RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 NWD2Q9ULI1 1742 aa35.4■■■■□ 3.26
LIME1-206ENST00000487026 ACEP12821 1306 aa35.39■■■■□ 3.26
LIME1-206ENST00000487026 SEPT12Q8IYM1 358 aa35.39■■■■□ 3.26
LIME1-206ENST00000487026 CENPJQ9HC77 1338 aaPredicted RBP35.38■■■■□ 3.25
LIME1-206ENST00000487026 EP400Q96L91 3159 aa35.38■■■■□ 3.25
LIME1-206ENST00000487026 NBPF8Q3BBV2 869 aa35.37■■■■□ 3.25
LIME1-206ENST00000487026 NUTM2GQ5VZR2 741 aa35.37■■■■□ 3.25
LIME1-206ENST00000487026 PLEKHG3A1L390 1219 aa35.35■■■■□ 3.25
LIME1-206ENST00000487026 SRPK2P78362 688 aaKnown RBP35.35■■■■□ 3.25
LIME1-206ENST00000487026 CABP2Q9NPB3 220 aa35.34■■■■□ 3.25
LIME1-206ENST00000487026 POLR3AO14802 1390 aaPredicted RBP35.34■■■■□ 3.25
LIME1-206ENST00000487026 ONECUT3O60422 494 aaPredicted RBP35.32■■■■□ 3.24
LIME1-206ENST00000487026 BRWD3Q6RI45 1802 aa35.32■■■■□ 3.24
LIME1-206ENST00000487026 TOPAZ1Q8N9V7 1692 aa35.31■■■■□ 3.24
LIME1-206ENST00000487026 PRDM11Q9NQV5 511 aa35.31■■■■□ 3.24
LIME1-206ENST00000487026 CRYBG1Q9Y4K1 1723 aa35.31■■■■□ 3.24
LIME1-206ENST00000487026 CCDC125Q86Z20 511 aa35.3■■■■□ 3.24
LIME1-206ENST00000487026 COL14A1Q05707 1796 aaKnown RBP35.3■■■■□ 3.24
LIME1-206ENST00000487026 NRAPQ86VF7 1730 aa35.29■■■■□ 3.24
LIME1-206ENST00000487026 FAM98CQ17RN3 349 aaKnown RBP35.28■■■■□ 3.24
LIME1-206ENST00000487026 A0A0G2JS52 829 aa35.27■■■■□ 3.24
LIME1-206ENST00000487026 MYT1Q01538 1121 aa35.27■■■■□ 3.24
LIME1-206ENST00000487026 ZC3H6P61129 1189 aaKnown RBP35.26■■■■□ 3.24
LIME1-206ENST00000487026 CHRNA2Q15822 529 aa35.26■■■■□ 3.24
LIME1-206ENST00000487026 KIAA0232Q92628 1395 aa35.25■■■■□ 3.23
LIME1-206ENST00000487026 PPIP5K1Q6PFW1 1433 aa35.25■■■■□ 3.23
LIME1-206ENST00000487026 KRT27Q7Z3Y8 459 aa35.24■■■■□ 3.23
LIME1-206ENST00000487026 ABTB2Q8N961 1025 aa35.24■■■■□ 3.23
LIME1-206ENST00000487026 QRICH2Q9H0J4 1663 aa35.24■■■■□ 3.23
LIME1-206ENST00000487026 TRPM1Q7Z4N2 1603 aa35.21■■■■□ 3.23
LIME1-206ENST00000487026 CABP1Q9NZU7 370 aa35.21■■■■□ 3.23
LIME1-206ENST00000487026 SPATA31A5Q5VU36 1347 aa35.2■■■■□ 3.23
LIME1-206ENST00000487026 SPATA31A7Q8IWB4 1347 aa35.2■■■■□ 3.23
LIME1-206ENST00000487026 ROCK2O75116 1388 aaKnown RBP35.19■■■■□ 3.22
LIME1-206ENST00000487026 PHRF1Q9P1Y6 1649 aaKnown RBP35.19■■■■□ 3.22
LIME1-206ENST00000487026 BLMP54132 1417 aaPredicted RBP35.18■■■■□ 3.22
LIME1-206ENST00000487026 STRN4Q9NRL3 753 aa35.17■■■■□ 3.22
LIME1-206ENST00000487026 DEFB132Q7Z7B7 95 aa35.15■■■■□ 3.22
LIME1-206ENST00000487026 EVC2Q86UK5 1308 aa35.14■■■■□ 3.22
LIME1-206ENST00000487026 ZRANB1Q9UGI0 708 aa35.14■■■■□ 3.22
LIME1-206ENST00000487026 SF3B2Q13435 895 aaKnown RBP35.12■■■■□ 3.21
LIME1-206ENST00000487026 FAM182BQ5T319 152 aa35.11■■■■□ 3.21
LIME1-206ENST00000487026 NLRP13Q86W25 1043 aa35.11■■■■□ 3.21
LIME1-206ENST00000487026 USP19O94966 1318 aa35.1■■■■□ 3.21
LIME1-206ENST00000487026 SPATA31A1Q5TZJ5 1347 aa35.09■■■■□ 3.21
LIME1-206ENST00000487026 GCP02774 474 aa35.08■■■■□ 3.21
LIME1-206ENST00000487026 EVA1CP58658 441 aa35.08■■■■□ 3.21
LIME1-206ENST00000487026 NRKQ7Z2Y5 1582 aa35.08■■■■□ 3.21
LIME1-206ENST00000487026 USP6P35125 1406 aa35.06■■■■□ 3.2
LIME1-206ENST00000487026 USP35Q9P2H5 1018 aa35.06■■■■□ 3.2
LIME1-206ENST00000487026 NLRP6P59044 892 aa35.05■■■■□ 3.2
LIME1-206ENST00000487026 BRD4O60885 1362 aaPredicted RBP35.03■■■■□ 3.2
LIME1-206ENST00000487026 CPDO75976 1380 aa35.03■■■■□ 3.2
LIME1-206ENST00000487026 CAMTA1Q9Y6Y1 1673 aa35.02■■■■□ 3.2
LIME1-206ENST00000487026 LARP1Q6PKG0 1096 aaKnown RBP35.02■■■■□ 3.2
LIME1-206ENST00000487026 ZBTB7CA1YPR0 619 aa35.01■■■■□ 3.2
LIME1-206ENST00000487026 THSD7AQ9UPZ6 1657 aa35.01■■■■□ 3.19
LIME1-206ENST00000487026 SSH2Q76I76 1423 aa35■■■■□ 3.19
LIME1-206ENST00000487026 CARD11Q9BXL7 1154 aa34.99■■■■□ 3.19
LIME1-206ENST00000487026 SRCAPQ6ZRS2 3230 aa34.99■■■■□ 3.19
LIME1-206ENST00000487026 TONSLQ96HA7 1378 aa34.97■■■■□ 3.19
LIME1-206ENST00000487026 LMO7Q8WWI1 1683 aa34.95■■■■□ 3.18
LIME1-206ENST00000487026 BAG6P46379 1132 aa34.94■■■■□ 3.18
LIME1-206ENST00000487026 ZNF692Q9BU19 519 aaPredicted RBP34.94■■■■□ 3.18
LIME1-206ENST00000487026 TTC21BQ7Z4L5 1316 aa34.93■■■■□ 3.18
LIME1-206ENST00000487026 TRIM26Q12899 539 aaPredicted RBP34.93■■■■□ 3.18
LIME1-206ENST00000487026 BARGINQ6ZT62 677 aa34.92■■■■□ 3.18
LIME1-206ENST00000487026 TCP11L2Q8N4U5 519 aa34.91■■■■□ 3.18
LIME1-206ENST00000487026 PIK3C2AO00443 1686 aa34.9■■■■□ 3.18
LIME1-206ENST00000487026 EN1Q05925 392 aaPredicted RBP34.89■■■■□ 3.18
LIME1-206ENST00000487026 SLIT3O75094 1523 aa34.89■■■■□ 3.18
LIME1-206ENST00000487026 COL5A2P05997 1499 aaPredicted RBP34.88■■■■□ 3.17
LIME1-206ENST00000487026 SOX12O15370 315 aa34.86■■■■□ 3.17
LIME1-206ENST00000487026 PDE3BQ13370 1112 aa34.86■■■■□ 3.17
LIME1-206ENST00000487026 FAM196AQ6ZSG2 479 aa34.86■■■■□ 3.17
LIME1-206ENST00000487026 CPSF1Q10570 1443 aaKnown RBP34.86■■■■□ 3.17
LIME1-206ENST00000487026 AATKQ6ZMQ8 1374 aa34.86■■■■□ 3.17
LIME1-206ENST00000487026 KTN1Q86UP2 1357 aaKnown RBP34.86■■■■□ 3.17
LIME1-206ENST00000487026 AKAP12Q02952 1782 aa34.85■■■■□ 3.17
LIME1-206ENST00000487026 SBNO2Q9Y2G9 1366 aa34.85■■■■□ 3.17
LIME1-206ENST00000487026 TRIM37O94972 964 aa34.84■■■■□ 3.17
LIME1-206ENST00000487026 AXIN2Q9Y2T1 843 aa34.83■■■■□ 3.17
LIME1-206ENST00000487026 THRAP3Q9Y2W1 955 aaKnown RBP34.83■■■■□ 3.17
LIME1-206ENST00000487026 RGPD1P0DJD0 1748 aa34.83■■■■□ 3.17
LIME1-206ENST00000487026 TTC21AQ8NDW8 1320 aa34.82■■■■□ 3.17
LIME1-206ENST00000487026 TMC1Q8TDI8 760 aa34.81■■■■□ 3.16
LIME1-206ENST00000487026 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.8■■■■□ 3.16
LIME1-206ENST00000487026 CRB1P82279 1406 aa34.8■■■■□ 3.16
LIME1-206ENST00000487026 ARHGEF25Q86VW2 580 aa34.79■■■■□ 3.16
LIME1-206ENST00000487026 PSDA5PKW4 1024 aaPredicted RBP34.78■■■■□ 3.16
LIME1-206ENST00000487026 TOM1L2Q6ZVM7 507 aa34.78■■■■□ 3.16
LIME1-206ENST00000487026 KCNH5Q8NCM2 988 aa34.78■■■■□ 3.16
LIME1-206ENST00000487026 SLC12A5Q9H2X9 1139 aa34.77■■■■□ 3.16
LIME1-206ENST00000487026 COL18A1P39060 1754 aa34.77■■■■□ 3.16
LIME1-206ENST00000487026 EZH2Q15910 746 aaKnown RBP34.76■■■■□ 3.16
LIME1-206ENST00000487026 TNS1Q9HBL0 1735 aaKnown RBP34.75■■■■□ 3.15
LIME1-206ENST00000487026 APBA3O96018 575 aa34.74■■■■□ 3.15
LIME1-206ENST00000487026 CD163L1Q9NR16 1453 aa34.73■■■■□ 3.15
LIME1-206ENST00000487026 NME9Q86XW9 330 aa34.72■■■■□ 3.15
LIME1-206ENST00000487026 DISP2A7MBM2 1401 aa34.72■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms