RNA–Protein interactions for RNA: ENST00000487496.1

SPEN-205, Transcript of spen family transcriptional repressor, humanhuman

TSL 1 (best)

Gene SPEN, Length 543 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-205ENST00000487496 GJD4Q96KN9 370 aaPredicted RBP16.33■□□□□ 0.2
SPEN-205ENST00000487496 TOPAZ1Q8N9V7 1692 aa16.33■□□□□ 0.2
SPEN-205ENST00000487496 FAM83GA6ND36 823 aa16.32■□□□□ 0.2
SPEN-205ENST00000487496 PPIP5K1Q6PFW1 1433 aa16.32■□□□□ 0.2
SPEN-205ENST00000487496 EVC2Q86UK5 1308 aa16.32■□□□□ 0.2
SPEN-205ENST00000487496 CARD11Q9BXL7 1154 aa16.32■□□□□ 0.2
SPEN-205ENST00000487496 UPF1Q92900 1129 aaKnown RBP eCLIP16.31■□□□□ 0.2
SPEN-205ENST00000487496 CABP1Q9NZU7 370 aa16.31■□□□□ 0.2
SPEN-205ENST00000487496 ABCA3Q99758 1704 aa16.31■□□□□ 0.2
SPEN-205ENST00000487496 RALGAPBQ86X10 1494 aa16.29■□□□□ 0.2
SPEN-205ENST00000487496 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.28■□□□□ 0.2
SPEN-205ENST00000487496 VPS72Q15906 364 aa16.28■□□□□ 0.2
SPEN-205ENST00000487496 NUTM2GQ5VZR2 741 aa16.28■□□□□ 0.2
SPEN-205ENST00000487496 ABTB2Q8N961 1025 aa16.28■□□□□ 0.2
SPEN-205ENST00000487496 PCGF6Q9BYE7 350 aa16.26■□□□□ 0.19
SPEN-205ENST00000487496 BTG4Q9NY30 223 aa16.26■□□□□ 0.19
SPEN-205ENST00000487496 SBNO2Q9Y2G9 1366 aa16.26■□□□□ 0.19
SPEN-205ENST00000487496 CRYBG1Q9Y4K1 1723 aa16.25■□□□□ 0.19
SPEN-205ENST00000487496 PRDM11Q9NQV5 511 aa16.25■□□□□ 0.19
SPEN-205ENST00000487496 GLI3P10071 1580 aa16.25■□□□□ 0.19
SPEN-205ENST00000487496 NWD2Q9ULI1 1742 aa16.25■□□□□ 0.19
SPEN-205ENST00000487496 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
SPEN-205ENST00000487496 PLCH1Q4KWH8 1693 aa16.24■□□□□ 0.19
SPEN-205ENST00000487496 CCDC9Q9Y3X0 531 aaKnown RBP16.24■□□□□ 0.19
SPEN-205ENST00000487496 USP6P35125 1406 aa16.24■□□□□ 0.19
SPEN-205ENST00000487496 ZC3H6P61129 1189 aaKnown RBP16.23■□□□□ 0.19
SPEN-205ENST00000487496 NLRP13Q86W25 1043 aa16.23■□□□□ 0.19
SPEN-205ENST00000487496 ATAD2Q6PL18 1390 aa16.23■□□□□ 0.19
SPEN-205ENST00000487496 KIAA0232Q92628 1395 aa16.23■□□□□ 0.19
SPEN-205ENST00000487496 COL14A1Q05707 1796 aaKnown RBP16.23■□□□□ 0.19
SPEN-205ENST00000487496 ZNF692Q9BU19 519 aaPredicted RBP16.22■□□□□ 0.19
SPEN-205ENST00000487496 USP19O94966 1318 aa16.21■□□□□ 0.19
SPEN-205ENST00000487496 SSH2Q76I76 1423 aa16.21■□□□□ 0.19
SPEN-205ENST00000487496 ONECUT3O60422 494 aaPredicted RBP16.21■□□□□ 0.19
SPEN-205ENST00000487496 CHRNA2Q15822 529 aa16.21■□□□□ 0.19
SPEN-205ENST00000487496 CLSPNQ9HAW4 1339 aa16.2■□□□□ 0.18
SPEN-205ENST00000487496 PHRF1Q9P1Y6 1649 aaKnown RBP16.2■□□□□ 0.18
SPEN-205ENST00000487496 GCP02774 474 aa16.2■□□□□ 0.18
SPEN-205ENST00000487496 SEPT12Q8IYM1 358 aa16.2■□□□□ 0.18
SPEN-205ENST00000487496 NRAPQ86VF7 1730 aa16.19■□□□□ 0.18
SPEN-205ENST00000487496 NLRP6P59044 892 aa16.19■□□□□ 0.18
SPEN-205ENST00000487496 CPSF1Q10570 1443 aaKnown RBP16.19■□□□□ 0.18
SPEN-205ENST00000487496 ST20-MTHFSA0A0A6YYL1 179 aa16.18■□□□□ 0.18
SPEN-205ENST00000487496 TIMELESSQ9UNS1 1208 aa16.18■□□□□ 0.18
SPEN-205ENST00000487496 SPATA31A5Q5VU36 1347 aa16.18■□□□□ 0.18
SPEN-205ENST00000487496 TTC21BQ7Z4L5 1316 aa16.18■□□□□ 0.18
SPEN-205ENST00000487496 SPATA31A7Q8IWB4 1347 aa16.18■□□□□ 0.18
SPEN-205ENST00000487496 NRKQ7Z2Y5 1582 aa16.17■□□□□ 0.18
SPEN-205ENST00000487496 CPDO75976 1380 aa16.17■□□□□ 0.18
SPEN-205ENST00000487496 TESK2Q96S53 571 aa16.17■□□□□ 0.18
SPEN-205ENST00000487496 FAM98CQ17RN3 349 aaKnown RBP16.16■□□□□ 0.18
SPEN-205ENST00000487496 TMC1Q8TDI8 760 aa16.16■□□□□ 0.18
SPEN-205ENST00000487496 PUS7Q96PZ0 661 aaKnown RBP16.16■□□□□ 0.18
SPEN-205ENST00000487496 STRN4Q9NRL3 753 aa16.16■□□□□ 0.18
SPEN-205ENST00000487496 KTN1Q86UP2 1357 aaKnown RBP16.15■□□□□ 0.18
SPEN-205ENST00000487496 SLC12A5Q9H2X9 1139 aa16.15■□□□□ 0.18
SPEN-205ENST00000487496 TTC21AQ8NDW8 1320 aa16.15■□□□□ 0.18
SPEN-205ENST00000487496 A0A0G2JS52 829 aa16.14■□□□□ 0.17
SPEN-205ENST00000487496 SLC24A1O60721 1099 aa16.14■□□□□ 0.17
SPEN-205ENST00000487496 EVA1CP58658 441 aa16.14■□□□□ 0.17
SPEN-205ENST00000487496 MYT1Q01538 1121 aa16.14■□□□□ 0.17
SPEN-205ENST00000487496 SPATA31A1Q5TZJ5 1347 aa16.14■□□□□ 0.17
SPEN-205ENST00000487496 AKAP12Q02952 1782 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 KRT27Q7Z3Y8 459 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 CD163L1Q9NR16 1453 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 PIK3C2AO00443 1686 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 CAMTA1Q9Y6Y1 1673 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 SLIT3O75094 1523 aa16.13■□□□□ 0.17
SPEN-205ENST00000487496 CCDC125Q86Z20 511 aa16.12■□□□□ 0.17
SPEN-205ENST00000487496 USP47Q96K76 1375 aa16.12■□□□□ 0.17
SPEN-205ENST00000487496 BRWD3Q6RI45 1802 aa16.11■□□□□ 0.17
SPEN-205ENST00000487496 ZBTB7CA1YPR0 619 aa16.11■□□□□ 0.17
SPEN-205ENST00000487496 HDGFL2Q7Z4V5 671 aaPredicted RBP16.11■□□□□ 0.17
SPEN-205ENST00000487496 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.11■□□□□ 0.17
SPEN-205ENST00000487496 LARP1Q6PKG0 1096 aaKnown RBP16.1■□□□□ 0.17
SPEN-205ENST00000487496 KCNH5Q8NCM2 988 aa16.1■□□□□ 0.17
SPEN-205ENST00000487496 CCER1Q8TC90 406 aaPredicted RBP16.1■□□□□ 0.17
SPEN-205ENST00000487496 TERF2IPQ9NYB0 399 aa16.1■□□□□ 0.17
SPEN-205ENST00000487496 USP35Q9P2H5 1018 aa16.1■□□□□ 0.17
SPEN-205ENST00000487496 LMO7Q8WWI1 1683 aa16.1■□□□□ 0.17
SPEN-205ENST00000487496 ARHGEF25Q86VW2 580 aa16.09■□□□□ 0.17
SPEN-205ENST00000487496 ZRANB1Q9UGI0 708 aa16.09■□□□□ 0.17
SPEN-205ENST00000487496 AATKQ6ZMQ8 1374 aa16.09■□□□□ 0.17
SPEN-205ENST00000487496 MON2Q7Z3U7 1717 aa16.08■□□□□ 0.17
SPEN-205ENST00000487496 SOX12O15370 315 aa16.08■□□□□ 0.16
SPEN-205ENST00000487496 TMF1P82094 1093 aa16.08■□□□□ 0.16
SPEN-205ENST00000487496 NME9Q86XW9 330 aa16.08■□□□□ 0.16
SPEN-205ENST00000487496 A0A1W2PP64 1363 aa16.08■□□□□ 0.16
SPEN-205ENST00000487496 USP31Q70CQ4 1352 aa16.08■□□□□ 0.16
SPEN-205ENST00000487496 COL5A2P05997 1499 aaPredicted RBP16.08■□□□□ 0.16
SPEN-205ENST00000487496 BARGINQ6ZT62 677 aa16.07■□□□□ 0.16
SPEN-205ENST00000487496 NINLQ9Y2I6 1382 aa16.07■□□□□ 0.16
SPEN-205ENST00000487496 BLMP54132 1417 aaPredicted RBP16.07■□□□□ 0.16
SPEN-205ENST00000487496 THSD7AQ9UPZ6 1657 aa16.06■□□□□ 0.16
SPEN-205ENST00000487496 EDC4Q6P2E9 1401 aaKnown RBP16.06■□□□□ 0.16
SPEN-205ENST00000487496 TCP11L2Q8N4U5 519 aa16.06■□□□□ 0.16
SPEN-205ENST00000487496 AXIN2Q9Y2T1 843 aa16.06■□□□□ 0.16
SPEN-205ENST00000487496 FAM182BQ5T319 152 aa16.05■□□□□ 0.16
SPEN-205ENST00000487496 THRAP3Q9Y2W1 955 aaKnown RBP16.04■□□□□ 0.16
SPEN-205ENST00000487496 EP400Q96L91 3159 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms