RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 KIF20BQ96Q89 1820 aa14.4□□□□□ -0.1
SH3RF1-203ENST00000508685 BCL11AQ9H165 835 aa14.39□□□□□ -0.11
SH3RF1-203ENST00000508685 PRR36Q9H6K5 1346 aa14.39□□□□□ -0.11
SH3RF1-203ENST00000508685 CPSF1Q10570 1443 aaKnown RBP14.39□□□□□ -0.11
SH3RF1-203ENST00000508685 CFAP53Q96M91 514 aa14.39□□□□□ -0.11
SH3RF1-203ENST00000508685 AMOTL2Q9Y2J4 779 aa14.38□□□□□ -0.11
SH3RF1-203ENST00000508685 NUTM2FA1L443 756 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 CCDC61Q9Y6R9 512 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 ADGRB2O60241 1585 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 CDC42BPGQ6DT37 1551 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 GOLGA2Q08379 1002 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 DUSP27Q5VZP5 1158 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 TBX22Q9Y458 520 aa14.37□□□□□ -0.11
SH3RF1-203ENST00000508685 FBLN1P23142 703 aa14.36□□□□□ -0.11
SH3RF1-203ENST00000508685 SPINK5Q9NQ38 1064 aaPredicted RBP14.36□□□□□ -0.11
SH3RF1-203ENST00000508685 EDC4Q6P2E9 1401 aaKnown RBP14.36□□□□□ -0.11
SH3RF1-203ENST00000508685 COL3A1P02461 1466 aaPredicted RBP14.35□□□□□ -0.11
SH3RF1-203ENST00000508685 NPHP4O75161 1426 aaPredicted RBP14.35□□□□□ -0.11
SH3RF1-203ENST00000508685 DIP2AQ14689 1571 aa14.35□□□□□ -0.11
SH3RF1-203ENST00000508685 IQSEC2Q5JU85 1478 aa14.35□□□□□ -0.11
SH3RF1-203ENST00000508685 U2AF1L5P0DN76 240 aaPredicted RBP14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 U2AF1Q01081 240 aaKnown RBP eCLIP14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 PTCH1Q13635 1447 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 NME9Q86XW9 330 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 NGEFQ8N5V2 710 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 RRP7AQ9Y3A4 280 aaKnown RBP14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 NEUROD2Q15784 382 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 RUNDC1Q96C34 613 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 ZRANB1Q9UGI0 708 aa14.34□□□□□ -0.11
SH3RF1-203ENST00000508685 MON2Q7Z3U7 1717 aa14.33□□□□□ -0.11
SH3RF1-203ENST00000508685 PDE4AP27815 886 aa14.33□□□□□ -0.12
SH3RF1-203ENST00000508685 SLFN5Q08AF3 891 aa14.33□□□□□ -0.12
SH3RF1-203ENST00000508685 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.33□□□□□ -0.12
SH3RF1-203ENST00000508685 NKTRP30414 1462 aaKnown RBP14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 ITSN1Q15811 1721 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 TCP11L2Q8N4U5 519 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 BACH2Q9BYV9 841 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 TOPAZ1Q8N9V7 1692 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 XRN1Q8IZH2 1706 aaKnown RBP14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 AKAP12Q02952 1782 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 U2SURPO15042 1029 aaKnown RBP14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 PLIN1O60240 522 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 WWC1Q8IX03 1113 aa14.32□□□□□ -0.12
SH3RF1-203ENST00000508685 PPM1GO15355 546 aaPredicted RBP14.31□□□□□ -0.12
SH3RF1-203ENST00000508685 PAK3O75914 559 aaPredicted RBP14.31□□□□□ -0.12
SH3RF1-203ENST00000508685 KCNA6P17658 529 aa14.31□□□□□ -0.12
SH3RF1-203ENST00000508685 TRMT2AQ8IZ69 625 aaKnown RBP14.31□□□□□ -0.12
SH3RF1-203ENST00000508685 POLKQ9UBT6 870 aa14.31□□□□□ -0.12
SH3RF1-203ENST00000508685 PNPLA6Q8IY17 1366 aa14.3□□□□□ -0.12
SH3RF1-203ENST00000508685 RTL5Q5HYW3 569 aaPredicted RBP14.3□□□□□ -0.12
SH3RF1-203ENST00000508685 CERKQ8TCT0 537 aa14.3□□□□□ -0.12
SH3RF1-203ENST00000508685 ACEP12821 1306 aa14.3□□□□□ -0.12
SH3RF1-203ENST00000508685 ZNF335Q9H4Z2 1342 aaPredicted RBP14.3□□□□□ -0.12
SH3RF1-203ENST00000508685 DEKP35659 375 aaKnown RBP14.29□□□□□ -0.12
SH3RF1-203ENST00000508685 EMILIN1Q9Y6C2 1016 aa14.29□□□□□ -0.12
SH3RF1-203ENST00000508685 NRKQ7Z2Y5 1582 aa14.28□□□□□ -0.12
SH3RF1-203ENST00000508685 E9PSI1 815 aa14.28□□□□□ -0.12
SH3RF1-203ENST00000508685 DIAPH1O60610 1272 aaKnown RBP14.28□□□□□ -0.12
SH3RF1-203ENST00000508685 DDRGK1Q96HY6 314 aa14.28□□□□□ -0.12
SH3RF1-203ENST00000508685 ZNF692Q9BU19 519 aaPredicted RBP14.28□□□□□ -0.12
SH3RF1-203ENST00000508685 COG3Q96JB2 828 aa14.27□□□□□ -0.12
SH3RF1-203ENST00000508685 CRBNQ96SW2 442 aa14.27□□□□□ -0.12
SH3RF1-203ENST00000508685 PHF23Q9BUL5 403 aaPredicted RBP14.27□□□□□ -0.12
SH3RF1-203ENST00000508685 USP35Q9P2H5 1018 aa14.27□□□□□ -0.12
SH3RF1-203ENST00000508685 MAP2P11137 1827 aaKnown RBP14.27□□□□□ -0.13
SH3RF1-203ENST00000508685 PLEKHG3A1L390 1219 aa14.27□□□□□ -0.13
SH3RF1-203ENST00000508685 CENPQQ7L2Z9 268 aaPredicted RBP14.27□□□□□ -0.13
SH3RF1-203ENST00000508685 PLEKHF1Q96S99 279 aa14.27□□□□□ -0.13
SH3RF1-203ENST00000508685 LTBP4Q8N2S1 1624 aa14.26□□□□□ -0.13
SH3RF1-203ENST00000508685 PMFBP1Q8TBY8 1022 aa14.26□□□□□ -0.13
SH3RF1-203ENST00000508685 USP6P35125 1406 aa14.26□□□□□ -0.13
SH3RF1-203ENST00000508685 PIK3R4Q99570 1358 aa14.26□□□□□ -0.13
SH3RF1-203ENST00000508685 RRS1Q15050 365 aaKnown RBP14.25□□□□□ -0.13
SH3RF1-203ENST00000508685 RGPD8O14715 1765 aaPredicted RBP14.25□□□□□ -0.13
SH3RF1-203ENST00000508685 TTC21BQ7Z4L5 1316 aa14.25□□□□□ -0.13
SH3RF1-203ENST00000508685 RBM33Q96EV2 1170 aaKnown RBP14.25□□□□□ -0.13
SH3RF1-203ENST00000508685 C20orf194Q5TEA3 1177 aa14.24□□□□□ -0.13
SH3RF1-203ENST00000508685 AATKQ6ZMQ8 1374 aa14.24□□□□□ -0.13
SH3RF1-203ENST00000508685 LRRC7Q96NW7 1537 aa14.23□□□□□ -0.13
SH3RF1-203ENST00000508685 CCDC27Q2M243 656 aa14.23□□□□□ -0.13
SH3RF1-203ENST00000508685 CDK12Q9NYV4 1490 aaPredicted RBP14.23□□□□□ -0.13
SH3RF1-203ENST00000508685 KDM2BQ8NHM5 1336 aa14.23□□□□□ -0.13
SH3RF1-203ENST00000508685 MAPK8IP3Q9UPT6 1336 aa14.23□□□□□ -0.13
SH3RF1-203ENST00000508685 NBR1Q14596 966 aa14.22□□□□□ -0.13
SH3RF1-203ENST00000508685 CHD2O14647 1828 aaKnown RBP14.22□□□□□ -0.13
SH3RF1-203ENST00000508685 OVOS2A0A0J9YW53 1432 aa14.22□□□□□ -0.13
SH3RF1-203ENST00000508685 OVOS2Q6IE36 1432 aa14.22□□□□□ -0.13
SH3RF1-203ENST00000508685 SSH2Q76I76 1423 aa14.22□□□□□ -0.13
SH3RF1-203ENST00000508685 NALCNQ8IZF0 1738 aa14.21□□□□□ -0.13
SH3RF1-203ENST00000508685 BCAR3O75815 825 aa14.21□□□□□ -0.13
SH3RF1-203ENST00000508685 TMPOP42166 694 aaKnown RBP14.21□□□□□ -0.13
SH3RF1-203ENST00000508685 WDR63Q8IWG1 891 aa14.21□□□□□ -0.13
SH3RF1-203ENST00000508685 HMOX1P09601 288 aa14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 NGDNQ8NEJ9 315 aaKnown RBP14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 FBXO41Q8TF61 875 aa14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 IL13P35225 146 aa14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 RSPH6AQ9H0K4 717 aa14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 TRIM35Q9UPQ4 493 aa14.2□□□□□ -0.14
SH3RF1-203ENST00000508685 FMN2Q9NZ56 1722 aa14.19□□□□□ -0.14
SH3RF1-203ENST00000508685 SOX12O15370 315 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms