RNA–Protein interactions for RNA: ENST00000471968.1

HDAC3-206, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-206ENST00000471968 NUTM2FA1L443 756 aa10.74□□□□□ -0.69
HDAC3-206ENST00000471968 YBX3P16989 372 aaKnown RBP eCLIP10.74□□□□□ -0.692e-8■■□□□ 12.5
HDAC3-206ENST00000471968 LMOD2Q6P5Q4 547 aa10.73□□□□□ -0.69
HDAC3-206ENST00000471968 KRT28Q7Z3Y7 464 aa10.73□□□□□ -0.69
HDAC3-206ENST00000471968 STK32BQ9NY57 414 aa10.73□□□□□ -0.69
HDAC3-206ENST00000471968 ROBO2Q9HCK4 1378 aa10.73□□□□□ -0.69
HDAC3-206ENST00000471968 ADCY9O60503 1353 aa10.72□□□□□ -0.69
HDAC3-206ENST00000471968 CCDC144AA2RUR9 1427 aa10.71□□□□□ -0.69
HDAC3-206ENST00000471968 HSPA1AP0DMV8 641 aaKnown RBP10.71□□□□□ -0.69
HDAC3-206ENST00000471968 HSPA1BP0DMV9 641 aaKnown RBP10.71□□□□□ -0.69
HDAC3-206ENST00000471968 SPATA31A1Q5TZJ5 1347 aa10.71□□□□□ -0.69
HDAC3-206ENST00000471968 TNS3Q68CZ2 1445 aa10.71□□□□□ -0.69
HDAC3-206ENST00000471968 NLGN2Q8NFZ4 835 aa10.71□□□□□ -0.69
HDAC3-206ENST00000471968 WDR90Q96KV7 1748 aa10.7□□□□□ -0.7
HDAC3-206ENST00000471968 PLSCR1O15162 318 aa10.7□□□□□ -0.7
HDAC3-206ENST00000471968 SLC15A2Q16348 729 aa10.7□□□□□ -0.7
HDAC3-206ENST00000471968 ABCA3Q99758 1704 aa10.69□□□□□ -0.7
HDAC3-206ENST00000471968 RRBP1Q9P2E9 1410 aaKnown RBP10.68□□□□□ -0.7
HDAC3-206ENST00000471968 TOMM70O94826 608 aa10.68□□□□□ -0.7
HDAC3-206ENST00000471968 PROM2Q8N271 834 aa10.68□□□□□ -0.7
HDAC3-206ENST00000471968 USP35Q9P2H5 1018 aa10.68□□□□□ -0.7
HDAC3-206ENST00000471968 CDC42BPGQ6DT37 1551 aa10.66□□□□□ -0.7
HDAC3-206ENST00000471968 RGPD3A6NKT7 1758 aaPredicted RBP10.66□□□□□ -0.7
HDAC3-206ENST00000471968 COL14A1Q05707 1796 aaKnown RBP10.66□□□□□ -0.7
HDAC3-206ENST00000471968 RGPD4Q7Z3J3 1758 aa10.66□□□□□ -0.7
HDAC3-206ENST00000471968 TECPR2O15040 1411 aa10.66□□□□□ -0.7
HDAC3-206ENST00000471968 PSME1Q06323 249 aa10.65□□□□□ -0.7
HDAC3-206ENST00000471968 STRN4Q9NRL3 753 aa10.65□□□□□ -0.7
HDAC3-206ENST00000471968 ARHGEF10O15013 1369 aa10.65□□□□□ -0.71
HDAC3-206ENST00000471968 MLLT1Q03111 559 aaPredicted RBP10.64□□□□□ -0.71
HDAC3-206ENST00000471968 PTF1AQ7RTS3 328 aa10.64□□□□□ -0.71
HDAC3-206ENST00000471968 HFM1A2PYH4 1435 aa10.64□□□□□ -0.71
HDAC3-206ENST00000471968 POLD1P28340 1107 aa10.62□□□□□ -0.71
HDAC3-206ENST00000471968 TXNRD1Q16881 649 aa10.62□□□□□ -0.71
HDAC3-206ENST00000471968 ZNF326Q5BKZ1 582 aaKnown RBP10.62□□□□□ -0.71
HDAC3-206ENST00000471968 BARGINQ6ZT62 677 aa10.61□□□□□ -0.71
HDAC3-206ENST00000471968 PRDM11Q9NQV5 511 aa10.61□□□□□ -0.71
HDAC3-206ENST00000471968 SBNO1A3KN83 1393 aa10.61□□□□□ -0.71
HDAC3-206ENST00000471968 KIF1AQ12756 1690 aa10.6□□□□□ -0.71
HDAC3-206ENST00000471968 NAIPQ13075 1403 aa10.6□□□□□ -0.71
HDAC3-206ENST00000471968 MYOM3Q5VTT5 1437 aa10.6□□□□□ -0.71
HDAC3-206ENST00000471968 C11orf95C9JLR9 678 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-206ENST00000471968 OVOS2A0A0G2JMS6 1433 aa10.59□□□□□ -0.71
HDAC3-206ENST00000471968 OVOS2A0A0J9YW53 1432 aa10.59□□□□□ -0.71
HDAC3-206ENST00000471968 OVOS2Q6IE36 1432 aa10.59□□□□□ -0.71
HDAC3-206ENST00000471968 IQGAP3Q86VI3 1631 aa10.59□□□□□ -0.71
HDAC3-206ENST00000471968 USP19O94966 1318 aa10.58□□□□□ -0.71
HDAC3-206ENST00000471968 DHX57Q6P158 1386 aaKnown RBP10.58□□□□□ -0.72
HDAC3-206ENST00000471968 CHRNA2Q15822 529 aa10.57□□□□□ -0.72
HDAC3-206ENST00000471968 PHF8Q9UPP1 1060 aa10.57□□□□□ -0.72
HDAC3-206ENST00000471968 PRAG1Q86YV5 1406 aa10.57□□□□□ -0.72
HDAC3-206ENST00000471968 TCP11L2Q8N4U5 519 aa10.56□□□□□ -0.72
HDAC3-206ENST00000471968 RBM46Q8TBY0 533 aaKnown RBP10.56□□□□□ -0.72
HDAC3-206ENST00000471968 PMFBP1Q8TBY8 1022 aa10.56□□□□□ -0.72
HDAC3-206ENST00000471968 EVA1CP58658 441 aa10.55□□□□□ -0.72
HDAC3-206ENST00000471968 NMRK2Q9NPI5 230 aa10.55□□□□□ -0.72
HDAC3-206ENST00000471968 CHIC2Q9UKJ5 165 aa10.55□□□□□ -0.72
HDAC3-206ENST00000471968 KIAA1210Q9ULL0 1709 aa10.55□□□□□ -0.72
HDAC3-206ENST00000471968 C16orf71Q8IYS4 520 aaPredicted RBP10.54□□□□□ -0.72
HDAC3-206ENST00000471968 ABHD8Q96I13 439 aa10.54□□□□□ -0.72
HDAC3-206ENST00000471968 TULP4Q9NRJ4 1543 aa10.53□□□□□ -0.72
HDAC3-206ENST00000471968 ANKRD30AQ9BXX3 1397 aa10.53□□□□□ -0.72
HDAC3-206ENST00000471968 ARHGEF28Q8N1W1 1705 aaKnown RBP10.53□□□□□ -0.72
HDAC3-206ENST00000471968 PEAK1Q9H792 1746 aa10.53□□□□□ -0.72
HDAC3-206ENST00000471968 FSTL1Q12841 308 aa10.53□□□□□ -0.72
HDAC3-206ENST00000471968 TOPAZ1Q8N9V7 1692 aa10.53□□□□□ -0.72
HDAC3-206ENST00000471968 KIAA0232Q92628 1395 aa10.52□□□□□ -0.72
HDAC3-206ENST00000471968 SSH2Q76I76 1423 aa10.52□□□□□ -0.73
HDAC3-206ENST00000471968 ZNF827Q17R98 1081 aa10.52□□□□□ -0.73
HDAC3-206ENST00000471968 LARP1Q6PKG0 1096 aaKnown RBP10.52□□□□□ -0.73
HDAC3-206ENST00000471968 WAPLQ7Z5K2 1190 aa10.52□□□□□ -0.73
HDAC3-206ENST00000471968 SLC16A10Q8TF71 515 aa10.52□□□□□ -0.73
HDAC3-206ENST00000471968 SBF2Q86WG5 1849 aa10.51□□□□□ -0.73
HDAC3-206ENST00000471968 NRXN1Q9ULB1 1477 aa10.51□□□□□ -0.73
HDAC3-206ENST00000471968 RGS19P49795 217 aa10.51□□□□□ -0.73
HDAC3-206ENST00000471968 E9PCH4 1651 aa10.5□□□□□ -0.73
HDAC3-206ENST00000471968 FMN2Q9NZ56 1722 aa10.5□□□□□ -0.73
HDAC3-206ENST00000471968 ATP7BP35670 1465 aa10.5□□□□□ -0.73
HDAC3-206ENST00000471968 PRDM10Q9NQV6 1147 aa10.5□□□□□ -0.73
HDAC3-206ENST00000471968 TNRC18O15417 2968 aaPredicted RBP10.49□□□□□ -0.73
HDAC3-206ENST00000471968 CCDC85CA6NKD9 419 aa10.49□□□□□ -0.73
HDAC3-206ENST00000471968 FOXN1O15353 648 aa10.49□□□□□ -0.73
HDAC3-206ENST00000471968 THRAP3Q9Y2W1 955 aaKnown RBP10.49□□□□□ -0.73
HDAC3-206ENST00000471968 PARP4Q9UKK3 1724 aaKnown RBP10.49□□□□□ -0.73
HDAC3-206ENST00000471968 DAPK1P53355 1430 aa10.49□□□□□ -0.73
HDAC3-206ENST00000471968 ZC3H6P61129 1189 aaKnown RBP10.48□□□□□ -0.73
HDAC3-206ENST00000471968 DDB1Q16531 1140 aa10.47□□□□□ -0.73
HDAC3-206ENST00000471968 STK26Q9P289 416 aa10.47□□□□□ -0.73
HDAC3-206ENST00000471968 PLEKHH1Q9ULM0 1364 aa10.47□□□□□ -0.73
HDAC3-206ENST00000471968 PAPPAQ13219 1627 aa10.47□□□□□ -0.73
HDAC3-206ENST00000471968 PDE4DIPQ5VU43 2346 aa10.46□□□□□ -0.74
HDAC3-206ENST00000471968 COL24A1Q17RW2 1714 aa10.45□□□□□ -0.74
HDAC3-206ENST00000471968 PNPLA7Q6ZV29 1317 aa10.45□□□□□ -0.74
HDAC3-206ENST00000471968 MARCH10Q8NA82 808 aaPredicted RBP10.45□□□□□ -0.74
HDAC3-206ENST00000471968 RGPD8O14715 1765 aaPredicted RBP10.44□□□□□ -0.74
HDAC3-206ENST00000471968 ALS2Q96Q42 1657 aa10.44□□□□□ -0.74
HDAC3-206ENST00000471968 PHRF1Q9P1Y6 1649 aaKnown RBP10.44□□□□□ -0.74
HDAC3-206ENST00000471968 ANKRD50Q9ULJ7 1429 aa10.44□□□□□ -0.74
HDAC3-206ENST00000471968 TRPM3Q9HCF6 1732 aaPredicted RBP10.44□□□□□ -0.74
HDAC3-206ENST00000471968 CRYBG1Q9Y4K1 1723 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms