RNA–Protein interactions for RNA: ENST00000508290.5

SFXN1-209, Transcript of sideroflexin 1, humanhuman

TSL 4

Gene SFXN1, Length 592 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-209ENST00000508290 ATAD2Q6PL18 1390 aa28.15■■■□□ 2.1
SFXN1-209ENST00000508290 PAK3O75914 559 aaPredicted RBP28.14■■■□□ 2.1
SFXN1-209ENST00000508290 QTRT2Q9H974 415 aaKnown RBP28.14■■■□□ 2.1
SFXN1-209ENST00000508290 TRPC5Q9UL62 973 aaPredicted RBP28.14■■■□□ 2.1
SFXN1-209ENST00000508290 RBM6P78332 1123 aaKnown RBP28.13■■■□□ 2.09
SFXN1-209ENST00000508290 ABCA3Q99758 1704 aa28.09■■■□□ 2.09
SFXN1-209ENST00000508290 CCER1Q8TC90 406 aaPredicted RBP28.09■■■□□ 2.09
SFXN1-209ENST00000508290 CABP1Q9NZU7 370 aa28.09■■■□□ 2.09
SFXN1-209ENST00000508290 SLIT2O94813 1529 aa28.08■■■□□ 2.09
SFXN1-209ENST00000508290 CABLES1Q8TDN4 633 aa28.08■■■□□ 2.09
SFXN1-209ENST00000508290 PUS7Q96PZ0 661 aaKnown RBP28.08■■■□□ 2.09
SFXN1-209ENST00000508290 ATRNO75882 1429 aa28.08■■■□□ 2.09
SFXN1-209ENST00000508290 BCL9LQ86UU0 1499 aa28.08■■■□□ 2.09
SFXN1-209ENST00000508290 ZNF692Q9BU19 519 aaPredicted RBP28.07■■■□□ 2.08
SFXN1-209ENST00000508290 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.06■■■□□ 2.08
SFXN1-209ENST00000508290 USP6P35125 1406 aa28.05■■■□□ 2.08
SFXN1-209ENST00000508290 UNC5CLQ8IV45 518 aa28.05■■■□□ 2.08
SFXN1-209ENST00000508290 ABTB2Q8N961 1025 aa28.02■■■□□ 2.08
SFXN1-209ENST00000508290 NWD2Q9ULI1 1742 aa28.01■■■□□ 2.07
SFXN1-209ENST00000508290 NLRP13Q86W25 1043 aa28■■■□□ 2.07
SFXN1-209ENST00000508290 CRYBG1Q9Y4K1 1723 aa28■■■□□ 2.07
SFXN1-209ENST00000508290 USP47Q96K76 1375 aa27.99■■■□□ 2.07
SFXN1-209ENST00000508290 ST20-MTHFSA0A0A6YYL1 179 aa27.98■■■□□ 2.07
SFXN1-209ENST00000508290 PLEKHG5O94827 1062 aa27.98■■■□□ 2.07
SFXN1-209ENST00000508290 GJD4Q96KN9 370 aaPredicted RBP27.98■■■□□ 2.07
SFXN1-209ENST00000508290 SSH2Q76I76 1423 aa27.98■■■□□ 2.07
SFXN1-209ENST00000508290 NINLQ9Y2I6 1382 aa27.98■■■□□ 2.07
SFXN1-209ENST00000508290 USP19O94966 1318 aa27.97■■■□□ 2.07
SFXN1-209ENST00000508290 COL14A1Q05707 1796 aaKnown RBP27.97■■■□□ 2.07
SFXN1-209ENST00000508290 TESK2Q96S53 571 aa27.97■■■□□ 2.07
SFXN1-209ENST00000508290 RGS12O14924 1447 aa27.97■■■□□ 2.07
SFXN1-209ENST00000508290 CPSF1Q10570 1443 aaKnown RBP27.97■■■□□ 2.07
SFXN1-209ENST00000508290 FAM83GA6ND36 823 aa27.96■■■□□ 2.07
SFXN1-209ENST00000508290 PLCH1Q4KWH8 1693 aa27.96■■■□□ 2.07
SFXN1-209ENST00000508290 TTC21AQ8NDW8 1320 aa27.95■■■□□ 2.07
SFXN1-209ENST00000508290 VPS72Q15906 364 aa27.95■■■□□ 2.06
SFXN1-209ENST00000508290 PRDM11Q9NQV5 511 aa27.95■■■□□ 2.06
SFXN1-209ENST00000508290 PHRF1Q9P1Y6 1649 aaKnown RBP27.95■■■□□ 2.06
SFXN1-209ENST00000508290 CPDO75976 1380 aa27.92■■■□□ 2.06
SFXN1-209ENST00000508290 KTN1Q86UP2 1357 aaKnown RBP27.92■■■□□ 2.06
SFXN1-209ENST00000508290 KIAA0232Q92628 1395 aa27.91■■■□□ 2.06
SFXN1-209ENST00000508290 NUTM2GQ5VZR2 741 aa27.91■■■□□ 2.06
SFXN1-209ENST00000508290 HDGFL2Q7Z4V5 671 aaPredicted RBP27.91■■■□□ 2.06
SFXN1-209ENST00000508290 TERF2IPQ9NYB0 399 aa27.91■■■□□ 2.06
SFXN1-209ENST00000508290 AKAP12Q02952 1782 aa27.91■■■□□ 2.06
SFXN1-209ENST00000508290 TMF1P82094 1093 aa27.9■■■□□ 2.06
SFXN1-209ENST00000508290 CDCA8Q53HL2 280 aa27.9■■■□□ 2.06
SFXN1-209ENST00000508290 BTG4Q9NY30 223 aa27.9■■■□□ 2.06
SFXN1-209ENST00000508290 NRKQ7Z2Y5 1582 aa27.9■■■□□ 2.06
SFXN1-209ENST00000508290 TTC21BQ7Z4L5 1316 aa27.9■■■□□ 2.06
SFXN1-209ENST00000508290 NLRP6P59044 892 aa27.89■■■□□ 2.06
SFXN1-209ENST00000508290 GCP02774 474 aa27.88■■■□□ 2.05
SFXN1-209ENST00000508290 TMC1Q8TDI8 760 aa27.88■■■□□ 2.05
SFXN1-209ENST00000508290 NRAPQ86VF7 1730 aa27.86■■■□□ 2.05
SFXN1-209ENST00000508290 SLIT3O75094 1523 aa27.86■■■□□ 2.05
SFXN1-209ENST00000508290 MON2Q7Z3U7 1717 aa27.85■■■□□ 2.05
SFXN1-209ENST00000508290 CCDC9Q9Y3X0 531 aaKnown RBP27.85■■■□□ 2.05
SFXN1-209ENST00000508290 GLI3P10071 1580 aa27.85■■■□□ 2.05
SFXN1-209ENST00000508290 CD163L1Q9NR16 1453 aa27.84■■■□□ 2.05
SFXN1-209ENST00000508290 ZC3H6P61129 1189 aaKnown RBP27.84■■■□□ 2.05
SFXN1-209ENST00000508290 KCNH5Q8NCM2 988 aa27.84■■■□□ 2.05
SFXN1-209ENST00000508290 PIK3C2AO00443 1686 aa27.84■■■□□ 2.05
SFXN1-209ENST00000508290 EDC4Q6P2E9 1401 aaKnown RBP27.84■■■□□ 2.05
SFXN1-209ENST00000508290 ONECUT3O60422 494 aaPredicted RBP27.82■■■□□ 2.04
SFXN1-209ENST00000508290 SLC12A5Q9H2X9 1139 aa27.82■■■□□ 2.04
SFXN1-209ENST00000508290 A0A1W2PP64 1363 aa27.79■■■□□ 2.04
SFXN1-209ENST00000508290 USP31Q70CQ4 1352 aa27.79■■■□□ 2.04
SFXN1-209ENST00000508290 CHRNA2Q15822 529 aa27.78■■■□□ 2.04
SFXN1-209ENST00000508290 UPF1Q92900 1129 aaKnown RBP eCLIP27.78■■■□□ 2.04
SFXN1-209ENST00000508290 AATKQ6ZMQ8 1374 aa27.77■■■□□ 2.04
SFXN1-209ENST00000508290 SPATA31A5Q5VU36 1347 aa27.77■■■□□ 2.04
SFXN1-209ENST00000508290 SPATA31A7Q8IWB4 1347 aa27.77■■■□□ 2.04
SFXN1-209ENST00000508290 ANKRD36BQ8N2N9 1353 aa27.75■■■□□ 2.03
SFXN1-209ENST00000508290 LMO7Q8WWI1 1683 aa27.75■■■□□ 2.03
SFXN1-209ENST00000508290 EVA1CP58658 441 aa27.75■■■□□ 2.03
SFXN1-209ENST00000508290 EIF4G2P78344 907 aaKnown RBP eCLIP27.74■■■□□ 2.03
SFXN1-209ENST00000508290 SEPT12Q8IYM1 358 aa27.74■■■□□ 2.03
SFXN1-209ENST00000508290 USP54Q70EL1 1684 aa27.74■■■□□ 2.03
SFXN1-209ENST00000508290 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.73■■■□□ 2.03
SFXN1-209ENST00000508290 ABCC6O95255 1503 aa27.72■■■□□ 2.03
SFXN1-209ENST00000508290 CAMTA1Q9Y6Y1 1673 aa27.72■■■□□ 2.03
SFXN1-209ENST00000508290 SPATA31A1Q5TZJ5 1347 aa27.71■■■□□ 2.03
SFXN1-209ENST00000508290 STRN4Q9NRL3 753 aa27.71■■■□□ 2.03
SFXN1-209ENST00000508290 ARHGEF25Q86VW2 580 aa27.7■■■□□ 2.02
SFXN1-209ENST00000508290 CCDC125Q86Z20 511 aa27.69■■■□□ 2.02
SFXN1-209ENST00000508290 COL5A2P05997 1499 aaPredicted RBP27.69■■■□□ 2.02
SFXN1-209ENST00000508290 NFAT5O94916 1531 aa27.68■■■□□ 2.02
SFXN1-209ENST00000508290 FAM98CQ17RN3 349 aaKnown RBP27.68■■■□□ 2.02
SFXN1-209ENST00000508290 NME9Q86XW9 330 aa27.68■■■□□ 2.02
SFXN1-209ENST00000508290 THRAP3Q9Y2W1 955 aaKnown RBP27.68■■■□□ 2.02
SFXN1-209ENST00000508290 A0A0G2JS52 829 aa27.66■■■□□ 2.02
SFXN1-209ENST00000508290 MYT1Q01538 1121 aa27.66■■■□□ 2.02
SFXN1-209ENST00000508290 BARGINQ6ZT62 677 aa27.66■■■□□ 2.02
SFXN1-209ENST00000508290 OVOS2A0A0J9YW53 1432 aa27.66■■■□□ 2.02
SFXN1-209ENST00000508290 OVOS2Q6IE36 1432 aa27.66■■■□□ 2.02
SFXN1-209ENST00000508290 KRT27Q7Z3Y8 459 aa27.65■■■□□ 2.02
SFXN1-209ENST00000508290 CRB1P82279 1406 aa27.64■■■□□ 2.02
SFXN1-209ENST00000508290 THSD7AQ9UPZ6 1657 aa27.63■■■□□ 2.01
SFXN1-209ENST00000508290 ZBTB7CA1YPR0 619 aa27.63■■■□□ 2.01
SFXN1-209ENST00000508290 LARP1Q6PKG0 1096 aaKnown RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms