q8NCM2 988 aa13.61□□□□□ -0.23
RNF4-221ENST00000513643 UPF1Q92900 1129 aaKnown RBP eCLIP13.61□□□□□ -0.23
RNF4-221ENST00000513643 ZRANB1Q9UGI0 708 aa13.61□□□□□ -0.23
RNF4-221ENST00000513643 USP54Q70EL1 1684 aa13.6□□□□□ -0.23
RNF4-221ENST00000513643 HSPA5P11021 654 aaKnown RBP13.6□□□□□ -0.23
RNF4-221ENST00000513643 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.59□□□□□ -0.23
RNF4-221ENST00000513643 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
RNF4-221ENST00000513643 SPATA31A1Q5TZJ5 1347 aa13.59□□□□□ -0.23
RNF4-221ENST00000513643 NFAT5O94916 1531 aa13.59□□□□□ -0.23
RNF4-221ENST00000513643 OVOS2A0A0J9YW53 1432 aa13.58□□□□□ -0.24
RNF4-221ENST00000513643 OVOS2Q6IE36 1432 aa13.58□□□□□ -0.24
RNF4-221ENST00000513643 SEPT12Q8IYM1 358 aa13.58□□□□□ -0.24
RNF4-221ENST00000513643 CARD14Q9BXL6 1004 aa13.58□□□□□ -0.24
RNF4-221ENST00000513643 COL18A1P39060 1754 aa13.58□□□□□ -0.24
RNF4-221ENST00000513643 C11orf95C9JLR9 678 aaPredicted RBP13.56□□□□□ -0.24
RNF4-221ENST00000513643 FYB1O15117 783 aa13.56□□□□□ -0.24
RNF4-221ENST00000513643 LARP1Q6PKG0 1096 aaKnown RBP13.56□□□□□ -0.24
RNF4-221ENST00000513643 BARGINQ6ZT62 677 aa13.56□□□□□ -0.24
RNF4-221ENST00000513643 COL5A2P05997 1499 aaPredicted RBP13.55□□□□□ -0.24
RNF4-221ENST00000513643 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
RNF4-221ENST00000513643 ABCC6O95255 1503 aa13.54□□□□□ -0.24
RNF4-221ENST00000513643 STRN4Q9NRL3 753 aa13.53□□□□□ -0.24
RNF4-221ENST00000513643 THRAP3Q9Y2W1 955 aaKnown RBP13.53□□□□□ -0.24
RNF4-221ENST00000513643 EVA1CP58658 441 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 198.4 ms