RNA–Protein interactions for RNA: ENST00000478582.5

CCM2-211, Transcript of CCM2 scaffold protein, humanhuman

TSL 3

Gene CCM2, Length 937 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-211ENST00000478582 MARF1Q9Y4F3 1742 aaKnown RBP37.53■■■■□ 3.6
CCM2-211ENST00000478582 LMOD2Q6P5Q4 547 aa37.53■■■■□ 3.6
CCM2-211ENST00000478582 USP21Q9UK80 565 aa37.53■■■■□ 3.6
CCM2-211ENST00000478582 POLR3AO14802 1390 aaPredicted RBP37.52■■■■□ 3.6
CCM2-211ENST00000478582 TRPM3Q9HCF6 1732 aaPredicted RBP37.5■■■■□ 3.59
CCM2-211ENST00000478582 CABP1Q9NZU7 370 aa37.49■■■■□ 3.59
CCM2-211ENST00000478582 RBM6P78332 1123 aaKnown RBP37.48■■■■□ 3.59
CCM2-211ENST00000478582 ACEP12821 1306 aa37.47■■■■□ 3.59
CCM2-211ENST00000478582 CABLES1Q8TDN4 633 aa37.47■■■■□ 3.59
CCM2-211ENST00000478582 CDK12Q9NYV4 1490 aaPredicted RBP37.46■■■■□ 3.59
CCM2-211ENST00000478582 HAP1P54257 671 aaPredicted RBP37.46■■■■□ 3.59
CCM2-211ENST00000478582 CDCA8Q53HL2 280 aa37.45■■■■□ 3.59
CCM2-211ENST00000478582 TRPC5Q9UL62 973 aaPredicted RBP37.45■■■■□ 3.59
CCM2-211ENST00000478582 ZEB1P37275 1124 aaPredicted RBP37.43■■■■□ 3.58
CCM2-211ENST00000478582 ALS2Q96Q42 1657 aa37.43■■■■□ 3.58
CCM2-211ENST00000478582 PLEKHG5O94827 1062 aa37.42■■■■□ 3.58
CCM2-211ENST00000478582 PAK3O75914 559 aaPredicted RBP37.41■■■■□ 3.58
CCM2-211ENST00000478582 BCL9LQ86UU0 1499 aa37.4■■■■□ 3.58
CCM2-211ENST00000478582 ATRNO75882 1429 aa37.38■■■■□ 3.57
CCM2-211ENST00000478582 ABCA3Q99758 1704 aa37.37■■■■□ 3.57
CCM2-211ENST00000478582 NINLQ9Y2I6 1382 aa37.37■■■■□ 3.57
CCM2-211ENST00000478582 ZNF692Q9BU19 519 aaPredicted RBP37.36■■■■□ 3.57
CCM2-211ENST00000478582 SLIT2O94813 1529 aa37.36■■■■□ 3.57
CCM2-211ENST00000478582 BRD4O60885 1362 aaPredicted RBP37.35■■■■□ 3.57
CCM2-211ENST00000478582 CPSF1Q10570 1443 aaKnown RBP37.35■■■■□ 3.57
CCM2-211ENST00000478582 SLC12A5Q9H2X9 1139 aa37.34■■■■□ 3.57
CCM2-211ENST00000478582 TMC1Q8TDI8 760 aa37.33■■■■□ 3.57
CCM2-211ENST00000478582 UNC5CLQ8IV45 518 aa37.32■■■■□ 3.56
CCM2-211ENST00000478582 RGS12O14924 1447 aa37.31■■■■□ 3.56
CCM2-211ENST00000478582 USP6P35125 1406 aa37.31■■■■□ 3.56
CCM2-211ENST00000478582 TNKS1BP1Q9C0C2 1729 aaKnown RBP37.3■■■■□ 3.56
CCM2-211ENST00000478582 CD163L1Q9NR16 1453 aa37.29■■■■□ 3.56
CCM2-211ENST00000478582 AKAP12Q02952 1782 aa37.27■■■■□ 3.56
CCM2-211ENST00000478582 FAM83GA6ND36 823 aa37.27■■■■□ 3.56
CCM2-211ENST00000478582 GJD4Q96KN9 370 aaPredicted RBP37.27■■■■□ 3.56
CCM2-211ENST00000478582 SSH2Q76I76 1423 aa37.27■■■■□ 3.56
CCM2-211ENST00000478582 TERF2IPQ9NYB0 399 aa37.26■■■■□ 3.56
CCM2-211ENST00000478582 HDGFL2Q7Z4V5 671 aaPredicted RBP37.25■■■■□ 3.55
CCM2-211ENST00000478582 CRYBG1Q9Y4K1 1723 aa37.24■■■■□ 3.55
CCM2-211ENST00000478582 C11orf95C9JLR9 678 aaPredicted RBP37.23■■■■□ 3.55
CCM2-211ENST00000478582 KTN1Q86UP2 1357 aaKnown RBP37.23■■■■□ 3.55
CCM2-211ENST00000478582 NWD2Q9ULI1 1742 aa37.22■■■■□ 3.55
CCM2-211ENST00000478582 PLCH1Q4KWH8 1693 aa37.22■■■■□ 3.55
CCM2-211ENST00000478582 A0A1W2PP64 1363 aa37.2■■■■□ 3.55
CCM2-211ENST00000478582 ABTB2Q8N961 1025 aa37.2■■■■□ 3.55
CCM2-211ENST00000478582 NUTM2GQ5VZR2 741 aa37.19■■■■□ 3.54
CCM2-211ENST00000478582 MON2Q7Z3U7 1717 aa37.19■■■■□ 3.54
CCM2-211ENST00000478582 ANKRD36BQ8N2N9 1353 aa37.18■■■■□ 3.54
CCM2-211ENST00000478582 UPF1Q92900 1129 aaKnown RBP eCLIP37.18■■■■□ 3.54
CCM2-211ENST00000478582 TTC21BQ7Z4L5 1316 aa37.17■■■■□ 3.54
CCM2-211ENST00000478582 VPS72Q15906 364 aa37.17■■■■□ 3.54
CCM2-211ENST00000478582 TTC21AQ8NDW8 1320 aa37.16■■■■□ 3.54
CCM2-211ENST00000478582 MYOM1P52179 1685 aa37.15■■■■□ 3.54
CCM2-211ENST00000478582 COL14A1Q05707 1796 aaKnown RBP37.15■■■■□ 3.54
CCM2-211ENST00000478582 NRKQ7Z2Y5 1582 aa37.15■■■■□ 3.54
CCM2-211ENST00000478582 EDC4Q6P2E9 1401 aaKnown RBP37.14■■■■□ 3.54
CCM2-211ENST00000478582 BTG4Q9NY30 223 aa37.14■■■■□ 3.54
CCM2-211ENST00000478582 NLRP13Q86W25 1043 aa37.13■■■■□ 3.53
CCM2-211ENST00000478582 PHRF1Q9P1Y6 1649 aaKnown RBP37.13■■■■□ 3.53
CCM2-211ENST00000478582 GLI3P10071 1580 aa37.12■■■■□ 3.53
CCM2-211ENST00000478582 KIF7Q2M1P5 1343 aa37.12■■■■□ 3.53
CCM2-211ENST00000478582 POLR3GLQ9BT43 218 aa37.12■■■■□ 3.53
CCM2-211ENST00000478582 PRDM11Q9NQV5 511 aa37.12■■■■□ 3.53
CCM2-211ENST00000478582 CCDC9Q9Y3X0 531 aaKnown RBP37.09■■■■□ 3.53
CCM2-211ENST00000478582 USP19O94966 1318 aa37.09■■■■□ 3.53
CCM2-211ENST00000478582 KIAA0232Q92628 1395 aa37.08■■■■□ 3.53
CCM2-211ENST00000478582 NRAPQ86VF7 1730 aa37.07■■■■□ 3.53
CCM2-211ENST00000478582 ZC3H6P61129 1189 aaKnown RBP37.07■■■■□ 3.52
CCM2-211ENST00000478582 PIK3C2AO00443 1686 aa37.05■■■■□ 3.52
CCM2-211ENST00000478582 NLRP6P59044 892 aa37.04■■■■□ 3.52
CCM2-211ENST00000478582 SUGP2Q8IX01 1082 aaKnown RBP eCLIP37.04■■■■□ 3.52
CCM2-211ENST00000478582 CCDC7Q96M83 1385 aa37.03■■■■□ 3.52
CCM2-211ENST00000478582 ONECUT3O60422 494 aaPredicted RBP37.02■■■■□ 3.52
CCM2-211ENST00000478582 GCP02774 474 aa37.02■■■■□ 3.52
CCM2-211ENST00000478582 CHRNA2Q15822 529 aa37.02■■■■□ 3.52
CCM2-211ENST00000478582 USP31Q70CQ4 1352 aa37.02■■■■□ 3.52
CCM2-211ENST00000478582 CARD14Q9BXL6 1004 aa37.01■■■■□ 3.52
CCM2-211ENST00000478582 WASHC2AQ641Q2 1341 aa37.01■■■■□ 3.52
CCM2-211ENST00000478582 CPDO75976 1380 aa36.99■■■■□ 3.51
CCM2-211ENST00000478582 NME9Q86XW9 330 aa36.98■■■■□ 3.51
CCM2-211ENST00000478582 SEPT12Q8IYM1 358 aa36.98■■■■□ 3.51
CCM2-211ENST00000478582 PANK3Q9H999 370 aa36.95■■■■□ 3.51
CCM2-211ENST00000478582 USP54Q70EL1 1684 aa36.95■■■■□ 3.51
CCM2-211ENST00000478582 SLIT3O75094 1523 aa36.95■■■■□ 3.5
CCM2-211ENST00000478582 SPATA31A5Q5VU36 1347 aa36.94■■■■□ 3.5
CCM2-211ENST00000478582 SPATA31A7Q8IWB4 1347 aa36.94■■■■□ 3.5
CCM2-211ENST00000478582 NSD3Q9BZ95 1437 aa36.93■■■■□ 3.5
CCM2-211ENST00000478582 ZRANB1Q9UGI0 708 aa36.92■■■■□ 3.5
CCM2-211ENST00000478582 BRWD3Q6RI45 1802 aa36.91■■■■□ 3.5
CCM2-211ENST00000478582 FYB1O15117 783 aa36.9■■■■□ 3.5
CCM2-211ENST00000478582 FAM98CQ17RN3 349 aaKnown RBP36.9■■■■□ 3.5
CCM2-211ENST00000478582 STRN4Q9NRL3 753 aa36.9■■■■□ 3.5
CCM2-211ENST00000478582 OVOS2A0A0J9YW53 1432 aa36.89■■■■□ 3.5
CCM2-211ENST00000478582 OVOS2Q6IE36 1432 aa36.89■■■■□ 3.5
CCM2-211ENST00000478582 KCNH5Q8NCM2 988 aa36.89■■■■□ 3.5
CCM2-211ENST00000478582 EVA1CP58658 441 aa36.88■■■■□ 3.49
CCM2-211ENST00000478582 CAMTA1Q9Y6Y1 1673 aa36.88■■■■□ 3.49
CCM2-211ENST00000478582 LMO7Q8WWI1 1683 aa36.86■■■■□ 3.49
CCM2-211ENST00000478582 SPATA31A1Q5TZJ5 1347 aa36.85■■■■□ 3.49
CCM2-211ENST00000478582 A0A0G2JS52 829 aa36.85■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms