RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 ACEP12821 1306 aa24.06■■□□□ 1.44
USP40-212ENST00000473191 CENPJQ9HC77 1338 aaPredicted RBP24.06■■□□□ 1.44
USP40-212ENST00000473191 NRAPQ86VF7 1730 aa24.05■■□□□ 1.44
USP40-212ENST00000473191 NUTM2GQ5VZR2 741 aa24.05■■□□□ 1.44
USP40-212ENST00000473191 CABP2Q9NPB3 220 aa24.05■■□□□ 1.44
USP40-212ENST00000473191 POLR3AO14802 1390 aaPredicted RBP24.04■■□□□ 1.44
USP40-212ENST00000473191 ATAD2Q6PL18 1390 aa24.04■■□□□ 1.44
USP40-212ENST00000473191 CCDC61Q9Y6R9 512 aa24.04■■□□□ 1.44
USP40-212ENST00000473191 BRWD3Q6RI45 1802 aa24.03■■□□□ 1.44
USP40-212ENST00000473191 VPS72Q15906 364 aa24.03■■□□□ 1.44
USP40-212ENST00000473191 NBPF8Q3BBV2 869 aa24.03■■□□□ 1.44
USP40-212ENST00000473191 EP400Q96L91 3159 aa24.03■■□□□ 1.44
USP40-212ENST00000473191 PLEKHG3A1L390 1219 aa24.01■■□□□ 1.43
USP40-212ENST00000473191 SRPK2P78362 688 aaKnown RBP24.01■■□□□ 1.43
USP40-212ENST00000473191 BTG4Q9NY30 223 aa24.01■■□□□ 1.43
USP40-212ENST00000473191 PHRF1Q9P1Y6 1649 aaKnown RBP24■■□□□ 1.43
USP40-212ENST00000473191 CCDC9Q9Y3X0 531 aaKnown RBP24■■□□□ 1.43
USP40-212ENST00000473191 PPIP5K1Q6PFW1 1433 aa24■■□□□ 1.43
USP40-212ENST00000473191 COL14A1Q05707 1796 aaKnown RBP23.99■■□□□ 1.43
USP40-212ENST00000473191 SEPT12Q8IYM1 358 aa23.98■■□□□ 1.43
USP40-212ENST00000473191 ROCK2O75116 1388 aaKnown RBP23.97■■□□□ 1.43
USP40-212ENST00000473191 CHRNA2Q15822 529 aa23.96■■□□□ 1.43
USP40-212ENST00000473191 KIAA0232Q92628 1395 aa23.95■■□□□ 1.42
USP40-212ENST00000473191 ONECUT3O60422 494 aaPredicted RBP23.94■■□□□ 1.42
USP40-212ENST00000473191 ZC3H6P61129 1189 aaKnown RBP23.94■■□□□ 1.42
USP40-212ENST00000473191 CABP1Q9NZU7 370 aa23.94■■□□□ 1.42
USP40-212ENST00000473191 PRDM11Q9NQV5 511 aa23.93■■□□□ 1.42
USP40-212ENST00000473191 NRKQ7Z2Y5 1582 aa23.92■■□□□ 1.42
USP40-212ENST00000473191 FAM98CQ17RN3 349 aaKnown RBP23.92■■□□□ 1.42
USP40-212ENST00000473191 ABTB2Q8N961 1025 aa23.92■■□□□ 1.42
USP40-212ENST00000473191 SPATA31A5Q5VU36 1347 aa23.87■■□□□ 1.41
USP40-212ENST00000473191 SPATA31A7Q8IWB4 1347 aa23.87■■□□□ 1.41
USP40-212ENST00000473191 USP6P35125 1406 aa23.87■■□□□ 1.41
USP40-212ENST00000473191 A0A0G2JS52 829 aa23.87■■□□□ 1.41
USP40-212ENST00000473191 MYT1Q01538 1121 aa23.87■■□□□ 1.41
USP40-212ENST00000473191 TRIM26Q12899 539 aaPredicted RBP23.87■■□□□ 1.41
USP40-212ENST00000473191 USP19O94966 1318 aa23.86■■□□□ 1.41
USP40-212ENST00000473191 EVC2Q86UK5 1308 aa23.86■■□□□ 1.41
USP40-212ENST00000473191 KRT27Q7Z3Y8 459 aa23.86■■□□□ 1.41
USP40-212ENST00000473191 STRN4Q9NRL3 753 aa23.86■■□□□ 1.41
USP40-212ENST00000473191 FAM182BQ5T319 152 aa23.85■■□□□ 1.41
USP40-212ENST00000473191 SSH2Q76I76 1423 aa23.84■■□□□ 1.41
USP40-212ENST00000473191 CAMTA1Q9Y6Y1 1673 aa23.84■■□□□ 1.41
USP40-212ENST00000473191 DEFB132Q7Z7B7 95 aa23.83■■□□□ 1.41
USP40-212ENST00000473191 PIK3C2AO00443 1686 aa23.83■■□□□ 1.4
USP40-212ENST00000473191 LMO7Q8WWI1 1683 aa23.83■■□□□ 1.4
USP40-212ENST00000473191 THSD7AQ9UPZ6 1657 aa23.83■■□□□ 1.4
USP40-212ENST00000473191 TONSLQ96HA7 1378 aa23.82■■□□□ 1.4
USP40-212ENST00000473191 GCP02774 474 aa23.82■■□□□ 1.4
USP40-212ENST00000473191 CARD11Q9BXL7 1154 aa23.82■■□□□ 1.4
USP40-212ENST00000473191 BLMP54132 1417 aaPredicted RBP23.82■■□□□ 1.4
USP40-212ENST00000473191 SPATA31A1Q5TZJ5 1347 aa23.82■■□□□ 1.4
USP40-212ENST00000473191 NLRP13Q86W25 1043 aa23.81■■□□□ 1.4
USP40-212ENST00000473191 CCDC125Q86Z20 511 aa23.81■■□□□ 1.4
USP40-212ENST00000473191 USP35Q9P2H5 1018 aa23.8■■□□□ 1.4
USP40-212ENST00000473191 AKAP12Q02952 1782 aa23.8■■□□□ 1.4
USP40-212ENST00000473191 CPDO75976 1380 aa23.79■■□□□ 1.4
USP40-212ENST00000473191 LARP1Q6PKG0 1096 aaKnown RBP23.79■■□□□ 1.4
USP40-212ENST00000473191 NLRP6P59044 892 aa23.78■■□□□ 1.4
USP40-212ENST00000473191 SLIT3O75094 1523 aa23.77■■□□□ 1.4
USP40-212ENST00000473191 ZBTB7CA1YPR0 619 aa23.76■■□□□ 1.39
USP40-212ENST00000473191 BRD4O60885 1362 aaPredicted RBP23.76■■□□□ 1.39
USP40-212ENST00000473191 CPSF1Q10570 1443 aaKnown RBP23.76■■□□□ 1.39
USP40-212ENST00000473191 EVA1CP58658 441 aa23.75■■□□□ 1.39
USP40-212ENST00000473191 TTC21BQ7Z4L5 1316 aa23.75■■□□□ 1.39
USP40-212ENST00000473191 SBNO2Q9Y2G9 1366 aa23.73■■□□□ 1.39
USP40-212ENST00000473191 COL5A2P05997 1499 aaPredicted RBP23.73■■□□□ 1.39
USP40-212ENST00000473191 CD163L1Q9NR16 1453 aa23.73■■□□□ 1.39
USP40-212ENST00000473191 ZRANB1Q9UGI0 708 aa23.72■■□□□ 1.39
USP40-212ENST00000473191 COL18A1P39060 1754 aa23.71■■□□□ 1.39
USP40-212ENST00000473191 MON2Q7Z3U7 1717 aa23.7■■□□□ 1.39
USP40-212ENST00000473191 SOX12O15370 315 aa23.7■■□□□ 1.38
USP40-212ENST00000473191 ZNF692Q9BU19 519 aaPredicted RBP23.7■■□□□ 1.38
USP40-212ENST00000473191 AXIN2Q9Y2T1 843 aa23.7■■□□□ 1.38
USP40-212ENST00000473191 KTN1Q86UP2 1357 aaKnown RBP23.69■■□□□ 1.38
USP40-212ENST00000473191 SF3B2Q13435 895 aaKnown RBP23.69■■□□□ 1.38
USP40-212ENST00000473191 SLC12A5Q9H2X9 1139 aa23.68■■□□□ 1.38
USP40-212ENST00000473191 BARGINQ6ZT62 677 aa23.67■■□□□ 1.38
USP40-212ENST00000473191 AATKQ6ZMQ8 1374 aa23.66■■□□□ 1.38
USP40-212ENST00000473191 RGPD5Q99666 1765 aa23.66■■□□□ 1.38
USP40-212ENST00000473191 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.66■■□□□ 1.382e-6■□□□□ 9
USP40-212ENST00000473191 TCP11L2Q8N4U5 519 aa23.66■■□□□ 1.38
USP40-212ENST00000473191 TMC1Q8TDI8 760 aa23.66■■□□□ 1.38
USP40-212ENST00000473191 TESK2Q96S53 571 aa23.66■■□□□ 1.38
USP40-212ENST00000473191 TNS1Q9HBL0 1735 aaKnown RBP23.66■■□□□ 1.38
USP40-212ENST00000473191 ST20-MTHFSA0A0A6YYL1 179 aa23.65■■□□□ 1.38
USP40-212ENST00000473191 SRCAPQ6ZRS2 3230 aa23.65■■□□□ 1.38
USP40-212ENST00000473191 RGPD1P0DJD0 1748 aa23.64■■□□□ 1.38
USP40-212ENST00000473191 NFAT5O94916 1531 aa23.64■■□□□ 1.38
USP40-212ENST00000473191 TTC21AQ8NDW8 1320 aa23.64■■□□□ 1.38
USP40-212ENST00000473191 EN1Q05925 392 aaPredicted RBP23.64■■□□□ 1.37
USP40-212ENST00000473191 ARHGEF25Q86VW2 580 aa23.64■■□□□ 1.37
USP40-212ENST00000473191 CRB1P82279 1406 aa23.63■■□□□ 1.37
USP40-212ENST00000473191 NME9Q86XW9 330 aa23.63■■□□□ 1.37
USP40-212ENST00000473191 TRIM37O94972 964 aa23.62■■□□□ 1.37
USP40-212ENST00000473191 BAG6P46379 1132 aa23.61■■□□□ 1.37
USP40-212ENST00000473191 A0A1W2PP64 1363 aa23.6■■□□□ 1.37
USP40-212ENST00000473191 PARP4Q9UKK3 1724 aaKnown RBP23.59■■□□□ 1.37
USP40-212ENST00000473191 THRAP3Q9Y2W1 955 aaKnown RBP23.59■■□□□ 1.37
USP40-212ENST00000473191 PDE3BQ13370 1112 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms