RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 CDK19Q9BWU1 502 aa13.25□□□□□ -0.29
HDAC3-212ENST00000492407 PLCH1Q4KWH8 1693 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 ALS2Q96Q42 1657 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 ATP7BP35670 1465 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 SPATA31A5Q5VU36 1347 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 SPATA31A7Q8IWB4 1347 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 PAK3O75914 559 aaPredicted RBP13.24□□□□□ -0.29
HDAC3-212ENST00000492407 COL14A1Q05707 1796 aaKnown RBP13.24□□□□□ -0.29
HDAC3-212ENST00000492407 ABCA3Q99758 1704 aa13.24□□□□□ -0.29
HDAC3-212ENST00000492407 BRD4O60885 1362 aaPredicted RBP13.23□□□□□ -0.29
HDAC3-212ENST00000492407 PRDM11Q9NQV5 511 aa13.23□□□□□ -0.29
HDAC3-212ENST00000492407 KIAA1210Q9ULL0 1709 aa13.22□□□□□ -0.29
HDAC3-212ENST00000492407 FAM98CQ17RN3 349 aaKnown RBP13.22□□□□□ -0.29
HDAC3-212ENST00000492407 NBPF8Q3BBV2 869 aa13.22□□□□□ -0.29
HDAC3-212ENST00000492407 PLEKHG5O94827 1062 aa13.21□□□□□ -0.29
HDAC3-212ENST00000492407 BAG6P46379 1132 aa13.21□□□□□ -0.29
HDAC3-212ENST00000492407 ACEP12821 1306 aa13.2□□□□□ -0.3
HDAC3-212ENST00000492407 ITSN1Q15811 1721 aa13.2□□□□□ -0.3
HDAC3-212ENST00000492407 ARHGEF28Q8N1W1 1705 aaKnown RBP13.2□□□□□ -0.3
HDAC3-212ENST00000492407 SRCAPQ6ZRS2 3230 aa13.2□□□□□ -0.3
HDAC3-212ENST00000492407 DEFB132Q7Z7B7 95 aa13.2□□□□□ -0.3
HDAC3-212ENST00000492407 NRAPQ86VF7 1730 aa13.19□□□□□ -0.3
HDAC3-212ENST00000492407 SPATA31A1Q5TZJ5 1347 aa13.19□□□□□ -0.3
HDAC3-212ENST00000492407 A0A0G2JS52 829 aa13.19□□□□□ -0.3
HDAC3-212ENST00000492407 CPDO75976 1380 aa13.19□□□□□ -0.3
HDAC3-212ENST00000492407 KIAA0232Q92628 1395 aa13.19□□□□□ -0.3
HDAC3-212ENST00000492407 CENPJQ9HC77 1338 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-212ENST00000492407 NBPF1Q3BBV0 1214 aa13.18□□□□□ -0.3
HDAC3-212ENST00000492407 DAXXQ9UER7 740 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-212ENST00000492407 BRWD3Q6RI45 1802 aa13.18□□□□□ -0.3
HDAC3-212ENST00000492407 DISP2A7MBM2 1401 aa13.17□□□□□ -0.3
HDAC3-212ENST00000492407 BARGINQ6ZT62 677 aa13.17□□□□□ -0.3
HDAC3-212ENST00000492407 ERICH6Q7L0X2 663 aa13.17□□□□□ -0.3
HDAC3-212ENST00000492407 NLRP13Q86W25 1043 aa13.17□□□□□ -0.3
HDAC3-212ENST00000492407 ABTB2Q8N961 1025 aa13.17□□□□□ -0.3
HDAC3-212ENST00000492407 CRYBG1Q9Y4K1 1723 aa13.16□□□□□ -0.3
HDAC3-212ENST00000492407 USP19O94966 1318 aa13.16□□□□□ -0.3
HDAC3-212ENST00000492407 C11orf95C9JLR9 678 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-212ENST00000492407 SRPK2P78362 688 aaKnown RBP13.16□□□□□ -0.3
HDAC3-212ENST00000492407 FAM196AQ6ZSG2 479 aa13.16□□□□□ -0.3
HDAC3-212ENST00000492407 THRAP3Q9Y2W1 955 aaKnown RBP13.16□□□□□ -0.3
HDAC3-212ENST00000492407 EVA1CP58658 441 aa13.15□□□□□ -0.3
HDAC3-212ENST00000492407 ZC3H6P61129 1189 aaKnown RBP13.15□□□□□ -0.3
HDAC3-212ENST00000492407 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.31
HDAC3-212ENST00000492407 THSD7AQ9UPZ6 1657 aa13.15□□□□□ -0.31
HDAC3-212ENST00000492407 GCP02774 474 aa13.14□□□□□ -0.31
HDAC3-212ENST00000492407 PPIP5K1Q6PFW1 1433 aa13.13□□□□□ -0.31
HDAC3-212ENST00000492407 PARD3Q8TEW0 1356 aa13.13□□□□□ -0.31
HDAC3-212ENST00000492407 CHRNA2Q15822 529 aa13.13□□□□□ -0.31
HDAC3-212ENST00000492407 STRN4Q9NRL3 753 aa13.13□□□□□ -0.31
HDAC3-212ENST00000492407 SSH2Q76I76 1423 aa13.13□□□□□ -0.31
HDAC3-212ENST00000492407 NUTM2GQ5VZR2 741 aa13.12□□□□□ -0.31
HDAC3-212ENST00000492407 TCP11L2Q8N4U5 519 aa13.12□□□□□ -0.31
HDAC3-212ENST00000492407 L3MBTL2Q969R5 705 aa13.12□□□□□ -0.31
HDAC3-212ENST00000492407 ZNF692Q9BU19 519 aaPredicted RBP13.12□□□□□ -0.31
HDAC3-212ENST00000492407 EVC2Q86UK5 1308 aa13.12□□□□□ -0.31
HDAC3-212ENST00000492407 PHRF1Q9P1Y6 1649 aaKnown RBP13.11□□□□□ -0.31
HDAC3-212ENST00000492407 PDE3BQ13370 1112 aa13.11□□□□□ -0.31
HDAC3-212ENST00000492407 CABP2Q9NPB3 220 aa13.11□□□□□ -0.31
HDAC3-212ENST00000492407 CABP1Q9NZU7 370 aa13.11□□□□□ -0.31
HDAC3-212ENST00000492407 AATKQ6ZMQ8 1374 aa13.1□□□□□ -0.31
HDAC3-212ENST00000492407 EN1Q05925 392 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-212ENST00000492407 RGPD1P0DJD0 1748 aa13.1□□□□□ -0.31
HDAC3-212ENST00000492407 CAMTA1Q9Y6Y1 1673 aa13.09□□□□□ -0.31
HDAC3-212ENST00000492407 USP6P35125 1406 aa13.09□□□□□ -0.31
HDAC3-212ENST00000492407 LARP1Q6PKG0 1096 aaKnown RBP13.09□□□□□ -0.31
HDAC3-212ENST00000492407 NRKQ7Z2Y5 1582 aa13.09□□□□□ -0.31
HDAC3-212ENST00000492407 CAMKK2Q96RR4 588 aa13.09□□□□□ -0.31
HDAC3-212ENST00000492407 LRP5O75197 1615 aa13.09□□□□□ -0.31
HDAC3-212ENST00000492407 NLRP6P59044 892 aa13.08□□□□□ -0.32
HDAC3-212ENST00000492407 FAM182BQ5T319 152 aa13.08□□□□□ -0.32
HDAC3-212ENST00000492407 TRIM37O94972 964 aa13.07□□□□□ -0.32
HDAC3-212ENST00000492407 KCNH5Q8NCM2 988 aa13.07□□□□□ -0.32
HDAC3-212ENST00000492407 USP35Q9P2H5 1018 aa13.07□□□□□ -0.32
HDAC3-212ENST00000492407 LMO7Q8WWI1 1683 aa13.07□□□□□ -0.32
HDAC3-212ENST00000492407 CRB1P82279 1406 aa13.06□□□□□ -0.32
HDAC3-212ENST00000492407 APBA3O96018 575 aa13.06□□□□□ -0.32
HDAC3-212ENST00000492407 CDCA7Q9BWT1 371 aaPredicted RBP13.06□□□□□ -0.32
HDAC3-212ENST00000492407 TTC21AQ8NDW8 1320 aa13.06□□□□□ -0.32
HDAC3-212ENST00000492407 COL5A2P05997 1499 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-212ENST00000492407 SLIT3O75094 1523 aa13.05□□□□□ -0.32
HDAC3-212ENST00000492407 PSDA5PKW4 1024 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-212ENST00000492407 EZH2Q15910 746 aaKnown RBP13.05□□□□□ -0.32
HDAC3-212ENST00000492407 ROCK2O75116 1388 aaKnown RBP13.05□□□□□ -0.32
HDAC3-212ENST00000492407 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
HDAC3-212ENST00000492407 NBPF14Q5TI25 921 aa13.04□□□□□ -0.32
HDAC3-212ENST00000492407 QRICH2Q9H0J4 1663 aa13.03□□□□□ -0.32
HDAC3-212ENST00000492407 R3HDM1Q15032 1099 aaKnown RBP13.03□□□□□ -0.32
HDAC3-212ENST00000492407 ARHGEF25Q86VW2 580 aa13.03□□□□□ -0.32
HDAC3-212ENST00000492407 SIN3AQ96ST3 1273 aa13.03□□□□□ -0.32
HDAC3-212ENST00000492407 TTC21BQ7Z4L5 1316 aa13.03□□□□□ -0.32
HDAC3-212ENST00000492407 TNS1Q9HBL0 1735 aaKnown RBP13.02□□□□□ -0.32
HDAC3-212ENST00000492407 PUS7Q96PZ0 661 aaKnown RBP13.02□□□□□ -0.33
HDAC3-212ENST00000492407 WDR17Q8IZU2 1322 aa13.02□□□□□ -0.33
HDAC3-212ENST00000492407 BCL9O00512 1426 aa13.02□□□□□ -0.33
HDAC3-212ENST00000492407 CPSF1Q10570 1443 aaKnown RBP13.02□□□□□ -0.33
HDAC3-212ENST00000492407 TRPM1Q7Z4N2 1603 aa13.02□□□□□ -0.33
HDAC3-212ENST00000492407 PLSCR1O15162 318 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 NEUROD1Q13562 356 aa13.01□□□□□ -0.33
HDAC3-212ENST00000492407 DDB1Q16531 1140 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms