RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TNS3Q68CZ2 1445 aa20.62■□□□□ 0.89
NUP54-213ENST00000513352 PLEKHG5O94827 1062 aa20.62■□□□□ 0.89
NUP54-213ENST00000513352 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.62■□□□□ 0.89
NUP54-213ENST00000513352 LRRC59Q96AG4 307 aaKnown RBP20.62■□□□□ 0.89
NUP54-213ENST00000513352 PANK3Q9H999 370 aa20.62■□□□□ 0.89
NUP54-213ENST00000513352 NRKQ7Z2Y5 1582 aa20.62■□□□□ 0.89
NUP54-213ENST00000513352 EDC4Q6P2E9 1401 aaKnown RBP20.61■□□□□ 0.89
NUP54-213ENST00000513352 SBNO1A3KN83 1393 aa20.61■□□□□ 0.89
NUP54-213ENST00000513352 SPATA31A3Q5VYP0 1347 aa20.6■□□□□ 0.89
NUP54-213ENST00000513352 NSD3Q9BZ95 1437 aa20.6■□□□□ 0.89
NUP54-213ENST00000513352 BRD4O60885 1362 aaPredicted RBP20.59■□□□□ 0.89
NUP54-213ENST00000513352 TTC21BQ7Z4L5 1316 aa20.59■□□□□ 0.89
NUP54-213ENST00000513352 NUTM2GQ5VZR2 741 aa20.59■□□□□ 0.89
NUP54-213ENST00000513352 ALS2Q96Q42 1657 aa20.58■□□□□ 0.89
NUP54-213ENST00000513352 ABTB2Q8N961 1025 aa20.58■□□□□ 0.89
NUP54-213ENST00000513352 ARHGEF10O15013 1369 aa20.58■□□□□ 0.88
NUP54-213ENST00000513352 ILDR1Q86SU0 546 aaPredicted RBP20.57■□□□□ 0.88
NUP54-213ENST00000513352 JCADQ9P266 1359 aa20.57■□□□□ 0.88
NUP54-213ENST00000513352 TTC21AQ8NDW8 1320 aa20.56■□□□□ 0.88
NUP54-213ENST00000513352 CARD14Q9BXL6 1004 aa20.56■□□□□ 0.88
NUP54-213ENST00000513352 PNPLA6Q8IY17 1366 aa20.56■□□□□ 0.88
NUP54-213ENST00000513352 KIF20BQ96Q89 1820 aa20.55■□□□□ 0.88
NUP54-213ENST00000513352 PIK3C2AO00443 1686 aa20.55■□□□□ 0.88
NUP54-213ENST00000513352 SHPRHQ149N8 1683 aa20.55■□□□□ 0.88
NUP54-213ENST00000513352 SSH2Q76I76 1423 aa20.55■□□□□ 0.88
NUP54-213ENST00000513352 DDX10Q13206 875 aaKnown RBP20.55■□□□□ 0.88
NUP54-213ENST00000513352 HAP1P54257 671 aaPredicted RBP20.54■□□□□ 0.88
NUP54-213ENST00000513352 NME9Q86XW9 330 aa20.54■□□□□ 0.88
NUP54-213ENST00000513352 KNSTRNQ9Y448 316 aa20.54■□□□□ 0.88
NUP54-213ENST00000513352 NLRP6P59044 892 aa20.53■□□□□ 0.88
NUP54-213ENST00000513352 CGNL1Q0VF96 1302 aa20.53■□□□□ 0.88
NUP54-213ENST00000513352 NUTM2BA6NNL0 878 aaPredicted RBP20.51■□□□□ 0.87
NUP54-213ENST00000513352 NUTM2EB1AL46 878 aaPredicted RBP20.51■□□□□ 0.87
NUP54-213ENST00000513352 CNGB1Q14028 1251 aaPredicted RBP20.51■□□□□ 0.87
NUP54-213ENST00000513352 NLRP13Q86W25 1043 aa20.51■□□□□ 0.87
NUP54-213ENST00000513352 NUTM2AQ8IVF1 878 aaPredicted RBP20.51■□□□□ 0.87
NUP54-213ENST00000513352 ZRANB1Q9UGI0 708 aa20.51■□□□□ 0.87
NUP54-213ENST00000513352 COL22A1Q8NFW1 1626 aaPredicted RBP20.5■□□□□ 0.87
NUP54-213ENST00000513352 CABLES1Q8TDN4 633 aa20.5■□□□□ 0.87
NUP54-213ENST00000513352 GGNBP2Q9H3C7 697 aa20.5■□□□□ 0.87
NUP54-213ENST00000513352 ABCA3Q99758 1704 aa20.48■□□□□ 0.87
NUP54-213ENST00000513352 MED1Q15648 1581 aaPredicted RBP20.48■□□□□ 0.87
NUP54-213ENST00000513352 SOX12O15370 315 aa20.48■□□□□ 0.87
NUP54-213ENST00000513352 COG3Q96JB2 828 aa20.48■□□□□ 0.87
NUP54-213ENST00000513352 PHRF1Q9P1Y6 1649 aaKnown RBP20.47■□□□□ 0.87
NUP54-213ENST00000513352 FYB1O15117 783 aa20.47■□□□□ 0.87
NUP54-213ENST00000513352 MARF1Q9Y4F3 1742 aaKnown RBP20.46■□□□□ 0.87
NUP54-213ENST00000513352 SPATA31A6Q5VVP1 1343 aa20.46■□□□□ 0.87
NUP54-213ENST00000513352 CRYBG1Q9Y4K1 1723 aa20.45■□□□□ 0.86
NUP54-213ENST00000513352 USP19O94966 1318 aa20.45■□□□□ 0.86
NUP54-213ENST00000513352 USP31Q70CQ4 1352 aa20.45■□□□□ 0.86
NUP54-213ENST00000513352 ANKRD26Q9UPS8 1709 aa20.44■□□□□ 0.86
NUP54-213ENST00000513352 ZBTB7CA1YPR0 619 aa20.44■□□□□ 0.86
NUP54-213ENST00000513352 CC2D1BQ5T0F9 858 aaKnown RBP20.44■□□□□ 0.86
NUP54-213ENST00000513352 USP54Q70EL1 1684 aa20.44■□□□□ 0.86
NUP54-213ENST00000513352 OVOS2A0A0J9YW53 1432 aa20.44■□□□□ 0.86
NUP54-213ENST00000513352 OVOS2Q6IE36 1432 aa20.44■□□□□ 0.86
NUP54-213ENST00000513352 PER1O15534 1290 aaPredicted RBP20.43■□□□□ 0.86
NUP54-213ENST00000513352 ADAMTS2O95450 1211 aa20.43■□□□□ 0.86
NUP54-213ENST00000513352 MEX3CQ5U5Q3 659 aaKnown RBP20.43■□□□□ 0.86
NUP54-213ENST00000513352 NSD2O96028 1365 aa20.43■□□□□ 0.86
NUP54-213ENST00000513352 SLIT3O75094 1523 aa20.42■□□□□ 0.86
NUP54-213ENST00000513352 GCP02774 474 aa20.41■□□□□ 0.86
NUP54-213ENST00000513352 AMER1Q5JTC6 1135 aaPredicted RBP20.41■□□□□ 0.86
NUP54-213ENST00000513352 LRP6O75581 1613 aa20.4■□□□□ 0.86
NUP54-213ENST00000513352 TNNT2P45379 298 aaPredicted RBP20.4■□□□□ 0.86
NUP54-213ENST00000513352 ZC3H6P61129 1189 aaKnown RBP20.4■□□□□ 0.86
NUP54-213ENST00000513352 MORC1Q86VD1 984 aa20.4■□□□□ 0.86
NUP54-213ENST00000513352 KCNH5Q8NCM2 988 aa20.4■□□□□ 0.86
NUP54-213ENST00000513352 NFAT5O94916 1531 aa20.37■□□□□ 0.85
NUP54-213ENST00000513352 KIAA0232Q92628 1395 aa20.36■□□□□ 0.85
NUP54-213ENST00000513352 PRDM11Q9NQV5 511 aa20.36■□□□□ 0.85
NUP54-213ENST00000513352 NPC1L1Q9UHC9 1359 aa20.35■□□□□ 0.85
NUP54-213ENST00000513352 C8orf37Q96NL8 207 aa20.35■□□□□ 0.85
NUP54-213ENST00000513352 LTN1O94822 1766 aa20.35■□□□□ 0.85
NUP54-213ENST00000513352 FBLN1P23142 703 aa20.34■□□□□ 0.85
NUP54-213ENST00000513352 CHRNA2Q15822 529 aa20.34■□□□□ 0.85
NUP54-213ENST00000513352 MAP2P11137 1827 aaKnown RBP20.32■□□□□ 0.84
NUP54-213ENST00000513352 RRS1Q15050 365 aaKnown RBP20.32■□□□□ 0.84
NUP54-213ENST00000513352 NGLY1Q96IV0 654 aa20.32■□□□□ 0.84
NUP54-213ENST00000513352 PPM1GO15355 546 aaPredicted RBP20.31■□□□□ 0.84
NUP54-213ENST00000513352 CPDO75976 1380 aa20.31■□□□□ 0.84
NUP54-213ENST00000513352 COL14A1Q05707 1796 aaKnown RBP20.31■□□□□ 0.84
NUP54-213ENST00000513352 PLCH1Q4KWH8 1693 aa20.3■□□□□ 0.84
NUP54-213ENST00000513352 FAM83GA6ND36 823 aa20.3■□□□□ 0.84
NUP54-213ENST00000513352 AMPHP49418 695 aa20.3■□□□□ 0.84
NUP54-213ENST00000513352 MAP3K19Q56UN5 1328 aa20.29■□□□□ 0.84
NUP54-213ENST00000513352 ARHGEF25Q86VW2 580 aa20.29■□□□□ 0.84
NUP54-213ENST00000513352 AATKQ6ZMQ8 1374 aa20.27■□□□□ 0.84
NUP54-213ENST00000513352 EMILIN1Q9Y6C2 1016 aa20.27■□□□□ 0.84
NUP54-213ENST00000513352 AFF2P51816 1311 aa20.27■□□□□ 0.83
NUP54-213ENST00000513352 RGPD5Q99666 1765 aa20.26■□□□□ 0.83
NUP54-213ENST00000513352 BTG4Q9NY30 223 aa20.25■□□□□ 0.83
NUP54-213ENST00000513352 PEAK1Q9H792 1746 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 PARD3Q8TEW0 1356 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 COL18A1P39060 1754 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 LMO7Q8WWI1 1683 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 ANP32CO43423 234 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 STRN4Q9NRL3 753 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 POLKQ9UBT6 870 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms