RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 ALS2Q96Q42 1657 aa22■■□□□ 1.11
HMGA1-206ENST00000478214 USP47Q96K76 1375 aa21.99■■□□□ 1.11
HMGA1-206ENST00000478214 ATAD2Q6PL18 1390 aa21.99■■□□□ 1.11
HMGA1-206ENST00000478214 USP21Q9UK80 565 aa21.98■■□□□ 1.11
HMGA1-206ENST00000478214 NUTM2GQ5VZR2 741 aa21.97■■□□□ 1.11
HMGA1-206ENST00000478214 QTRT2Q9H974 415 aaKnown RBP21.97■■□□□ 1.11
HMGA1-206ENST00000478214 RXRBP28702 533 aa21.95■■□□□ 1.1
HMGA1-206ENST00000478214 USP6P35125 1406 aa21.95■■□□□ 1.1
HMGA1-206ENST00000478214 ABTB2Q8N961 1025 aa21.94■■□□□ 1.1
HMGA1-206ENST00000478214 ABCA3Q99758 1704 aa21.93■■□□□ 1.1
HMGA1-206ENST00000478214 MARF1Q9Y4F3 1742 aaKnown RBP21.92■■□□□ 1.1
HMGA1-206ENST00000478214 BCL9LQ86UU0 1499 aa21.92■■□□□ 1.1
HMGA1-206ENST00000478214 BRD4O60885 1362 aaPredicted RBP21.92■■□□□ 1.1
HMGA1-206ENST00000478214 TMC1Q8TDI8 760 aa21.92■■□□□ 1.1
HMGA1-206ENST00000478214 FAM83GA6ND36 823 aa21.91■■□□□ 1.1
HMGA1-206ENST00000478214 SLC24A1O60721 1099 aa21.91■■□□□ 1.1
HMGA1-206ENST00000478214 PUS7Q96PZ0 661 aaKnown RBP21.91■■□□□ 1.1
HMGA1-206ENST00000478214 ZNF692Q9BU19 519 aaPredicted RBP21.91■■□□□ 1.1
HMGA1-206ENST00000478214 TRPC5Q9UL62 973 aaPredicted RBP21.91■■□□□ 1.1
HMGA1-206ENST00000478214 SLIT2O94813 1529 aa21.9■■□□□ 1.1
HMGA1-206ENST00000478214 CPSF1Q10570 1443 aaKnown RBP21.9■■□□□ 1.1
HMGA1-206ENST00000478214 SSH2Q76I76 1423 aa21.9■■□□□ 1.1
HMGA1-206ENST00000478214 RBM6P78332 1123 aaKnown RBP21.9■■□□□ 1.1
HMGA1-206ENST00000478214 SLC12A5Q9H2X9 1139 aa21.9■■□□□ 1.1
HMGA1-206ENST00000478214 UNC5CLQ8IV45 518 aa21.89■■□□□ 1.09
HMGA1-206ENST00000478214 ATRNO75882 1429 aa21.89■■□□□ 1.09
HMGA1-206ENST00000478214 NLRP13Q86W25 1043 aa21.88■■□□□ 1.09
HMGA1-206ENST00000478214 KTN1Q86UP2 1357 aaKnown RBP21.87■■□□□ 1.09
HMGA1-206ENST00000478214 TTC21BQ7Z4L5 1316 aa21.87■■□□□ 1.09
HMGA1-206ENST00000478214 CRYBG1Q9Y4K1 1723 aa21.87■■□□□ 1.09
HMGA1-206ENST00000478214 TMF1P82094 1093 aa21.87■■□□□ 1.09
HMGA1-206ENST00000478214 USP19O94966 1318 aa21.86■■□□□ 1.09
HMGA1-206ENST00000478214 CD163L1Q9NR16 1453 aa21.86■■□□□ 1.09
HMGA1-206ENST00000478214 NLRP6P59044 892 aa21.86■■□□□ 1.09
HMGA1-206ENST00000478214 ZC3H6P61129 1189 aaKnown RBP21.86■■□□□ 1.09
HMGA1-206ENST00000478214 PRDM11Q9NQV5 511 aa21.85■■□□□ 1.09
HMGA1-206ENST00000478214 KIAA0232Q92628 1395 aa21.85■■□□□ 1.09
HMGA1-206ENST00000478214 GCP02774 474 aa21.83■■□□□ 1.09
HMGA1-206ENST00000478214 HDGFL2Q7Z4V5 671 aaPredicted RBP21.83■■□□□ 1.09
HMGA1-206ENST00000478214 BTG4Q9NY30 223 aa21.83■■□□□ 1.09
HMGA1-206ENST00000478214 AKAP12Q02952 1782 aa21.83■■□□□ 1.09
HMGA1-206ENST00000478214 PHRF1Q9P1Y6 1649 aaKnown RBP21.83■■□□□ 1.08
HMGA1-206ENST00000478214 CDK12Q9NYV4 1490 aaPredicted RBP21.83■■□□□ 1.08
HMGA1-206ENST00000478214 TTC21AQ8NDW8 1320 aa21.82■■□□□ 1.08
HMGA1-206ENST00000478214 CHRNA2Q15822 529 aa21.82■■□□□ 1.08
HMGA1-206ENST00000478214 GJD4Q96KN9 370 aaPredicted RBP21.82■■□□□ 1.08
HMGA1-206ENST00000478214 TERF2IPQ9NYB0 399 aa21.82■■□□□ 1.08
HMGA1-206ENST00000478214 RGS12O14924 1447 aa21.81■■□□□ 1.08
HMGA1-206ENST00000478214 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.81■■□□□ 1.08
HMGA1-206ENST00000478214 A0A1W2PP64 1363 aa21.81■■□□□ 1.08
HMGA1-206ENST00000478214 PLCH1Q4KWH8 1693 aa21.81■■□□□ 1.08
HMGA1-206ENST00000478214 PIK3C2AO00443 1686 aa21.8■■□□□ 1.08
HMGA1-206ENST00000478214 NRKQ7Z2Y5 1582 aa21.8■■□□□ 1.08
HMGA1-206ENST00000478214 NINLQ9Y2I6 1382 aa21.8■■□□□ 1.08
HMGA1-206ENST00000478214 EIF4G2P78344 907 aaKnown RBP eCLIP21.8■■□□□ 1.08
HMGA1-206ENST00000478214 VPS72Q15906 364 aa21.8■■□□□ 1.08
HMGA1-206ENST00000478214 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.8■■□□□ 1.08
HMGA1-206ENST00000478214 COL14A1Q05707 1796 aaKnown RBP21.79■■□□□ 1.08
HMGA1-206ENST00000478214 HSPA5P11021 654 aaKnown RBP21.79■■□□□ 1.08
HMGA1-206ENST00000478214 NWD2Q9ULI1 1742 aa21.78■■□□□ 1.08
HMGA1-206ENST00000478214 CDCA8Q53HL2 280 aa21.78■■□□□ 1.08
HMGA1-206ENST00000478214 ZRANB1Q9UGI0 708 aa21.78■■□□□ 1.08
HMGA1-206ENST00000478214 MON2Q7Z3U7 1717 aa21.77■■□□□ 1.08
HMGA1-206ENST00000478214 CPDO75976 1380 aa21.77■■□□□ 1.08
HMGA1-206ENST00000478214 NME9Q86XW9 330 aa21.77■■□□□ 1.08
HMGA1-206ENST00000478214 CCDC9Q9Y3X0 531 aaKnown RBP21.77■■□□□ 1.08
HMGA1-206ENST00000478214 EDC4Q6P2E9 1401 aaKnown RBP21.77■■□□□ 1.08
HMGA1-206ENST00000478214 SLIT3O75094 1523 aa21.76■■□□□ 1.07
HMGA1-206ENST00000478214 GLI3P10071 1580 aa21.75■■□□□ 1.07
HMGA1-206ENST00000478214 ZBTB7CA1YPR0 619 aa21.74■■□□□ 1.07
HMGA1-206ENST00000478214 SOX12O15370 315 aa21.74■■□□□ 1.07
HMGA1-206ENST00000478214 NRAPQ86VF7 1730 aa21.74■■□□□ 1.07
HMGA1-206ENST00000478214 ANKRD36BQ8N2N9 1353 aa21.74■■□□□ 1.07
HMGA1-206ENST00000478214 STRN4Q9NRL3 753 aa21.73■■□□□ 1.07
HMGA1-206ENST00000478214 USP31Q70CQ4 1352 aa21.73■■□□□ 1.07
HMGA1-206ENST00000478214 KCNH5Q8NCM2 988 aa21.72■■□□□ 1.07
HMGA1-206ENST00000478214 CAMTA1Q9Y6Y1 1673 aa21.7■■□□□ 1.06
HMGA1-206ENST00000478214 EVA1CP58658 441 aa21.69■■□□□ 1.06
HMGA1-206ENST00000478214 ARHGEF25Q86VW2 580 aa21.69■■□□□ 1.06
HMGA1-206ENST00000478214 POLR3GLQ9BT43 218 aa21.69■■□□□ 1.06
HMGA1-206ENST00000478214 SPATA31A5Q5VU36 1347 aa21.69■■□□□ 1.06
HMGA1-206ENST00000478214 SPATA31A7Q8IWB4 1347 aa21.69■■□□□ 1.06
HMGA1-206ENST00000478214 SEPT12Q8IYM1 358 aa21.68■■□□□ 1.06
HMGA1-206ENST00000478214 AATKQ6ZMQ8 1374 aa21.68■■□□□ 1.06
HMGA1-206ENST00000478214 LMO7Q8WWI1 1683 aa21.67■■□□□ 1.06
HMGA1-206ENST00000478214 ONECUT3O60422 494 aaPredicted RBP21.67■■□□□ 1.06
HMGA1-206ENST00000478214 FAM98CQ17RN3 349 aaKnown RBP21.67■■□□□ 1.06
HMGA1-206ENST00000478214 NFAT5O94916 1531 aa21.66■■□□□ 1.06
HMGA1-206ENST00000478214 LARP1Q6PKG0 1096 aaKnown RBP21.66■■□□□ 1.06
HMGA1-206ENST00000478214 OVOS2A0A0J9YW53 1432 aa21.65■■□□□ 1.06
HMGA1-206ENST00000478214 OVOS2Q6IE36 1432 aa21.65■■□□□ 1.06
HMGA1-206ENST00000478214 SPATA31A1Q5TZJ5 1347 aa21.65■■□□□ 1.06
HMGA1-206ENST00000478214 UPF1Q92900 1129 aaKnown RBP eCLIP21.65■■□□□ 1.061e-22■■■□□ 19.1
HMGA1-206ENST00000478214 AXIN2Q9Y2T1 843 aa21.65■■□□□ 1.06
HMGA1-206ENST00000478214 C11orf95C9JLR9 678 aaPredicted RBP21.64■■□□□ 1.05
HMGA1-206ENST00000478214 CARD14Q9BXL6 1004 aa21.64■■□□□ 1.05
HMGA1-206ENST00000478214 COL5A2P05997 1499 aaPredicted RBP21.64■■□□□ 1.05
HMGA1-206ENST00000478214 MYOM1P52179 1685 aa21.63■■□□□ 1.05
HMGA1-206ENST00000478214 USP54Q70EL1 1684 aa21.63■■□□□ 1.05
HMGA1-206ENST00000478214 A0A0G2JS52 829 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms