RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 TRPM3Q9HCF6 1732 aaPredicted RBP20.01■□□□□ 0.79
VAMP4-203ENST00000474047 SLC24A1O60721 1099 aa20■□□□□ 0.79
VAMP4-203ENST00000474047 RXRBP28702 533 aa20■□□□□ 0.79
VAMP4-203ENST00000474047 NUTM2GQ5VZR2 741 aa19.99■□□□□ 0.79
VAMP4-203ENST00000474047 ABTB2Q8N961 1025 aa19.99■□□□□ 0.79
VAMP4-203ENST00000474047 MARF1Q9Y4F3 1742 aaKnown RBP19.97■□□□□ 0.79
VAMP4-203ENST00000474047 USP47Q96K76 1375 aa19.97■□□□□ 0.79
VAMP4-203ENST00000474047 FNBP4Q8N3X1 1017 aaPredicted RBP19.97■□□□□ 0.79
VAMP4-203ENST00000474047 TMC1Q8TDI8 760 aa19.97■□□□□ 0.79
VAMP4-203ENST00000474047 ALS2Q96Q42 1657 aa19.97■□□□□ 0.79
VAMP4-203ENST00000474047 ZNF692Q9BU19 519 aaPredicted RBP19.96■□□□□ 0.79
VAMP4-203ENST00000474047 TRPC5Q9UL62 973 aaPredicted RBP19.96■□□□□ 0.79
VAMP4-203ENST00000474047 RBM6P78332 1123 aaKnown RBP19.94■□□□□ 0.78
VAMP4-203ENST00000474047 BRD4O60885 1362 aaPredicted RBP19.94■□□□□ 0.78
VAMP4-203ENST00000474047 TMF1P82094 1093 aa19.93■□□□□ 0.78
VAMP4-203ENST00000474047 NLRP13Q86W25 1043 aa19.93■□□□□ 0.78
VAMP4-203ENST00000474047 TESK2Q96S53 571 aa19.93■□□□□ 0.78
VAMP4-203ENST00000474047 USP6P35125 1406 aa19.93■□□□□ 0.78
VAMP4-203ENST00000474047 HDGFL2Q7Z4V5 671 aaPredicted RBP19.91■□□□□ 0.78
VAMP4-203ENST00000474047 UNC5CLQ8IV45 518 aa19.91■□□□□ 0.78
VAMP4-203ENST00000474047 PUS7Q96PZ0 661 aaKnown RBP19.91■□□□□ 0.78
VAMP4-203ENST00000474047 ABCA3Q99758 1704 aa19.91■□□□□ 0.78
VAMP4-203ENST00000474047 FAM83GA6ND36 823 aa19.9■□□□□ 0.78
VAMP4-203ENST00000474047 NLRP6P59044 892 aa19.9■□□□□ 0.78
VAMP4-203ENST00000474047 PRDM11Q9NQV5 511 aa19.9■□□□□ 0.78
VAMP4-203ENST00000474047 KTN1Q86UP2 1357 aaKnown RBP19.9■□□□□ 0.78
VAMP4-203ENST00000474047 SLC12A5Q9H2X9 1139 aa19.89■□□□□ 0.77
VAMP4-203ENST00000474047 TERF2IPQ9NYB0 399 aa19.89■□□□□ 0.77
VAMP4-203ENST00000474047 CCDC9Q9Y3X0 531 aaKnown RBP19.89■□□□□ 0.77
VAMP4-203ENST00000474047 BCL9LQ86UU0 1499 aa19.89■□□□□ 0.77
VAMP4-203ENST00000474047 ZC3H6P61129 1189 aaKnown RBP19.88■□□□□ 0.77
VAMP4-203ENST00000474047 CDCA8Q53HL2 280 aa19.88■□□□□ 0.77
VAMP4-203ENST00000474047 TTC21BQ7Z4L5 1316 aa19.87■□□□□ 0.77
VAMP4-203ENST00000474047 SLIT2O94813 1529 aa19.87■□□□□ 0.77
VAMP4-203ENST00000474047 ATRNO75882 1429 aa19.87■□□□□ 0.77
VAMP4-203ENST00000474047 BTG4Q9NY30 223 aa19.86■□□□□ 0.77
VAMP4-203ENST00000474047 TTC21AQ8NDW8 1320 aa19.86■□□□□ 0.77
VAMP4-203ENST00000474047 CPSF1Q10570 1443 aaKnown RBP19.85■□□□□ 0.77
VAMP4-203ENST00000474047 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.85■□□□□ 0.77
VAMP4-203ENST00000474047 GJD4Q96KN9 370 aaPredicted RBP19.85■□□□□ 0.77
VAMP4-203ENST00000474047 AKAP12Q02952 1782 aa19.85■□□□□ 0.77
VAMP4-203ENST00000474047 KIAA0232Q92628 1395 aa19.85■□□□□ 0.77
VAMP4-203ENST00000474047 EIF4G2P78344 907 aaKnown RBP eCLIP19.85■□□□□ 0.77
VAMP4-203ENST00000474047 ZBTB7CA1YPR0 619 aa19.84■□□□□ 0.77
VAMP4-203ENST00000474047 GCP02774 474 aa19.84■□□□□ 0.77
VAMP4-203ENST00000474047 CHRNA2Q15822 529 aa19.84■□□□□ 0.77
VAMP4-203ENST00000474047 CDK12Q9NYV4 1490 aaPredicted RBP19.84■□□□□ 0.77
VAMP4-203ENST00000474047 PLCH1Q4KWH8 1693 aa19.84■□□□□ 0.77
VAMP4-203ENST00000474047 CRYBG1Q9Y4K1 1723 aa19.83■□□□□ 0.77
VAMP4-203ENST00000474047 COL14A1Q05707 1796 aaKnown RBP19.83■□□□□ 0.77
VAMP4-203ENST00000474047 USP19O94966 1318 aa19.83■□□□□ 0.76
VAMP4-203ENST00000474047 PHRF1Q9P1Y6 1649 aaKnown RBP19.83■□□□□ 0.76
VAMP4-203ENST00000474047 NINLQ9Y2I6 1382 aa19.83■□□□□ 0.76
VAMP4-203ENST00000474047 SSH2Q76I76 1423 aa19.83■□□□□ 0.76
VAMP4-203ENST00000474047 VPS72Q15906 364 aa19.82■□□□□ 0.76
VAMP4-203ENST00000474047 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.82■□□□□ 0.76
VAMP4-203ENST00000474047 NWD2Q9ULI1 1742 aa19.82■□□□□ 0.76
VAMP4-203ENST00000474047 EVA1CP58658 441 aa19.81■□□□□ 0.76
VAMP4-203ENST00000474047 SOX12O15370 315 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 POLR3GLQ9BT43 218 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 STRN4Q9NRL3 753 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 RGS12O14924 1447 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 MON2Q7Z3U7 1717 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 A0A1W2PP64 1363 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 HSPA5P11021 654 aaKnown RBP19.79■□□□□ 0.76
VAMP4-203ENST00000474047 KCNH5Q8NCM2 988 aa19.79■□□□□ 0.76
VAMP4-203ENST00000474047 PIK3C2AO00443 1686 aa19.78■□□□□ 0.76
VAMP4-203ENST00000474047 CD163L1Q9NR16 1453 aa19.78■□□□□ 0.76
VAMP4-203ENST00000474047 NRKQ7Z2Y5 1582 aa19.78■□□□□ 0.76
VAMP4-203ENST00000474047 EDC4Q6P2E9 1401 aaKnown RBP19.77■□□□□ 0.76
VAMP4-203ENST00000474047 A0A0G2JS52 829 aa19.77■□□□□ 0.76
VAMP4-203ENST00000474047 MYT1Q01538 1121 aa19.77■□□□□ 0.76
VAMP4-203ENST00000474047 NME9Q86XW9 330 aa19.77■□□□□ 0.76
VAMP4-203ENST00000474047 CPDO75976 1380 aa19.77■□□□□ 0.75
VAMP4-203ENST00000474047 ZRANB1Q9UGI0 708 aa19.75■□□□□ 0.75
VAMP4-203ENST00000474047 ANKRD36BQ8N2N9 1353 aa19.74■□□□□ 0.75
VAMP4-203ENST00000474047 SLIT3O75094 1523 aa19.73■□□□□ 0.75
VAMP4-203ENST00000474047 NRAPQ86VF7 1730 aa19.73■□□□□ 0.75
VAMP4-203ENST00000474047 GLI3P10071 1580 aa19.72■□□□□ 0.75
VAMP4-203ENST00000474047 SEPT12Q8IYM1 358 aa19.72■□□□□ 0.75
VAMP4-203ENST00000474047 SPATA31A5Q5VU36 1347 aa19.72■□□□□ 0.75
VAMP4-203ENST00000474047 SPATA31A7Q8IWB4 1347 aa19.72■□□□□ 0.75
VAMP4-203ENST00000474047 FAM98CQ17RN3 349 aaKnown RBP19.71■□□□□ 0.75
VAMP4-203ENST00000474047 USP35Q9P2H5 1018 aa19.71■□□□□ 0.75
VAMP4-203ENST00000474047 USP31Q70CQ4 1352 aa19.71■□□□□ 0.75
VAMP4-203ENST00000474047 COG3Q96JB2 828 aa19.71■□□□□ 0.75
VAMP4-203ENST00000474047 AATKQ6ZMQ8 1374 aa19.7■□□□□ 0.74
VAMP4-203ENST00000474047 ARHGEF25Q86VW2 580 aa19.69■□□□□ 0.74
VAMP4-203ENST00000474047 CAMTA1Q9Y6Y1 1673 aa19.69■□□□□ 0.74
VAMP4-203ENST00000474047 LARP1Q6PKG0 1096 aaKnown RBP19.68■□□□□ 0.74
VAMP4-203ENST00000474047 UPF1Q92900 1129 aaKnown RBP eCLIP19.68■□□□□ 0.74
VAMP4-203ENST00000474047 SPATA31A1Q5TZJ5 1347 aa19.67■□□□□ 0.74
VAMP4-203ENST00000474047 ONECUT3O60422 494 aaPredicted RBP19.67■□□□□ 0.74
VAMP4-203ENST00000474047 CSB-PGBD3P0DP91 1061 aa19.66■□□□□ 0.74
VAMP4-203ENST00000474047 TOM1L2Q6ZVM7 507 aa19.65■□□□□ 0.74
VAMP4-203ENST00000474047 LMO7Q8WWI1 1683 aa19.65■□□□□ 0.74
VAMP4-203ENST00000474047 KRT27Q7Z3Y8 459 aa19.65■□□□□ 0.74
VAMP4-203ENST00000474047 COL5A2P05997 1499 aaPredicted RBP19.64■□□□□ 0.73
VAMP4-203ENST00000474047 TCP11L2Q8N4U5 519 aa19.64■□□□□ 0.73
VAMP4-203ENST00000474047 GGNBP2Q9H3C7 697 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms