RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 ARHGEF10O15013 1369 aa17.26■□□□□ 0.35
PTPRF-213ENST00000481019 NUTM2GQ5VZR2 741 aa17.25■□□□□ 0.35
PTPRF-213ENST00000481019 AKAP12Q02952 1782 aa17.25■□□□□ 0.35
PTPRF-213ENST00000481019 CD163L1Q9NR16 1453 aa17.24■□□□□ 0.35
PTPRF-213ENST00000481019 SSH2Q76I76 1423 aa17.24■□□□□ 0.35
PTPRF-213ENST00000481019 ATAD2Q6PL18 1390 aa17.24■□□□□ 0.35
PTPRF-213ENST00000481019 USP6P35125 1406 aa17.23■□□□□ 0.35
PTPRF-213ENST00000481019 CPSF1Q10570 1443 aaKnown RBP17.22■□□□□ 0.35
PTPRF-213ENST00000481019 NGLY1Q96IV0 654 aa17.22■□□□□ 0.35
PTPRF-213ENST00000481019 SLC12A5Q9H2X9 1139 aa17.22■□□□□ 0.35
PTPRF-213ENST00000481019 NRKQ7Z2Y5 1582 aa17.21■□□□□ 0.35
PTPRF-213ENST00000481019 PHRF1Q9P1Y6 1649 aaKnown RBP17.21■□□□□ 0.35
PTPRF-213ENST00000481019 PIK3C2AO00443 1686 aa17.2■□□□□ 0.34
PTPRF-213ENST00000481019 BCL9LQ86UU0 1499 aa17.19■□□□□ 0.34
PTPRF-213ENST00000481019 MON2Q7Z3U7 1717 aa17.19■□□□□ 0.34
PTPRF-213ENST00000481019 HSPA5P11021 654 aaKnown RBP17.19■□□□□ 0.34
PTPRF-213ENST00000481019 FNBP4Q8N3X1 1017 aaPredicted RBP17.19■□□□□ 0.34
PTPRF-213ENST00000481019 TMC1Q8TDI8 760 aa17.19■□□□□ 0.34
PTPRF-213ENST00000481019 FAM83GA6ND36 823 aa17.18■□□□□ 0.34
PTPRF-213ENST00000481019 ZNF772Q68DY9 489 aaPredicted RBP17.18■□□□□ 0.34
PTPRF-213ENST00000481019 ABTB2Q8N961 1025 aa17.18■□□□□ 0.34
PTPRF-213ENST00000481019 SLIT2O94813 1529 aa17.17■□□□□ 0.34
PTPRF-213ENST00000481019 PLCH1Q4KWH8 1693 aa17.17■□□□□ 0.34
PTPRF-213ENST00000481019 HAP1P54257 671 aaPredicted RBP17.17■□□□□ 0.34
PTPRF-213ENST00000481019 PUS7Q96PZ0 661 aaKnown RBP17.17■□□□□ 0.34
PTPRF-213ENST00000481019 TTC21BQ7Z4L5 1316 aa17.17■□□□□ 0.34
PTPRF-213ENST00000481019 KTN1Q86UP2 1357 aaKnown RBP17.16■□□□□ 0.34
PTPRF-213ENST00000481019 TMF1P82094 1093 aa17.16■□□□□ 0.34
PTPRF-213ENST00000481019 QTRT2Q9H974 415 aaKnown RBP17.16■□□□□ 0.34
PTPRF-213ENST00000481019 ZRANB1Q9UGI0 708 aa17.16■□□□□ 0.34
PTPRF-213ENST00000481019 USP21Q9UK80 565 aa17.16■□□□□ 0.34
PTPRF-213ENST00000481019 USP19O94966 1318 aa17.16■□□□□ 0.34
PTPRF-213ENST00000481019 A0A1W2PP64 1363 aa17.15■□□□□ 0.34
PTPRF-213ENST00000481019 BRD4O60885 1362 aaPredicted RBP17.15■□□□□ 0.34
PTPRF-213ENST00000481019 ATRNO75882 1429 aa17.14■□□□□ 0.33
PTPRF-213ENST00000481019 MYOM1P52179 1685 aa17.14■□□□□ 0.33
PTPRF-213ENST00000481019 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
PTPRF-213ENST00000481019 ZC3H6P61129 1189 aaKnown RBP17.13■□□□□ 0.33
PTPRF-213ENST00000481019 EIF4G2P78344 907 aaKnown RBP eCLIP17.13■□□□□ 0.33
PTPRF-213ENST00000481019 KIAA0232Q92628 1395 aa17.13■□□□□ 0.33
PTPRF-213ENST00000481019 SLIT3O75094 1523 aa17.12■□□□□ 0.33
PTPRF-213ENST00000481019 C11orf95C9JLR9 678 aaPredicted RBP17.12■□□□□ 0.33
PTPRF-213ENST00000481019 NLRP6P59044 892 aa17.12■□□□□ 0.33
PTPRF-213ENST00000481019 CHRNA2Q15822 529 aa17.12■□□□□ 0.33
PTPRF-213ENST00000481019 NME9Q86XW9 330 aa17.12■□□□□ 0.33
PTPRF-213ENST00000481019 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.12■□□□□ 0.33
PTPRF-213ENST00000481019 NRAPQ86VF7 1730 aa17.12■□□□□ 0.33
PTPRF-213ENST00000481019 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.12■□□□□ 0.33
PTPRF-213ENST00000481019 COL14A1Q05707 1796 aaKnown RBP17.11■□□□□ 0.33
PTPRF-213ENST00000481019 RXRBP28702 533 aa17.11■□□□□ 0.33
PTPRF-213ENST00000481019 UNC5CLQ8IV45 518 aa17.11■□□□□ 0.33
PTPRF-213ENST00000481019 NWD2Q9ULI1 1742 aa17.1■□□□□ 0.33
PTPRF-213ENST00000481019 GCP02774 474 aa17.1■□□□□ 0.33
PTPRF-213ENST00000481019 HDGFL2Q7Z4V5 671 aaPredicted RBP17.1■□□□□ 0.33
PTPRF-213ENST00000481019 NLRP13Q86W25 1043 aa17.1■□□□□ 0.33
PTPRF-213ENST00000481019 SLC24A1O60721 1099 aa17.09■□□□□ 0.33
PTPRF-213ENST00000481019 BTG4Q9NY30 223 aa17.09■□□□□ 0.33
PTPRF-213ENST00000481019 TRPC5Q9UL62 973 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-213ENST00000481019 TTC21AQ8NDW8 1320 aa17.09■□□□□ 0.33
PTPRF-213ENST00000481019 RGS12O14924 1447 aa17.09■□□□□ 0.33
PTPRF-213ENST00000481019 EDC4Q6P2E9 1401 aaKnown RBP17.09■□□□□ 0.33
PTPRF-213ENST00000481019 GLI3P10071 1580 aa17.09■□□□□ 0.33
PTPRF-213ENST00000481019 NINLQ9Y2I6 1382 aa17.08■□□□□ 0.32
PTPRF-213ENST00000481019 SOCS7O14512 581 aa17.08■□□□□ 0.32
PTPRF-213ENST00000481019 PRDM11Q9NQV5 511 aa17.08■□□□□ 0.32
PTPRF-213ENST00000481019 TERF2IPQ9NYB0 399 aa17.08■□□□□ 0.32
PTPRF-213ENST00000481019 LMO7Q8WWI1 1683 aa17.07■□□□□ 0.32
PTPRF-213ENST00000481019 ANKRD36BQ8N2N9 1353 aa17.07■□□□□ 0.32
PTPRF-213ENST00000481019 RBM6P78332 1123 aaKnown RBP17.07■□□□□ 0.32
PTPRF-213ENST00000481019 USP54Q70EL1 1684 aa17.07■□□□□ 0.32
PTPRF-213ENST00000481019 NFAT5O94916 1531 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 CPDO75976 1380 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 USP31Q70CQ4 1352 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 SOX12O15370 315 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 CARD14Q9BXL6 1004 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 CAMTA1Q9Y6Y1 1673 aa17.06■□□□□ 0.32
PTPRF-213ENST00000481019 GJD4Q96KN9 370 aaPredicted RBP17.05■□□□□ 0.32
PTPRF-213ENST00000481019 POLR3GLQ9BT43 218 aa17.05■□□□□ 0.32
PTPRF-213ENST00000481019 COL18A1P39060 1754 aa17.05■□□□□ 0.32
PTPRF-213ENST00000481019 VPS72Q15906 364 aa17.04■□□□□ 0.32
PTPRF-213ENST00000481019 CDCA8Q53HL2 280 aa17.04■□□□□ 0.32
PTPRF-213ENST00000481019 CDK12Q9NYV4 1490 aaPredicted RBP17.04■□□□□ 0.32
PTPRF-213ENST00000481019 OVOS2A0A0J9YW53 1432 aa17.04■□□□□ 0.32
PTPRF-213ENST00000481019 OVOS2Q6IE36 1432 aa17.04■□□□□ 0.32
PTPRF-213ENST00000481019 ZBTB7CA1YPR0 619 aa17.03■□□□□ 0.32
PTPRF-213ENST00000481019 FBLN1P23142 703 aa17.01■□□□□ 0.31
PTPRF-213ENST00000481019 ARHGEF25Q86VW2 580 aa17.01■□□□□ 0.31
PTPRF-213ENST00000481019 AXIN2Q9Y2T1 843 aa17.01■□□□□ 0.31
PTPRF-213ENST00000481019 RGPD5Q99666 1765 aa17■□□□□ 0.31
PTPRF-213ENST00000481019 STRN4Q9NRL3 753 aa17■□□□□ 0.31
PTPRF-213ENST00000481019 CCDC9Q9Y3X0 531 aaKnown RBP17■□□□□ 0.31
PTPRF-213ENST00000481019 NSD3Q9BZ95 1437 aa16.99■□□□□ 0.31
PTPRF-213ENST00000481019 FYB1O15117 783 aa16.99■□□□□ 0.31
PTPRF-213ENST00000481019 AATKQ6ZMQ8 1374 aa16.99■□□□□ 0.31
PTPRF-213ENST00000481019 COL5A2P05997 1499 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-213ENST00000481019 KIF7Q2M1P5 1343 aa16.98■□□□□ 0.31
PTPRF-213ENST00000481019 SPATA31A5Q5VU36 1347 aa16.98■□□□□ 0.31
PTPRF-213ENST00000481019 SPATA31A7Q8IWB4 1347 aa16.98■□□□□ 0.31
PTPRF-213ENST00000481019 LARP1Q6PKG0 1096 aaKnown RBP16.98■□□□□ 0.31
PTPRF-213ENST00000481019 GGNBP2Q9H3C7 697 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms