RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TRPM3Q9HCF6 1732 aaPredicted RBP25.44■■□□□ 1.66
VIM-204ENST00000478746 PAK3O75914 559 aaPredicted RBP25.44■■□□□ 1.66
VIM-204ENST00000478746 MINK1Q8N4C8 1332 aaPredicted RBP25.43■■□□□ 1.66
VIM-204ENST00000478746 EZH2Q15910 746 aaKnown RBP25.43■■□□□ 1.66
VIM-204ENST00000478746 NGDNQ8NEJ9 315 aaKnown RBP25.43■■□□□ 1.66
VIM-204ENST00000478746 PRDM11Q9NQV5 511 aa25.43■■□□□ 1.66
VIM-204ENST00000478746 EIF3AQ14152 1382 aaKnown RBP25.42■■□□□ 1.66
VIM-204ENST00000478746 ALS2Q96Q42 1657 aa25.42■■□□□ 1.66
VIM-204ENST00000478746 PRR36Q9H6K5 1346 aa25.41■■□□□ 1.66
VIM-204ENST00000478746 DISP2A7MBM2 1401 aa25.41■■□□□ 1.66
VIM-204ENST00000478746 ADGRB2O60241 1585 aa25.4■■□□□ 1.66
VIM-204ENST00000478746 WASLO00401 505 aaPredicted RBP25.4■■□□□ 1.66
VIM-204ENST00000478746 TRIM37O94972 964 aa25.39■■□□□ 1.66
VIM-204ENST00000478746 FAM196AQ6ZSG2 479 aa25.39■■□□□ 1.66
VIM-204ENST00000478746 CAMKK2Q96RR4 588 aa25.39■■□□□ 1.66
VIM-204ENST00000478746 SPATA31A1Q5TZJ5 1347 aa25.37■■□□□ 1.65
VIM-204ENST00000478746 THSD7AQ9UPZ6 1657 aa25.36■■□□□ 1.65
VIM-204ENST00000478746 APBA3O96018 575 aa25.36■■□□□ 1.65
VIM-204ENST00000478746 STRN4Q9NRL3 753 aa25.36■■□□□ 1.65
VIM-204ENST00000478746 CHRNA2Q15822 529 aa25.35■■□□□ 1.65
VIM-204ENST00000478746 TULP4Q9NRJ4 1543 aa25.35■■□□□ 1.65
VIM-204ENST00000478746 KDM2AQ9Y2K7 1162 aa25.34■■□□□ 1.65
VIM-204ENST00000478746 ADGRB1O14514 1584 aa25.34■■□□□ 1.65
VIM-204ENST00000478746 TNS1Q9HBL0 1735 aaKnown RBP25.34■■□□□ 1.65
VIM-204ENST00000478746 KIAA0232Q92628 1395 aa25.33■■□□□ 1.65
VIM-204ENST00000478746 ZC3H6P61129 1189 aaKnown RBP25.32■■□□□ 1.64
VIM-204ENST00000478746 EVA1CP58658 441 aa25.31■■□□□ 1.64
VIM-204ENST00000478746 USP35Q9P2H5 1018 aa25.31■■□□□ 1.64
VIM-204ENST00000478746 CRYBG1Q9Y4K1 1723 aa25.3■■□□□ 1.64
VIM-204ENST00000478746 PARD3Q8TEW0 1356 aa25.3■■□□□ 1.64
VIM-204ENST00000478746 PDE3BQ13370 1112 aa25.29■■□□□ 1.64
VIM-204ENST00000478746 DCAF11Q8TEB1 546 aa25.29■■□□□ 1.64
VIM-204ENST00000478746 NUDT16Q96DE0 195 aaKnown RBP25.29■■□□□ 1.64
VIM-204ENST00000478746 NUTM2GQ5VZR2 741 aa25.28■■□□□ 1.64
VIM-204ENST00000478746 NBPF8Q3BBV2 869 aa25.27■■□□□ 1.64
VIM-204ENST00000478746 NBPF14Q5TI25 921 aa25.27■■□□□ 1.64
VIM-204ENST00000478746 BARGINQ6ZT62 677 aa25.26■■□□□ 1.63
VIM-204ENST00000478746 STAC3Q96MF2 364 aa25.24■■□□□ 1.63
VIM-204ENST00000478746 YY1P25490 414 aa25.23■■□□□ 1.63
VIM-204ENST00000478746 LARP1Q6PKG0 1096 aaKnown RBP25.21■■□□□ 1.63
VIM-204ENST00000478746 TCP11L2Q8N4U5 519 aa25.21■■□□□ 1.63
VIM-204ENST00000478746 CDK19Q9BWU1 502 aa25.21■■□□□ 1.63
VIM-204ENST00000478746 ATP7BP35670 1465 aa25.21■■□□□ 1.63
VIM-204ENST00000478746 SSH2Q76I76 1423 aa25.2■■□□□ 1.63
VIM-204ENST00000478746 ITSN1Q15811 1721 aa25.2■■□□□ 1.62
VIM-204ENST00000478746 PHRF1Q9P1Y6 1649 aaKnown RBP25.19■■□□□ 1.62
VIM-204ENST00000478746 ACEP12821 1306 aa25.19■■□□□ 1.62
VIM-204ENST00000478746 ABTB2Q8N961 1025 aa25.18■■□□□ 1.62
VIM-204ENST00000478746 PPP1R1BQ9UD71 204 aaPredicted RBP25.18■■□□□ 1.62
VIM-204ENST00000478746 SPON1Q9HCB6 807 aa25.17■■□□□ 1.62
VIM-204ENST00000478746 CCDC61Q9Y6R9 512 aa25.17■■□□□ 1.62
VIM-204ENST00000478746 THRAP3Q9Y2W1 955 aaKnown RBP25.16■■□□□ 1.62
VIM-204ENST00000478746 POLR3AO14802 1390 aaPredicted RBP25.16■■□□□ 1.62
VIM-204ENST00000478746 PLEKHG3A1L390 1219 aa25.15■■□□□ 1.62
VIM-204ENST00000478746 DCAF8L1A6NGE4 600 aa25.15■■□□□ 1.62
VIM-204ENST00000478746 RREB1Q92766 1687 aa25.15■■□□□ 1.62
VIM-204ENST00000478746 CAMTA1Q9Y6Y1 1673 aa25.15■■□□□ 1.62
VIM-204ENST00000478746 RAB3GAP2Q9H2M9 1393 aa25.15■■□□□ 1.62
VIM-204ENST00000478746 KCNQ2O43526 872 aa25.14■■□□□ 1.62
VIM-204ENST00000478746 NUP188Q5SRE5 1749 aa25.14■■□□□ 1.61
VIM-204ENST00000478746 ARHGEF28Q8N1W1 1705 aaKnown RBP25.12■■□□□ 1.61
VIM-204ENST00000478746 C11orf95C9JLR9 678 aaPredicted RBP25.12■■□□□ 1.61
VIM-204ENST00000478746 CPDO75976 1380 aa25.12■■□□□ 1.61
VIM-204ENST00000478746 NLRP13Q86W25 1043 aa25.11■■□□□ 1.61
VIM-204ENST00000478746 GCP02774 474 aa25.1■■□□□ 1.61
VIM-204ENST00000478746 USP19O94966 1318 aa25.09■■□□□ 1.61
VIM-204ENST00000478746 NRKQ7Z2Y5 1582 aa25.07■■□□□ 1.6
VIM-204ENST00000478746 LMO7Q8WWI1 1683 aa25.06■■□□□ 1.6
VIM-204ENST00000478746 NINLQ9Y2I6 1382 aa25.05■■□□□ 1.6
VIM-204ENST00000478746 PLSCR1O15162 318 aa25.05■■□□□ 1.6
VIM-204ENST00000478746 TOPAZ1Q8N9V7 1692 aa25.04■■□□□ 1.6
VIM-204ENST00000478746 ZBTB7CA1YPR0 619 aa25.04■■□□□ 1.6
VIM-204ENST00000478746 COL5A2P05997 1499 aaPredicted RBP25.02■■□□□ 1.6
VIM-204ENST00000478746 SRPK2P78362 688 aaKnown RBP25.02■■□□□ 1.6
VIM-204ENST00000478746 PARP4Q9UKK3 1724 aaKnown RBP25.02■■□□□ 1.6
VIM-204ENST00000478746 OVOS2A0A0G2JMS6 1433 aa25.02■■□□□ 1.6
VIM-204ENST00000478746 OVOS2A0A0J9YW53 1432 aa25.02■■□□□ 1.6
VIM-204ENST00000478746 CRB1P82279 1406 aa25.02■■□□□ 1.6
VIM-204ENST00000478746 OVOS2Q6IE36 1432 aa25.02■■□□□ 1.6
VIM-204ENST00000478746 DDB1Q16531 1140 aa25.01■■□□□ 1.59
VIM-204ENST00000478746 NLRP6P59044 892 aa24.99■■□□□ 1.59
VIM-204ENST00000478746 PPIP5K1Q6PFW1 1433 aa24.99■■□□□ 1.59
VIM-204ENST00000478746 BCL11BQ9C0K0 894 aaPredicted RBP24.99■■□□□ 1.59
VIM-204ENST00000478746 TOM1L2Q6ZVM7 507 aa24.98■■□□□ 1.59
VIM-204ENST00000478746 BRD4O60885 1362 aaPredicted RBP24.97■■□□□ 1.59
VIM-204ENST00000478746 NBPF1Q3BBV0 1214 aa24.97■■□□□ 1.59
VIM-204ENST00000478746 ANO8Q9HCE9 1232 aaPredicted RBP24.97■■□□□ 1.59
VIM-204ENST00000478746 CABP2Q9NPB3 220 aa24.97■■□□□ 1.59
VIM-204ENST00000478746 AATKQ6ZMQ8 1374 aa24.96■■□□□ 1.59
VIM-204ENST00000478746 PTF1AQ7RTS3 328 aa24.96■■□□□ 1.59
VIM-204ENST00000478746 PEAK1Q9H792 1746 aa24.95■■□□□ 1.59
VIM-204ENST00000478746 SBF2Q86WG5 1849 aa24.94■■□□□ 1.58
VIM-204ENST00000478746 PROM2Q8N271 834 aa24.94■■□□□ 1.58
VIM-204ENST00000478746 CABP1Q9NZU7 370 aa24.94■■□□□ 1.58
VIM-204ENST00000478746 PDGFDQ9GZP0 370 aaPredicted RBP24.93■■□□□ 1.58
VIM-204ENST00000478746 RGPD3A6NKT7 1758 aaPredicted RBP24.93■■□□□ 1.58
VIM-204ENST00000478746 RGPD4Q7Z3J3 1758 aa24.93■■□□□ 1.58
VIM-204ENST00000478746 CENPJQ9HC77 1338 aaPredicted RBP24.92■■□□□ 1.58
VIM-204ENST00000478746 ZBTB7AO95365 584 aa24.92■■□□□ 1.58
VIM-204ENST00000478746 MARCH10Q8NA82 808 aaPredicted RBP24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms