RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 TRPM1Q7Z4N2 1603 aa23.26■■□□□ 1.31
COL1A1-205ENST00000476387 PAK3O75914 559 aaPredicted RBP23.25■■□□□ 1.31
COL1A1-205ENST00000476387 CCDC125Q86Z20 511 aa23.25■■□□□ 1.31
COL1A1-205ENST00000476387 CCDC61Q9Y6R9 512 aa23.25■■□□□ 1.31
COL1A1-205ENST00000476387 TOPAZ1Q8N9V7 1692 aa23.25■■□□□ 1.31
COL1A1-205ENST00000476387 CENPJQ9HC77 1338 aaPredicted RBP23.24■■□□□ 1.31
COL1A1-205ENST00000476387 PLEKHG3A1L390 1219 aa23.23■■□□□ 1.31
COL1A1-205ENST00000476387 ONECUT3O60422 494 aaPredicted RBP23.23■■□□□ 1.31
COL1A1-205ENST00000476387 CRYBG1Q9Y4K1 1723 aa23.22■■□□□ 1.31
COL1A1-205ENST00000476387 COL14A1Q05707 1796 aaKnown RBP23.22■■□□□ 1.31
COL1A1-205ENST00000476387 CCDC9Q9Y3X0 531 aaKnown RBP23.21■■□□□ 1.31
COL1A1-205ENST00000476387 ACEP12821 1306 aa23.21■■□□□ 1.31
COL1A1-205ENST00000476387 NRAPQ86VF7 1730 aa23.2■■□□□ 1.3
COL1A1-205ENST00000476387 NBPF8Q3BBV2 869 aa23.2■■□□□ 1.3
COL1A1-205ENST00000476387 SEPT12Q8IYM1 358 aa23.2■■□□□ 1.3
COL1A1-205ENST00000476387 BTG4Q9NY30 223 aa23.2■■□□□ 1.3
COL1A1-205ENST00000476387 TONSLQ96HA7 1378 aa23.19■■□□□ 1.3
COL1A1-205ENST00000476387 QRICH2Q9H0J4 1663 aa23.19■■□□□ 1.3
COL1A1-205ENST00000476387 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
COL1A1-205ENST00000476387 PRDM11Q9NQV5 511 aa23.17■■□□□ 1.3
COL1A1-205ENST00000476387 BRWD3Q6RI45 1802 aa23.17■■□□□ 1.3
COL1A1-205ENST00000476387 BLMP54132 1417 aaPredicted RBP23.15■■□□□ 1.3
COL1A1-205ENST00000476387 PPIP5K1Q6PFW1 1433 aa23.15■■□□□ 1.3
COL1A1-205ENST00000476387 BRD4O60885 1362 aaPredicted RBP23.14■■□□□ 1.29
COL1A1-205ENST00000476387 ROCK2O75116 1388 aaKnown RBP23.14■■□□□ 1.29
COL1A1-205ENST00000476387 PHRF1Q9P1Y6 1649 aaKnown RBP23.13■■□□□ 1.29
COL1A1-205ENST00000476387 KIAA0232Q92628 1395 aa23.13■■□□□ 1.29
COL1A1-205ENST00000476387 SPATA31A5Q5VU36 1347 aa23.12■■□□□ 1.29
COL1A1-205ENST00000476387 SPATA31A7Q8IWB4 1347 aa23.12■■□□□ 1.29
COL1A1-205ENST00000476387 KRT27Q7Z3Y8 459 aa23.12■■□□□ 1.29
COL1A1-205ENST00000476387 CABP2Q9NPB3 220 aa23.12■■□□□ 1.29
COL1A1-205ENST00000476387 FAM98CQ17RN3 349 aaKnown RBP23.1■■□□□ 1.29
COL1A1-205ENST00000476387 NUTM2GQ5VZR2 741 aa23.1■■□□□ 1.29
COL1A1-205ENST00000476387 ABTB2Q8N961 1025 aa23.1■■□□□ 1.29
COL1A1-205ENST00000476387 USP19O94966 1318 aa23.09■■□□□ 1.29
COL1A1-205ENST00000476387 EVC2Q86UK5 1308 aa23.09■■□□□ 1.29
COL1A1-205ENST00000476387 A0A0G2JS52 829 aa23.08■■□□□ 1.29
COL1A1-205ENST00000476387 MYT1Q01538 1121 aa23.08■■□□□ 1.29
COL1A1-205ENST00000476387 CPDO75976 1380 aa23.07■■□□□ 1.28
COL1A1-205ENST00000476387 ZC3H6P61129 1189 aaKnown RBP23.07■■□□□ 1.28
COL1A1-205ENST00000476387 PCGF6Q9BYE7 350 aa23.07■■□□□ 1.28
COL1A1-205ENST00000476387 NRKQ7Z2Y5 1582 aa23.06■■□□□ 1.28
COL1A1-205ENST00000476387 SF3B2Q13435 895 aaKnown RBP23.06■■□□□ 1.28
COL1A1-205ENST00000476387 CHRNA2Q15822 529 aa23.06■■□□□ 1.28
COL1A1-205ENST00000476387 NLRP13Q86W25 1043 aa23.06■■□□□ 1.28
COL1A1-205ENST00000476387 CABP1Q9NZU7 370 aa23.06■■□□□ 1.28
COL1A1-205ENST00000476387 ZRANB1Q9UGI0 708 aa23.06■■□□□ 1.28
COL1A1-205ENST00000476387 USP6P35125 1406 aa23.05■■□□□ 1.28
COL1A1-205ENST00000476387 SPATA31A1Q5TZJ5 1347 aa23.05■■□□□ 1.28
COL1A1-205ENST00000476387 THSD7AQ9UPZ6 1657 aa23.04■■□□□ 1.28
COL1A1-205ENST00000476387 GCP02774 474 aa23.02■■□□□ 1.28
COL1A1-205ENST00000476387 STRN4Q9NRL3 753 aa23.01■■□□□ 1.27
COL1A1-205ENST00000476387 SSH2Q76I76 1423 aa23■■□□□ 1.27
COL1A1-205ENST00000476387 SRCAPQ6ZRS2 3230 aa23■■□□□ 1.27
COL1A1-205ENST00000476387 SBNO2Q9Y2G9 1366 aa23■■□□□ 1.27
COL1A1-205ENST00000476387 LMO7Q8WWI1 1683 aa23■■□□□ 1.27
COL1A1-205ENST00000476387 EVA1CP58658 441 aa22.99■■□□□ 1.27
COL1A1-205ENST00000476387 DEFB132Q7Z7B7 95 aa22.99■■□□□ 1.27
COL1A1-205ENST00000476387 CAMTA1Q9Y6Y1 1673 aa22.99■■□□□ 1.27
COL1A1-205ENST00000476387 ZNF692Q9BU19 519 aaPredicted RBP22.98■■□□□ 1.27
COL1A1-205ENST00000476387 CARD11Q9BXL7 1154 aa22.98■■□□□ 1.27
COL1A1-205ENST00000476387 NLRP6P59044 892 aa22.97■■□□□ 1.27
COL1A1-205ENST00000476387 BARGINQ6ZT62 677 aa22.97■■□□□ 1.27
COL1A1-205ENST00000476387 SLIT3O75094 1523 aa22.97■■□□□ 1.27
COL1A1-205ENST00000476387 CLSPNQ9HAW4 1339 aa22.96■■□□□ 1.27
COL1A1-205ENST00000476387 BAG6P46379 1132 aa22.95■■□□□ 1.26
COL1A1-205ENST00000476387 LARP1Q6PKG0 1096 aaKnown RBP22.94■■□□□ 1.26
COL1A1-205ENST00000476387 PIK3C2AO00443 1686 aa22.93■■□□□ 1.26
COL1A1-205ENST00000476387 AATKQ6ZMQ8 1374 aa22.93■■□□□ 1.26
COL1A1-205ENST00000476387 THRAP3Q9Y2W1 955 aaKnown RBP22.93■■□□□ 1.26
COL1A1-205ENST00000476387 COL5A2P05997 1499 aaPredicted RBP22.92■■□□□ 1.26
COL1A1-205ENST00000476387 CPSF1Q10570 1443 aaKnown RBP22.92■■□□□ 1.26
COL1A1-205ENST00000476387 AKAP12Q02952 1782 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 TTC21BQ7Z4L5 1316 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 TTC21AQ8NDW8 1320 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 RGPD1P0DJD0 1748 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 TCP11L2Q8N4U5 519 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 USP35Q9P2H5 1018 aa22.92■■□□□ 1.26
COL1A1-205ENST00000476387 FAM182BQ5T319 152 aa22.91■■□□□ 1.26
COL1A1-205ENST00000476387 FAM196AQ6ZSG2 479 aa22.9■■□□□ 1.26
COL1A1-205ENST00000476387 DISP2A7MBM2 1401 aa22.9■■□□□ 1.26
COL1A1-205ENST00000476387 KTN1Q86UP2 1357 aaKnown RBP22.89■■□□□ 1.25
COL1A1-205ENST00000476387 KCNH5Q8NCM2 988 aa22.88■■□□□ 1.25
COL1A1-205ENST00000476387 CRB1P82279 1406 aa22.88■■□□□ 1.25
COL1A1-205ENST00000476387 PDE3BQ13370 1112 aa22.86■■□□□ 1.25
COL1A1-205ENST00000476387 TNS1Q9HBL0 1735 aaKnown RBP22.85■■□□□ 1.25
COL1A1-205ENST00000476387 CCER1Q8TC90 406 aaPredicted RBP22.85■■□□□ 1.25
COL1A1-205ENST00000476387 TIMELESSQ9UNS1 1208 aa22.85■■□□□ 1.25
COL1A1-205ENST00000476387 COL18A1P39060 1754 aa22.85■■□□□ 1.25
COL1A1-205ENST00000476387 ZBTB7CA1YPR0 619 aa22.84■■□□□ 1.25
COL1A1-205ENST00000476387 ARHGEF25Q86VW2 580 aa22.84■■□□□ 1.25
COL1A1-205ENST00000476387 PUS7Q96PZ0 661 aaKnown RBP22.84■■□□□ 1.25
COL1A1-205ENST00000476387 MON2Q7Z3U7 1717 aa22.84■■□□□ 1.25
COL1A1-205ENST00000476387 EN1Q05925 392 aaPredicted RBP22.83■■□□□ 1.25
COL1A1-205ENST00000476387 PARP4Q9UKK3 1724 aaKnown RBP22.82■■□□□ 1.24
COL1A1-205ENST00000476387 CD163L1Q9NR16 1453 aa22.81■■□□□ 1.24
COL1A1-205ENST00000476387 C11orf95C9JLR9 678 aaPredicted RBP22.81■■□□□ 1.24
COL1A1-205ENST00000476387 TRIM37O94972 964 aa22.81■■□□□ 1.24
COL1A1-205ENST00000476387 NFAT5O94916 1531 aa22.81■■□□□ 1.24
COL1A1-205ENST00000476387 WDR17Q8IZU2 1322 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms