RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	CCER1	Q8TC90	406 aa	Predicted RBP	34.03	■■■■□ 3.04
CPNE1-223	ENST00000475146	SBNO2	Q9Y2G9	1366 aa		34.02	■■■■□ 3.04
CPNE1-223	ENST00000475146	CABP1	Q9NZU7	370 aa		34.02	■■■■□ 3.04
CPNE1-223	ENST00000475146	TRPC5	Q9UL62	973 aa	Predicted RBP	34.01	■■■■□ 3.03
CPNE1-223	ENST00000475146	RBM6	P78332	1123 aa	Known RBP	33.99	■■■■□ 3.03
CPNE1-223	ENST00000475146	TIMELESS	Q9UNS1	1208 aa		33.98	■■■■□ 3.03
CPNE1-223	ENST00000475146	BCL9L	Q86UU0	1499 aa		33.97	■■■■□ 3.03
CPNE1-223	ENST00000475146	ATAD2	Q6PL18	1390 aa		33.97	■■■■□ 3.03
CPNE1-223	ENST00000475146	ATRN	O75882	1429 aa		33.96	■■■■□ 3.03
CPNE1-223	ENST00000475146	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.95	■■■■□ 3.03
CPNE1-223	ENST00000475146	NUTM2G	Q5VZR2	741 aa		33.95	■■■■□ 3.03
CPNE1-223	ENST00000475146	SLIT2	O94813	1529 aa		33.94	■■■■□ 3.02
CPNE1-223	ENST00000475146	CRYBG1	Q9Y4K1	1723 aa		33.92	■■■■□ 3.02
CPNE1-223	ENST00000475146	USP6	P35125	1406 aa		33.91	■■■■□ 3.02
CPNE1-223	ENST00000475146	UNC5CL	Q8IV45	518 aa		33.91	■■■■□ 3.02
CPNE1-223	ENST00000475146	ABTB2	Q8N961	1025 aa		33.91	■■■■□ 3.02
CPNE1-223	ENST00000475146	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.9	■■■■□ 3.02
CPNE1-223	ENST00000475146	PLCH1	Q4KWH8	1693 aa		33.9	■■■■□ 3.02
CPNE1-223	ENST00000475146	RGS12	O14924	1447 aa		33.89	■■■■□ 3.02
CPNE1-223	ENST00000475146	BRD4	O60885	1362 aa	Predicted RBP	33.89	■■■■□ 3.02
CPNE1-223	ENST00000475146	ST20-MTHFS	A0A0A6YYL1	179 aa		33.89	■■■■□ 3.02
CPNE1-223	ENST00000475146	FAM83G	A6ND36	823 aa		33.88	■■■■□ 3.01
CPNE1-223	ENST00000475146	USP47	Q96K76	1375 aa		33.86	■■■■□ 3.01
CPNE1-223	ENST00000475146	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.86	■■■■□ 3.01
CPNE1-223	ENST00000475146	NWD2	Q9ULI1	1742 aa		33.85	■■■■□ 3.01
CPNE1-223	ENST00000475146	GJD4	Q96KN9	370 aa	Predicted RBP	33.83	■■■■□ 3.01
CPNE1-223	ENST00000475146	TESK2	Q96S53	571 aa		33.83	■■■■□ 3.01
CPNE1-223	ENST00000475146	PRDM11	Q9NQV5	511 aa		33.83	■■■■□ 3.01
CPNE1-223	ENST00000475146	COL14A1	Q05707	1796 aa	Known RBP	33.83	■■■■□ 3.01
CPNE1-223	ENST00000475146	NLRP13	Q86W25	1043 aa		33.82	■■■■□ 3
CPNE1-223	ENST00000475146	ZNF692	Q9BU19	519 aa	Predicted RBP	33.82	■■■■□ 3
CPNE1-223	ENST00000475146	AKAP12	Q02952	1782 aa		33.81	■■■■□ 3
CPNE1-223	ENST00000475146	TMC1	Q8TDI8	760 aa		33.81	■■■■□ 3
CPNE1-223	ENST00000475146	KIAA0232	Q92628	1395 aa		33.8	■■■■□ 3
CPNE1-223	ENST00000475146	USP19	O94966	1318 aa		33.79	■■■■□ 3
CPNE1-223	ENST00000475146	SSH2	Q76I76	1423 aa		33.79	■■■■□ 3
CPNE1-223	ENST00000475146	ZC3H6	P61129	1189 aa	Known RBP	33.79	■■■■□ 3
CPNE1-223	ENST00000475146	BTG4	Q9NY30	223 aa		33.79	■■■■□ 3
CPNE1-223	ENST00000475146	CCDC9	Q9Y3X0	531 aa	Known RBP	33.79	■■■■□ 3
CPNE1-223	ENST00000475146	CPSF1	Q10570	1443 aa	Known RBP	33.79	■■■■□ 3
CPNE1-223	ENST00000475146	NRK	Q7Z2Y5	1582 aa		33.78	■■■■□ 3
CPNE1-223	ENST00000475146	KTN1	Q86UP2	1357 aa	Known RBP	33.78	■■■■□ 3
CPNE1-223	ENST00000475146	SLC24A1	O60721	1099 aa		33.77	■■■■□ 3
CPNE1-223	ENST00000475146	NLRP6	P59044	892 aa		33.77	■■■■□ 3
CPNE1-223	ENST00000475146	VPS72	Q15906	364 aa		33.77	■■■■□ 3
CPNE1-223	ENST00000475146	NRAP	Q86VF7	1730 aa		33.76	■■■□□ 2.99
CPNE1-223	ENST00000475146	CHRNA2	Q15822	529 aa		33.75	■■■□□ 2.99
CPNE1-223	ENST00000475146	PUS7	Q96PZ0	661 aa	Known RBP	33.75	■■■□□ 2.99
CPNE1-223	ENST00000475146	GLI3	P10071	1580 aa		33.75	■■■□□ 2.99
CPNE1-223	ENST00000475146	TTC21B	Q7Z4L5	1316 aa		33.75	■■■□□ 2.99
CPNE1-223	ENST00000475146	PIK3C2A	O00443	1686 aa		33.74	■■■□□ 2.99
CPNE1-223	ENST00000475146	SLC12A5	Q9H2X9	1139 aa		33.73	■■■□□ 2.99
CPNE1-223	ENST00000475146	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	33.72	■■■□□ 2.99
CPNE1-223	ENST00000475146	MON2	Q7Z3U7	1717 aa		33.72	■■■□□ 2.99
CPNE1-223	ENST00000475146	TTC21A	Q8NDW8	1320 aa		33.72	■■■□□ 2.99
CPNE1-223	ENST00000475146	GC	P02774	474 aa		33.71	■■■□□ 2.99
CPNE1-223	ENST00000475146	CD163L1	Q9NR16	1453 aa		33.7	■■■□□ 2.99
CPNE1-223	ENST00000475146	TMF1	P82094	1093 aa		33.7	■■■□□ 2.99
CPNE1-223	ENST00000475146	TERF2IP	Q9NYB0	399 aa		33.68	■■■□□ 2.98
CPNE1-223	ENST00000475146	CPD	O75976	1380 aa		33.68	■■■□□ 2.98
CPNE1-223	ENST00000475146	SLIT3	O75094	1523 aa		33.67	■■■□□ 2.98
CPNE1-223	ENST00000475146	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	33.66	■■■□□ 2.98
CPNE1-223	ENST00000475146	NINL	Q9Y2I6	1382 aa		33.66	■■■□□ 2.98
CPNE1-223	ENST00000475146		A0A1W2PP64	1363 aa		33.64	■■■□□ 2.98
CPNE1-223	ENST00000475146	ZBTB7C	A1YPR0	619 aa		33.64	■■■□□ 2.98
CPNE1-223	ENST00000475146	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.64	■■■□□ 2.98
CPNE1-223	ENST00000475146	STRN4	Q9NRL3	753 aa		33.64	■■■□□ 2.98
CPNE1-223	ENST00000475146	EDC4	Q6P2E9	1401 aa	Known RBP	33.61	■■■□□ 2.97
CPNE1-223	ENST00000475146		A0A0G2JS52	829 aa		33.6	■■■□□ 2.97
CPNE1-223	ENST00000475146	MYT1	Q01538	1121 aa		33.6	■■■□□ 2.97
CPNE1-223	ENST00000475146	SPATA31A5	Q5VU36	1347 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	SPATA31A7	Q8IWB4	1347 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	SOX12	O15370	315 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	EVA1C	P58658	441 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	CDCA8	Q53HL2	280 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	SEPT12	Q8IYM1	358 aa		33.59	■■■□□ 2.97
CPNE1-223	ENST00000475146	LMO7	Q8WWI1	1683 aa		33.58	■■■□□ 2.97
CPNE1-223	ENST00000475146	NME9	Q86XW9	330 aa		33.58	■■■□□ 2.97
CPNE1-223	ENST00000475146	CAMTA1	Q9Y6Y1	1673 aa		33.58	■■■□□ 2.97
CPNE1-223	ENST00000475146	FAM98C	Q17RN3	349 aa	Known RBP	33.57	■■■□□ 2.96
CPNE1-223	ENST00000475146	KCNH5	Q8NCM2	988 aa		33.57	■■■□□ 2.96
CPNE1-223	ENST00000475146	ZRANB1	Q9UGI0	708 aa		33.56	■■■□□ 2.96
CPNE1-223	ENST00000475146	ONECUT3	O60422	494 aa	Predicted RBP	33.54	■■■□□ 2.96
CPNE1-223	ENST00000475146	USP31	Q70CQ4	1352 aa		33.54	■■■□□ 2.96
CPNE1-223	ENST00000475146	AATK	Q6ZMQ8	1374 aa		33.52	■■■□□ 2.96
CPNE1-223	ENST00000475146	ANKRD36B	Q8N2N9	1353 aa		33.52	■■■□□ 2.96
CPNE1-223	ENST00000475146	SPATA31A1	Q5TZJ5	1347 aa		33.52	■■■□□ 2.96
CPNE1-223	ENST00000475146	BRWD3	Q6RI45	1802 aa		33.51	■■■□□ 2.96
CPNE1-223	ENST00000475146	EIF4G2	P78344	907 aa	Known RBP eCLIP	33.51	■■■□□ 2.95
CPNE1-223	ENST00000475146	COL5A2	P05997	1499 aa	Predicted RBP	33.5	■■■□□ 2.95
CPNE1-223	ENST00000475146	NFAT5	O94916	1531 aa		33.49	■■■□□ 2.95
CPNE1-223	ENST00000475146	USP54	Q70EL1	1684 aa		33.49	■■■□□ 2.95
CPNE1-223	ENST00000475146	LARP1	Q6PKG0	1096 aa	Known RBP	33.49	■■■□□ 2.95
CPNE1-223	ENST00000475146	USP35	Q9P2H5	1018 aa		33.49	■■■□□ 2.95
CPNE1-223	ENST00000475146	ARHGEF25	Q86VW2	580 aa		33.48	■■■□□ 2.95
CPNE1-223	ENST00000475146	HSPA5	P11021	654 aa	Known RBP	33.46	■■■□□ 2.95
CPNE1-223	ENST00000475146	KRT27	Q7Z3Y8	459 aa		33.46	■■■□□ 2.95
CPNE1-223	ENST00000475146	COL18A1	P39060	1754 aa		33.44	■■■□□ 2.94
CPNE1-223	ENST00000475146	OVOS2	A0A0J9YW53	1432 aa		33.44	■■■□□ 2.94
CPNE1-223	ENST00000475146	OVOS2	Q6IE36	1432 aa		33.44	■■■□□ 2.94

Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms