RNA–Protein interactions for RNA: ENST00000506267.1

HMGB2-204, Transcript of high mobility group box 2, human

TSL 3

Gene HMGB2, Length 629 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGB2-204	ENST00000506267	TIMELESS	Q9UNS1	1208 aa		32	■■■□□ 2.71
HMGB2-204	ENST00000506267	PAK3	O75914	559 aa	Predicted RBP	31.99	■■■□□ 2.71
HMGB2-204	ENST00000506267	CABP1	Q9NZU7	370 aa		31.99	■■■□□ 2.71
HMGB2-204	ENST00000506267	PLEKHG5	O94827	1062 aa		31.98	■■■□□ 2.71
HMGB2-204	ENST00000506267	SLIT2	O94813	1529 aa		31.98	■■■□□ 2.71
HMGB2-204	ENST00000506267	ATRN	O75882	1429 aa		31.97	■■■□□ 2.71
HMGB2-204	ENST00000506267	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.97	■■■□□ 2.71
HMGB2-204	ENST00000506267	RBM6	P78332	1123 aa	Known RBP	31.95	■■■□□ 2.71
HMGB2-204	ENST00000506267	HAP1	P54257	671 aa	Predicted RBP	31.94	■■■□□ 2.7
HMGB2-204	ENST00000506267	TRPC5	Q9UL62	973 aa	Predicted RBP	31.94	■■■□□ 2.7
HMGB2-204	ENST00000506267	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	31.93	■■■□□ 2.7
HMGB2-204	ENST00000506267	FAM83G	A6ND36	823 aa		31.9	■■■□□ 2.7
HMGB2-204	ENST00000506267	TESK2	Q96S53	571 aa		31.9	■■■□□ 2.7
HMGB2-204	ENST00000506267	ATAD2	Q6PL18	1390 aa		31.9	■■■□□ 2.7
HMGB2-204	ENST00000506267	USP6	P35125	1406 aa		31.9	■■■□□ 2.7
HMGB2-204	ENST00000506267	PLCH1	Q4KWH8	1693 aa		31.89	■■■□□ 2.7
HMGB2-204	ENST00000506267	UNC5CL	Q8IV45	518 aa		31.89	■■■□□ 2.7
HMGB2-204	ENST00000506267	BRD4	O60885	1362 aa	Predicted RBP	31.89	■■■□□ 2.7
HMGB2-204	ENST00000506267	SSH2	Q76I76	1423 aa		31.89	■■■□□ 2.7
HMGB2-204	ENST00000506267	CCER1	Q8TC90	406 aa	Predicted RBP	31.88	■■■□□ 2.69
HMGB2-204	ENST00000506267	NWD2	Q9ULI1	1742 aa		31.88	■■■□□ 2.69
HMGB2-204	ENST00000506267	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.87	■■■□□ 2.69
HMGB2-204	ENST00000506267	RGS12	O14924	1447 aa		31.87	■■■□□ 2.69
HMGB2-204	ENST00000506267	ST20-MTHFS	A0A0A6YYL1	179 aa		31.87	■■■□□ 2.69
HMGB2-204	ENST00000506267	NUTM2G	Q5VZR2	741 aa		31.87	■■■□□ 2.69
HMGB2-204	ENST00000506267	AKAP12	Q02952	1782 aa		31.86	■■■□□ 2.69
HMGB2-204	ENST00000506267	ABTB2	Q8N961	1025 aa		31.85	■■■□□ 2.69
HMGB2-204	ENST00000506267	CPSF1	Q10570	1443 aa	Known RBP	31.83	■■■□□ 2.69
HMGB2-204	ENST00000506267	USP19	O94966	1318 aa		31.82	■■■□□ 2.68
HMGB2-204	ENST00000506267	COL14A1	Q05707	1796 aa	Known RBP	31.82	■■■□□ 2.68
HMGB2-204	ENST00000506267	GJD4	Q96KN9	370 aa	Predicted RBP	31.82	■■■□□ 2.68
HMGB2-204	ENST00000506267	PUS7	Q96PZ0	661 aa	Known RBP	31.81	■■■□□ 2.68
HMGB2-204	ENST00000506267	USP47	Q96K76	1375 aa		31.81	■■■□□ 2.68
HMGB2-204	ENST00000506267	ZNF692	Q9BU19	519 aa	Predicted RBP	31.8	■■■□□ 2.68
HMGB2-204	ENST00000506267	NRAP	Q86VF7	1730 aa		31.8	■■■□□ 2.68
HMGB2-204	ENST00000506267	GLI3	P10071	1580 aa		31.79	■■■□□ 2.68
HMGB2-204	ENST00000506267	CD163L1	Q9NR16	1453 aa		31.78	■■■□□ 2.68
HMGB2-204	ENST00000506267	NRK	Q7Z2Y5	1582 aa		31.78	■■■□□ 2.68
HMGB2-204	ENST00000506267	VPS72	Q15906	364 aa		31.77	■■■□□ 2.68
HMGB2-204	ENST00000506267	KIAA0232	Q92628	1395 aa		31.77	■■■□□ 2.68
HMGB2-204	ENST00000506267	PIK3C2A	O00443	1686 aa		31.76	■■■□□ 2.68
HMGB2-204	ENST00000506267	NLRP13	Q86W25	1043 aa		31.76	■■■□□ 2.67
HMGB2-204	ENST00000506267	TTC21B	Q7Z4L5	1316 aa		31.75	■■■□□ 2.67
HMGB2-204	ENST00000506267	MON2	Q7Z3U7	1717 aa		31.75	■■■□□ 2.67
HMGB2-204	ENST00000506267	BTG4	Q9NY30	223 aa		31.75	■■■□□ 2.67
HMGB2-204	ENST00000506267	PRDM11	Q9NQV5	511 aa		31.74	■■■□□ 2.67
HMGB2-204	ENST00000506267	ZC3H6	P61129	1189 aa	Known RBP	31.73	■■■□□ 2.67
HMGB2-204	ENST00000506267	SLC12A5	Q9H2X9	1139 aa		31.73	■■■□□ 2.67
HMGB2-204	ENST00000506267	KTN1	Q86UP2	1357 aa	Known RBP	31.72	■■■□□ 2.67
HMGB2-204	ENST00000506267	SLC24A1	O60721	1099 aa		31.72	■■■□□ 2.67
HMGB2-204	ENST00000506267	GC	P02774	474 aa		31.71	■■■□□ 2.67
HMGB2-204	ENST00000506267	NLRP6	P59044	892 aa		31.71	■■■□□ 2.67
HMGB2-204	ENST00000506267	SLIT3	O75094	1523 aa		31.7	■■■□□ 2.67
HMGB2-204	ENST00000506267	CPD	O75976	1380 aa		31.7	■■■□□ 2.67
HMGB2-204	ENST00000506267	CHRNA2	Q15822	529 aa		31.7	■■■□□ 2.67
HMGB2-204	ENST00000506267	TMC1	Q8TDI8	760 aa		31.7	■■■□□ 2.67
HMGB2-204	ENST00000506267	TTC21A	Q8NDW8	1320 aa		31.69	■■■□□ 2.66
HMGB2-204	ENST00000506267	UPF1	Q92900	1129 aa	Known RBP eCLIP	31.67	■■■□□ 2.66
HMGB2-204	ENST00000506267	LMO7	Q8WWI1	1683 aa		31.65	■■■□□ 2.66
HMGB2-204	ENST00000506267	ONECUT3	O60422	494 aa	Predicted RBP	31.65	■■■□□ 2.66
HMGB2-204	ENST00000506267		A0A1W2PP64	1363 aa		31.64	■■■□□ 2.66
HMGB2-204	ENST00000506267	TMF1	P82094	1093 aa		31.63	■■■□□ 2.65
HMGB2-204	ENST00000506267	NINL	Q9Y2I6	1382 aa		31.63	■■■□□ 2.65
HMGB2-204	ENST00000506267	CAMTA1	Q9Y6Y1	1673 aa		31.63	■■■□□ 2.65
HMGB2-204	ENST00000506267	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.62	■■■□□ 2.65
HMGB2-204	ENST00000506267	CCDC9	Q9Y3X0	531 aa	Known RBP	31.62	■■■□□ 2.65
HMGB2-204	ENST00000506267	SPATA31A5	Q5VU36	1347 aa		31.61	■■■□□ 2.65
HMGB2-204	ENST00000506267	SPATA31A7	Q8IWB4	1347 aa		31.61	■■■□□ 2.65
HMGB2-204	ENST00000506267	TERF2IP	Q9NYB0	399 aa		31.61	■■■□□ 2.65
HMGB2-204	ENST00000506267	USP54	Q70EL1	1684 aa		31.6	■■■□□ 2.65
HMGB2-204	ENST00000506267	EDC4	Q6P2E9	1401 aa	Known RBP	31.59	■■■□□ 2.65
HMGB2-204	ENST00000506267	USP31	Q70CQ4	1352 aa		31.59	■■■□□ 2.65
HMGB2-204	ENST00000506267	BRWD3	Q6RI45	1802 aa		31.59	■■■□□ 2.65
HMGB2-204	ENST00000506267	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.59	■■■□□ 2.65
HMGB2-204	ENST00000506267	ZRANB1	Q9UGI0	708 aa		31.59	■■■□□ 2.65
HMGB2-204	ENST00000506267	SEPT12	Q8IYM1	358 aa		31.57	■■■□□ 2.64
HMGB2-204	ENST00000506267	EP400	Q96L91	3159 aa		31.57	■■■□□ 2.64
HMGB2-204	ENST00000506267	COL18A1	P39060	1754 aa		31.56	■■■□□ 2.64
HMGB2-204	ENST00000506267	NME9	Q86XW9	330 aa		31.56	■■■□□ 2.64
HMGB2-204	ENST00000506267	AATK	Q6ZMQ8	1374 aa		31.55	■■■□□ 2.64
HMGB2-204	ENST00000506267	NFAT5	O94916	1531 aa		31.54	■■■□□ 2.64
HMGB2-204	ENST00000506267	STRN4	Q9NRL3	753 aa		31.54	■■■□□ 2.64
HMGB2-204	ENST00000506267	SPATA31A1	Q5TZJ5	1347 aa		31.53	■■■□□ 2.64
HMGB2-204	ENST00000506267	FAM98C	Q17RN3	349 aa	Known RBP	31.53	■■■□□ 2.64
HMGB2-204	ENST00000506267	ARHGEF25	Q86VW2	580 aa		31.53	■■■□□ 2.64
HMGB2-204	ENST00000506267	KCNH5	Q8NCM2	988 aa		31.53	■■■□□ 2.64
HMGB2-204	ENST00000506267	ANKRD36B	Q8N2N9	1353 aa		31.52	■■■□□ 2.64
HMGB2-204	ENST00000506267	CDCA8	Q53HL2	280 aa		31.51	■■■□□ 2.63
HMGB2-204	ENST00000506267	COL5A2	P05997	1499 aa	Predicted RBP	31.51	■■■□□ 2.63
HMGB2-204	ENST00000506267	LARP1	Q6PKG0	1096 aa	Known RBP	31.5	■■■□□ 2.63
HMGB2-204	ENST00000506267	THSD7A	Q9UPZ6	1657 aa		31.49	■■■□□ 2.63
HMGB2-204	ENST00000506267	EVA1C	P58658	441 aa		31.49	■■■□□ 2.63
HMGB2-204	ENST00000506267	AXIN2	Q9Y2T1	843 aa		31.48	■■■□□ 2.63
HMGB2-204	ENST00000506267	OVOS2	A0A0J9YW53	1432 aa		31.48	■■■□□ 2.63
HMGB2-204	ENST00000506267	OVOS2	Q6IE36	1432 aa		31.48	■■■□□ 2.63
HMGB2-204	ENST00000506267	ZBTB7C	A1YPR0	619 aa		31.47	■■■□□ 2.63
HMGB2-204	ENST00000506267	SOX12	O15370	315 aa		31.47	■■■□□ 2.63
HMGB2-204	ENST00000506267	MYOM1	P52179	1685 aa		31.47	■■■□□ 2.63
HMGB2-204	ENST00000506267	HSPA5	P11021	654 aa	Known RBP	31.46	■■■□□ 2.63
HMGB2-204	ENST00000506267	EIF4G2	P78344	907 aa	Known RBP eCLIP	31.46	■■■□□ 2.63

Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms