RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 PTGDRQ13258 359 aa4.05□□□□□ -1.76
UBXN4-207ENST00000471246 KRTAP17-1Q9BYP8 105 aa4.05□□□□□ -1.76
UBXN4-207ENST00000471246 TSHZ2Q9NRE2 1034 aa4.05□□□□□ -1.76
UBXN4-207ENST00000471246 TLL2Q9Y6L7 1015 aa4.05□□□□□ -1.76
UBXN4-207ENST00000471246 SOS2Q07890 1332 aaPredicted RBP4.04□□□□□ -1.76
UBXN4-207ENST00000471246 PLCB2Q00722 1185 aa4.04□□□□□ -1.76
UBXN4-207ENST00000471246 KRBA1A5PL33 1030 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 ADH1CP00326 375 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 SH3BP2P78314 561 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 MAP3K10Q02779 954 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 PTCRAQ6ISU1 281 aaPredicted RBP4.03□□□□□ -1.76
UBXN4-207ENST00000471246 RDH13Q8NBN7 331 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 PXYLP1Q8TE99 480 aa4.03□□□□□ -1.76
UBXN4-207ENST00000471246 GCGRP47871 477 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 PTSQ03393 145 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 E2F4Q16254 413 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 ZMYM1Q5SVZ6 1142 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 VWA5B2Q8N398 1253 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 BEND7Q8N7W2 519 aaPredicted RBP4.02□□□□□ -1.77
UBXN4-207ENST00000471246 ZFAND3Q9H8U3 227 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 WDR70Q9NW82 654 aa4.02□□□□□ -1.77
UBXN4-207ENST00000471246 USB1Q9BQ65 265 aaKnown RBP4.01□□□□□ -1.77
UBXN4-207ENST00000471246 BMP2P12643 396 aa4□□□□□ -1.77
UBXN4-207ENST00000471246 CCDC155Q8N6L0 562 aa4□□□□□ -1.77
UBXN4-207ENST00000471246 HAP1P54257 671 aaPredicted RBP3.99□□□□□ -1.77
UBXN4-207ENST00000471246 SRSF11Q05519 484 aaKnown RBP3.99□□□□□ -1.77
UBXN4-207ENST00000471246 Q3C1V9 767 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 FOXD4L6Q3SYB3 417 aaPredicted RBP3.99□□□□□ -1.77
UBXN4-207ENST00000471246 FOXD4L3Q6VB84 417 aaPredicted RBP3.99□□□□□ -1.77
UBXN4-207ENST00000471246 SV2AQ7L0J3 742 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 SH3RF1Q7Z6J0 888 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 LINC00528Q8N1L1 170 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 MPNDQ8N594 471 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 KCNV2Q8TDN2 545 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 ENAMQ9NRM1 1142 aa3.99□□□□□ -1.77
UBXN4-207ENST00000471246 PLEKHG3A1L390 1219 aa3.98□□□□□ -1.77
UBXN4-207ENST00000471246 SLC35F4A4IF30 521 aa3.98□□□□□ -1.77
UBXN4-207ENST00000471246 DDX11L8A8MPP1 907 aa3.98□□□□□ -1.77
UBXN4-207ENST00000471246 ZIC2O95409 532 aaPredicted RBP3.98□□□□□ -1.77
UBXN4-207ENST00000471246 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.98□□□□□ -1.779e-12■■■□□ 15.1
UBXN4-207ENST00000471246 PODNQ7Z5L7 613 aa3.98□□□□□ -1.77
UBXN4-207ENST00000471246 ITPKCQ96DU7 683 aa3.98□□□□□ -1.77
UBXN4-207ENST00000471246 CDC14CA4D256 554 aa3.97□□□□□ -1.77
UBXN4-207ENST00000471246 OATP04181 439 aa3.97□□□□□ -1.77
UBXN4-207ENST00000471246 ITGA6P23229 1130 aa3.97□□□□□ -1.77
UBXN4-207ENST00000471246 SEMA6BQ9H3T3 888 aa3.97□□□□□ -1.77
UBXN4-207ENST00000471246 DAXXQ9UER7 740 aaPredicted RBP3.97□□□□□ -1.77
UBXN4-207ENST00000471246 FIGNL2A6NMB9 653 aa3.96□□□□□ -1.78
UBXN4-207ENST00000471246 GAS6Q14393 721 aa3.96□□□□□ -1.78
UBXN4-207ENST00000471246 METTL3Q86U44 580 aaKnown RBP3.96□□□□□ -1.78
UBXN4-207ENST00000471246 P3H3Q8IVL6 736 aa3.96□□□□□ -1.78
UBXN4-207ENST00000471246 MEIOBQ8N635 442 aa3.96□□□□□ -1.78
UBXN4-207ENST00000471246 COBLO75128 1261 aa3.95□□□□□ -1.78
UBXN4-207ENST00000471246 JUNDP17535 347 aa3.95□□□□□ -1.78
UBXN4-207ENST00000471246 GRIPAP1Q4V328 841 aa3.95□□□□□ -1.78
UBXN4-207ENST00000471246 NEDD1Q8NHV4 660 aa3.95□□□□□ -1.78
UBXN4-207ENST00000471246 SCO2A0A1W2PP80 73 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 TTLL8A6PVC2 850 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 UPP2O95045 317 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 VARSP26640 1264 aaKnown RBP3.94□□□□□ -1.78
UBXN4-207ENST00000471246 COL8A1P27658 744 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 MLLT3P42568 568 aaPredicted RBP3.94□□□□□ -1.78
UBXN4-207ENST00000471246 LINC01559Q495D7 138 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 ARHGEF1Q92888 912 aaKnown RBP3.94□□□□□ -1.78
UBXN4-207ENST00000471246 NUDT12Q9BQG2 462 aa3.94□□□□□ -1.78
UBXN4-207ENST00000471246 NR3C2P08235 984 aa3.93□□□□□ -1.78
UBXN4-207ENST00000471246 NLRP7Q8WX94 980 aa3.93□□□□□ -1.78
UBXN4-207ENST00000471246 BAP1Q92560 729 aa3.93□□□□□ -1.78
UBXN4-207ENST00000471246 ZFP64Q9NPA5 681 aa3.93□□□□□ -1.78
UBXN4-207ENST00000471246 BCRP11274 1271 aa3.92□□□□□ -1.78
UBXN4-207ENST00000471246 SNRPNP63162 240 aaKnown RBP3.92□□□□□ -1.78
UBXN4-207ENST00000471246 ARTNQ5T4W7 220 aa3.92□□□□□ -1.78
UBXN4-207ENST00000471246 HLA-CQ95604 372 aa3.92□□□□□ -1.78
UBXN4-207ENST00000471246 KDM2AQ9Y2K7 1162 aa3.92□□□□□ -1.78
UBXN4-207ENST00000471246 C1QTNF9BB2RNN3 333 aa3.91□□□□□ -1.78
UBXN4-207ENST00000471246 CDK15Q96Q40 435 aa3.91□□□□□ -1.78
UBXN4-207ENST00000471246 NUTM2FA1L443 756 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 DOC2BQ14184 412 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 VSIG10Q8N0Z9 540 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 ZNF511Q8NB15 262 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 ACDQ96AP0 544 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 UNC93B1Q9H1C4 597 aa3.9□□□□□ -1.79
UBXN4-207ENST00000471246 ARID1BQ8NFD5 2236 aaPredicted RBP3.9□□□□□ -1.79
UBXN4-207ENST00000471246 IGF1RP08069 1367 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 SEMA3EO15041 775 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 NBPF11Q86T75 865 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 ALYREFQ86V81 257 aaKnown RBP3.89□□□□□ -1.79
UBXN4-207ENST00000471246 CD163Q86VB7 1156 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 SULF1Q8IWU6 871 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 SYMPKQ92797 1274 aaKnown RBP3.89□□□□□ -1.79
UBXN4-207ENST00000471246 TSEN34Q9BSV6 310 aaKnown RBP3.89□□□□□ -1.79
UBXN4-207ENST00000471246 KRTAP4-11Q9BYQ6 195 aa3.89□□□□□ -1.79
UBXN4-207ENST00000471246 SENP3-EIF4A1A0A087X0R7 540 aa3.88□□□□□ -1.79
UBXN4-207ENST00000471246 FCHSD2O94868 740 aa3.88□□□□□ -1.79
UBXN4-207ENST00000471246 GRM5P41594 1212 aa3.88□□□□□ -1.79
UBXN4-207ENST00000471246 NR5A1Q13285 461 aa3.88□□□□□ -1.79
UBXN4-207ENST00000471246 MBIPQ9NS73 344 aa3.88□□□□□ -1.79
UBXN4-207ENST00000471246 CUEDC1Q9NWM3 386 aaPredicted RBP3.88□□□□□ -1.79
UBXN4-207ENST00000471246 TESPA1A2RU30 521 aaPredicted RBP3.87□□□□□ -1.79
UBXN4-207ENST00000471246 SPTLC1O15269 473 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms