RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZNF692Q9BU19 519 aaPredicted RBP16.44■□□□□ 0.22
CUX1-210ENST00000497815 COL16A1Q07092 1604 aaPredicted RBP16.44■□□□□ 0.22
CUX1-210ENST00000497815 PLEKHG5O94827 1062 aa16.43■□□□□ 0.22
CUX1-210ENST00000497815 PANK3Q9H999 370 aa16.43■□□□□ 0.22
CUX1-210ENST00000497815 AKAP12Q02952 1782 aa16.43■□□□□ 0.22
CUX1-210ENST00000497815 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.42■□□□□ 0.223e-6■□□□□ 10.3
CUX1-210ENST00000497815 LRRC59Q96AG4 307 aaKnown RBP16.42■□□□□ 0.22
CUX1-210ENST00000497815 TRPM3Q9HCF6 1732 aaPredicted RBP16.41■□□□□ 0.22
CUX1-210ENST00000497815 SPATA31A3Q5VYP0 1347 aa16.41■□□□□ 0.22
CUX1-210ENST00000497815 SBNO1A3KN83 1393 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 MON2Q7Z3U7 1717 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 TNS3Q68CZ2 1445 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 NUTM2GQ5VZR2 741 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 CARD14Q9BXL6 1004 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 TTC21BQ7Z4L5 1316 aa16.4■□□□□ 0.22
CUX1-210ENST00000497815 EDC4Q6P2E9 1401 aaKnown RBP16.39■□□□□ 0.21
CUX1-210ENST00000497815 NSD3Q9BZ95 1437 aa16.39■□□□□ 0.21
CUX1-210ENST00000497815 NRKQ7Z2Y5 1582 aa16.38■□□□□ 0.21
CUX1-210ENST00000497815 SSH2Q76I76 1423 aa16.38■□□□□ 0.21
CUX1-210ENST00000497815 ABTB2Q8N961 1025 aa16.38■□□□□ 0.21
CUX1-210ENST00000497815 DDX10Q13206 875 aaKnown RBP16.37■□□□□ 0.21
CUX1-210ENST00000497815 NME9Q86XW9 330 aa16.37■□□□□ 0.21
CUX1-210ENST00000497815 BRD4O60885 1362 aaPredicted RBP16.37■□□□□ 0.21
CUX1-210ENST00000497815 PNPLA6Q8IY17 1366 aa16.37■□□□□ 0.21
CUX1-210ENST00000497815 TTC21AQ8NDW8 1320 aa16.36■□□□□ 0.21
CUX1-210ENST00000497815 ARHGEF10O15013 1369 aa16.36■□□□□ 0.21
CUX1-210ENST00000497815 JCADQ9P266 1359 aa16.36■□□□□ 0.21
CUX1-210ENST00000497815 ALS2Q96Q42 1657 aa16.35■□□□□ 0.21
CUX1-210ENST00000497815 NLRP6P59044 892 aa16.35■□□□□ 0.21
CUX1-210ENST00000497815 ZRANB1Q9UGI0 708 aa16.35■□□□□ 0.21
CUX1-210ENST00000497815 CNGB1Q14028 1251 aaPredicted RBP16.34■□□□□ 0.21
CUX1-210ENST00000497815 CABLES1Q8TDN4 633 aa16.34■□□□□ 0.21
CUX1-210ENST00000497815 KNSTRNQ9Y448 316 aa16.34■□□□□ 0.21
CUX1-210ENST00000497815 PIK3C2AO00443 1686 aa16.34■□□□□ 0.21
CUX1-210ENST00000497815 NUTM2BA6NNL0 878 aaPredicted RBP16.33■□□□□ 0.2
CUX1-210ENST00000497815 NUTM2EB1AL46 878 aaPredicted RBP16.33■□□□□ 0.2
CUX1-210ENST00000497815 NUTM2AQ8IVF1 878 aaPredicted RBP16.33■□□□□ 0.2
CUX1-210ENST00000497815 GGNBP2Q9H3C7 697 aa16.33■□□□□ 0.2
CUX1-210ENST00000497815 HAP1P54257 671 aaPredicted RBP16.32■□□□□ 0.2
CUX1-210ENST00000497815 CGNL1Q0VF96 1302 aa16.32■□□□□ 0.2
CUX1-210ENST00000497815 SHPRHQ149N8 1683 aa16.32■□□□□ 0.2
CUX1-210ENST00000497815 NLRP13Q86W25 1043 aa16.32■□□□□ 0.2
CUX1-210ENST00000497815 FYB1O15117 783 aa16.31■□□□□ 0.2
CUX1-210ENST00000497815 SOX12O15370 315 aa16.31■□□□□ 0.2
CUX1-210ENST00000497815 PER1O15534 1290 aaPredicted RBP16.3■□□□□ 0.2
CUX1-210ENST00000497815 COL22A1Q8NFW1 1626 aaPredicted RBP16.3■□□□□ 0.2
CUX1-210ENST00000497815 MED1Q15648 1581 aaPredicted RBP16.3■□□□□ 0.2
CUX1-210ENST00000497815 COG3Q96JB2 828 aa16.29■□□□□ 0.2
CUX1-210ENST00000497815 KIF20BQ96Q89 1820 aa16.29■□□□□ 0.2
CUX1-210ENST00000497815 SPATA31A6Q5VVP1 1343 aa16.28■□□□□ 0.2
CUX1-210ENST00000497815 ADAMTS2O95450 1211 aa16.28■□□□□ 0.2
CUX1-210ENST00000497815 CC2D1BQ5T0F9 858 aaKnown RBP16.28■□□□□ 0.2
CUX1-210ENST00000497815 USP31Q70CQ4 1352 aa16.27■□□□□ 0.2
CUX1-210ENST00000497815 USP19O94966 1318 aa16.27■□□□□ 0.2
CUX1-210ENST00000497815 OVOS2A0A0J9YW53 1432 aa16.27■□□□□ 0.19
CUX1-210ENST00000497815 OVOS2Q6IE36 1432 aa16.27■□□□□ 0.19
CUX1-210ENST00000497815 ZBTB7CA1YPR0 619 aa16.26■□□□□ 0.19
CUX1-210ENST00000497815 AMER1Q5JTC6 1135 aaPredicted RBP16.26■□□□□ 0.19
CUX1-210ENST00000497815 PHRF1Q9P1Y6 1649 aaKnown RBP16.26■□□□□ 0.19
CUX1-210ENST00000497815 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
CUX1-210ENST00000497815 MARF1Q9Y4F3 1742 aaKnown RBP16.25■□□□□ 0.19
CUX1-210ENST00000497815 CRYBG1Q9Y4K1 1723 aa16.25■□□□□ 0.19
CUX1-210ENST00000497815 GCP02774 474 aa16.25■□□□□ 0.19
CUX1-210ENST00000497815 TNNT2P45379 298 aaPredicted RBP16.25■□□□□ 0.19
CUX1-210ENST00000497815 ZC3H6P61129 1189 aaKnown RBP16.25■□□□□ 0.19
CUX1-210ENST00000497815 LRP6O75581 1613 aa16.25■□□□□ 0.19
CUX1-210ENST00000497815 SLIT3O75094 1523 aa16.24■□□□□ 0.19
CUX1-210ENST00000497815 MEX3CQ5U5Q3 659 aaKnown RBP16.24■□□□□ 0.19
CUX1-210ENST00000497815 MORC1Q86VD1 984 aa16.24■□□□□ 0.19
CUX1-210ENST00000497815 NSD2O96028 1365 aa16.24■□□□□ 0.19
CUX1-210ENST00000497815 FBLN1P23142 703 aa16.23■□□□□ 0.19
CUX1-210ENST00000497815 KCNH5Q8NCM2 988 aa16.23■□□□□ 0.19
CUX1-210ENST00000497815 USP54Q70EL1 1684 aa16.23■□□□□ 0.19
CUX1-210ENST00000497815 C8orf37Q96NL8 207 aa16.21■□□□□ 0.19
CUX1-210ENST00000497815 KIAA0232Q92628 1395 aa16.21■□□□□ 0.19
CUX1-210ENST00000497815 NFAT5O94916 1531 aa16.2■□□□□ 0.18
CUX1-210ENST00000497815 ANKRD26Q9UPS8 1709 aa16.2■□□□□ 0.18
CUX1-210ENST00000497815 CHRNA2Q15822 529 aa16.2■□□□□ 0.18
CUX1-210ENST00000497815 PRDM11Q9NQV5 511 aa16.2■□□□□ 0.18
CUX1-210ENST00000497815 NPC1L1Q9UHC9 1359 aa16.19■□□□□ 0.18
CUX1-210ENST00000497815 RRS1Q15050 365 aaKnown RBP16.19■□□□□ 0.18
CUX1-210ENST00000497815 FAM83GA6ND36 823 aa16.18■□□□□ 0.18
CUX1-210ENST00000497815 NGLY1Q96IV0 654 aa16.18■□□□□ 0.18
CUX1-210ENST00000497815 ARHGEF25Q86VW2 580 aa16.17■□□□□ 0.18
CUX1-210ENST00000497815 MAP3K19Q56UN5 1328 aa16.17■□□□□ 0.18
CUX1-210ENST00000497815 CPDO75976 1380 aa16.16■□□□□ 0.18
CUX1-210ENST00000497815 PPM1GO15355 546 aaPredicted RBP16.16■□□□□ 0.18
CUX1-210ENST00000497815 EMILIN1Q9Y6C2 1016 aa16.15■□□□□ 0.18
CUX1-210ENST00000497815 AMPHP49418 695 aa16.14■□□□□ 0.17
CUX1-210ENST00000497815 BTG4Q9NY30 223 aa16.14■□□□□ 0.17
CUX1-210ENST00000497815 AATKQ6ZMQ8 1374 aa16.13■□□□□ 0.17
CUX1-210ENST00000497815 LTN1O94822 1766 aa16.13■□□□□ 0.17
CUX1-210ENST00000497815 COL14A1Q05707 1796 aaKnown RBP16.13■□□□□ 0.17
CUX1-210ENST00000497815 POLKQ9UBT6 870 aa16.13■□□□□ 0.17
CUX1-210ENST00000497815 AFF2P51816 1311 aa16.13■□□□□ 0.17
CUX1-210ENST00000497815 PLCH1Q4KWH8 1693 aa16.12■□□□□ 0.17
CUX1-210ENST00000497815 AXIN2Q9Y2T1 843 aa16.12■□□□□ 0.17
CUX1-210ENST00000497815 PARD3Q8TEW0 1356 aa16.12■□□□□ 0.17
CUX1-210ENST00000497815 HOXC9P31274 260 aa16.11■□□□□ 0.17
CUX1-210ENST00000497815 STRN4Q9NRL3 753 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms