RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZNF511Q8NB15 262 aa8.97□□□□□ -0.97
NUP54-206ENST00000508465 SCARF1Q14162 830 aa8.96□□□□□ -0.98
NUP54-206ENST00000508465 DIXDC1Q155Q3 683 aa8.96□□□□□ -0.98
NUP54-206ENST00000508465 ZFP42Q96MM3 310 aa8.96□□□□□ -0.98
NUP54-206ENST00000508465 GMPRP36959 345 aa8.95□□□□□ -0.98
NUP54-206ENST00000508465 TLL2Q9Y6L7 1015 aa8.95□□□□□ -0.98
NUP54-206ENST00000508465 MYO15BQ96JP2 1530 aa8.95□□□□□ -0.98
NUP54-206ENST00000508465 CTHP32929 405 aa8.94□□□□□ -0.98
NUP54-206ENST00000508465 NNTQ13423 1086 aa8.94□□□□□ -0.98
NUP54-206ENST00000508465 ZSCAN1Q8NBB4 408 aa8.94□□□□□ -0.98
NUP54-206ENST00000508465 GJA5P36382 358 aa8.93□□□□□ -0.98
NUP54-206ENST00000508465 AMHR2Q16671 573 aa8.93□□□□□ -0.98
NUP54-206ENST00000508465 BARGINQ6ZT62 677 aa8.93□□□□□ -0.98
NUP54-206ENST00000508465 FAM174AQ8TBP5 190 aa8.93□□□□□ -0.98
NUP54-206ENST00000508465 BEGAINQ9BUH8 593 aa8.93□□□□□ -0.98
NUP54-206ENST00000508465 H3BM21 787 aa8.92□□□□□ -0.98
NUP54-206ENST00000508465 ADH1CP00326 375 aa8.92□□□□□ -0.98
NUP54-206ENST00000508465 VEGFBP49765 207 aa8.92□□□□□ -0.98
NUP54-206ENST00000508465 MRPL14Q6P1L8 145 aaKnown RBP8.92□□□□□ -0.98
NUP54-206ENST00000508465 WDR4P57081 412 aaKnown RBP8.91□□□□□ -0.98
NUP54-206ENST00000508465 LYPD8Q6UX82 237 aa8.91□□□□□ -0.98
NUP54-206ENST00000508465 GIGYF2Q6Y7W6 1299 aaKnown RBP8.91□□□□□ -0.98
NUP54-206ENST00000508465 ZMYND10O75800 440 aa8.9□□□□□ -0.98
NUP54-206ENST00000508465 DCAF1Q9Y4B6 1507 aa8.9□□□□□ -0.99
NUP54-206ENST00000508465 ARID5BQ14865 1188 aa8.89□□□□□ -0.99
NUP54-206ENST00000508465 PURBQ96QR8 312 aaKnown RBP8.89□□□□□ -0.99
NUP54-206ENST00000508465 TBC1D2Q9BYX2 928 aa8.89□□□□□ -0.99
NUP54-206ENST00000508465 UNC13AQ9UPW8 1703 aa8.88□□□□□ -0.99
NUP54-206ENST00000508465 TIMP2P16035 220 aa8.88□□□□□ -0.99
NUP54-206ENST00000508465 ZBTB3Q9H5J0 574 aa8.88□□□□□ -0.99
NUP54-206ENST00000508465 AGERQ15109 404 aa8.87□□□□□ -0.99
NUP54-206ENST00000508465 RSBN1LQ6PCB5 846 aaPredicted RBP8.87□□□□□ -0.99
NUP54-206ENST00000508465 CDK15Q96Q40 435 aa8.87□□□□□ -0.99
NUP54-206ENST00000508465 BICRAQ9NZM4 1560 aa8.86□□□□□ -0.99
NUP54-206ENST00000508465 NR5A1Q13285 461 aa8.86□□□□□ -0.99
NUP54-206ENST00000508465 ERBB4Q15303 1308 aa8.85□□□□□ -0.99
NUP54-206ENST00000508465 SCRIBQ14160 1630 aa8.85□□□□□ -0.99
NUP54-206ENST00000508465 SPTLC1O15269 473 aa8.85□□□□□ -0.99
NUP54-206ENST00000508465 HRCP23327 699 aa8.85□□□□□ -0.99
NUP54-206ENST00000508465 ZC3H15Q8WU90 426 aaKnown RBP8.85□□□□□ -0.99
NUP54-206ENST00000508465 PCDHB15Q9Y5E8 787 aa8.85□□□□□ -0.99
NUP54-206ENST00000508465 CFAP99D6REC4 459 aa8.84□□□□□ -0.99
NUP54-206ENST00000508465 UPP2O95045 317 aa8.84□□□□□ -0.99
NUP54-206ENST00000508465 ZIC2O95409 532 aaPredicted RBP8.84□□□□□ -0.99
NUP54-206ENST00000508465 PRPF38BQ5VTL8 546 aaKnown RBP8.84□□□□□ -0.99
NUP54-206ENST00000508465 BPHLQ86WA6 291 aaPredicted RBP8.84□□□□□ -0.99
NUP54-206ENST00000508465 FOXJ1Q92949 421 aa8.84□□□□□ -0.99
NUP54-206ENST00000508465 KLF16Q9BXK1 252 aaPredicted RBP8.84□□□□□ -0.99
NUP54-206ENST00000508465 MAN1A2O60476 641 aa8.83□□□□□ -1
NUP54-206ENST00000508465 LORP23490 312 aaPredicted RBP8.83□□□□□ -1
NUP54-206ENST00000508465 RIC3Q7Z5B4 369 aa8.83□□□□□ -1
NUP54-206ENST00000508465 F12P00748 615 aaPredicted RBP8.82□□□□□ -1
NUP54-206ENST00000508465 ARMC2Q8NEN0 867 aa8.82□□□□□ -1
NUP54-206ENST00000508465 MAP10Q9P2G4 905 aa8.82□□□□□ -1
NUP54-206ENST00000508465 SOBPA7XYQ1 873 aa8.81□□□□□ -1
NUP54-206ENST00000508465 C6orf118Q5T5N4 469 aa8.81□□□□□ -1
NUP54-206ENST00000508465 TSC1Q92574 1164 aa8.81□□□□□ -1
NUP54-206ENST00000508465 ITPKCQ96DU7 683 aa8.81□□□□□ -1
NUP54-206ENST00000508465 NUTM2BA6NNL0 878 aaPredicted RBP8.8□□□□□ -1
NUP54-206ENST00000508465 NUTM2EB1AL46 878 aaPredicted RBP8.8□□□□□ -1
NUP54-206ENST00000508465 BMP2P12643 396 aa8.8□□□□□ -1
NUP54-206ENST00000508465 CSPP1Q1MSJ5 1256 aa8.8□□□□□ -1
NUP54-206ENST00000508465 NUTM2DQ5VT03 806 aaPredicted RBP8.8□□□□□ -1
NUP54-206ENST00000508465 NUTM2AQ8IVF1 878 aaPredicted RBP8.8□□□□□ -1
NUP54-206ENST00000508465 PARP9Q8IXQ6 854 aa8.8□□□□□ -1
NUP54-206ENST00000508465 ZFAND3Q9H8U3 227 aa8.8□□□□□ -1
NUP54-206ENST00000508465 VSIG8P0DPA2 414 aa8.79□□□□□ -1
NUP54-206ENST00000508465 GRM5P41594 1212 aa8.79□□□□□ -1
NUP54-206ENST00000508465 TRIM66O15016 1216 aa8.78□□□□□ -1
NUP54-206ENST00000508465 CABLES1Q8TDN4 633 aa8.78□□□□□ -1
NUP54-206ENST00000508465 AK7Q96M32 723 aa8.78□□□□□ -1
NUP54-206ENST00000508465 NR3C2P08235 984 aa8.77□□□□□ -1.01
NUP54-206ENST00000508465 PER1O15534 1290 aaPredicted RBP8.76□□□□□ -1.01
NUP54-206ENST00000508465 C4orf48Q5BLP8 95 aa8.76□□□□□ -1.01
NUP54-206ENST00000508465 NBPF14Q5TI25 921 aa8.76□□□□□ -1.01
NUP54-206ENST00000508465 LINC00528Q8N1L1 170 aa8.76□□□□□ -1.01
NUP54-206ENST00000508465 PPFIA3O75145 1194 aa8.75□□□□□ -1.01
NUP54-206ENST00000508465 VASH1Q7L8A9 365 aaPredicted RBP8.75□□□□□ -1.01
NUP54-206ENST00000508465 TSEN34Q9BSV6 310 aaKnown RBP8.75□□□□□ -1.01
NUP54-206ENST00000508465 TUSC1Q2TAM9 212 aa8.74□□□□□ -1.01
NUP54-206ENST00000508465 MEIOBQ8N635 442 aa8.74□□□□□ -1.01
NUP54-206ENST00000508465 HELBQ8NG08 1087 aaPredicted RBP8.74□□□□□ -1.01
NUP54-206ENST00000508465 MAP4K5Q9Y4K4 846 aa8.74□□□□□ -1.01
NUP54-206ENST00000508465 EMILIN1Q9Y6C2 1016 aa8.74□□□□□ -1.01
NUP54-206ENST00000508465 FSHRP23945 695 aa8.72□□□□□ -1.01
NUP54-206ENST00000508465 MYSM1Q5VVJ2 828 aa8.72□□□□□ -1.01
NUP54-206ENST00000508465 SH3RF1Q7Z6J0 888 aa8.72□□□□□ -1.01
NUP54-206ENST00000508465 C1QTNF2Q9BXJ5 285 aa8.72□□□□□ -1.01
NUP54-206ENST00000508465 SOS2Q07890 1332 aaPredicted RBP8.72□□□□□ -1.01
NUP54-206ENST00000508465 MAGEB6P1A0A0J9YX57 407 aa8.71□□□□□ -1.02
NUP54-206ENST00000508465 LILRB3O75022 631 aa8.71□□□□□ -1.02
NUP54-206ENST00000508465 QPCTQ16769 361 aa8.71□□□□□ -1.02
NUP54-206ENST00000508465 TRMT44Q8IYL2 757 aaKnown RBP8.71□□□□□ -1.02
NUP54-206ENST00000508465 GPKOWQ92917 476 aaPredicted RBP eCLIP8.71□□□□□ -1.021e-10■■■□□ 14.7
NUP54-206ENST00000508465 LIMD1Q9UGP4 676 aa8.71□□□□□ -1.02
NUP54-206ENST00000508465 SHROOM4Q9ULL8 1493 aa8.7□□□□□ -1.02
NUP54-206ENST00000508465 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.7□□□□□ -1.02
NUP54-206ENST00000508465 CCDC116Q8IYX3 515 aa8.7□□□□□ -1.02
NUP54-206ENST00000508465 SH3BP5LQ7L8J4 393 aa8.69□□□□□ -1.02
NUP54-206ENST00000508465 DNMT3LQ9UJW3 386 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms