RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 POLR3AO14802 1390 aaPredicted RBP22.28■■□□□ 1.16
HDAC6-218ENST00000470942 CABP1Q9NZU7 370 aa22.26■■□□□ 1.15
HDAC6-218ENST00000470942 BCL9LQ86UU0 1499 aa22.25■■□□□ 1.15
HDAC6-218ENST00000470942 CDK12Q9NYV4 1490 aaPredicted RBP22.24■■□□□ 1.15
HDAC6-218ENST00000470942 ATRNO75882 1429 aa22.23■■□□□ 1.15
HDAC6-218ENST00000470942 NUTM2GQ5VZR2 741 aa22.23■■□□□ 1.15
HDAC6-218ENST00000470942 CLSPNQ9HAW4 1339 aa22.23■■□□□ 1.15
HDAC6-218ENST00000470942 UNC5CLQ8IV45 518 aa22.22■■□□□ 1.15
HDAC6-218ENST00000470942 SLIT2O94813 1529 aa22.21■■□□□ 1.15
HDAC6-218ENST00000470942 PLCH1Q4KWH8 1693 aa22.21■■□□□ 1.15
HDAC6-218ENST00000470942 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.21■■□□□ 1.15
HDAC6-218ENST00000470942 CRYBG1Q9Y4K1 1723 aa22.2■■□□□ 1.14
HDAC6-218ENST00000470942 FAM83GA6ND36 823 aa22.2■■□□□ 1.14
HDAC6-218ENST00000470942 ABTB2Q8N961 1025 aa22.2■■□□□ 1.14
HDAC6-218ENST00000470942 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
HDAC6-218ENST00000470942 SBNO2Q9Y2G9 1366 aa22.19■■□□□ 1.14
HDAC6-218ENST00000470942 RGS12O14924 1447 aa22.19■■□□□ 1.14
HDAC6-218ENST00000470942 NWD2Q9ULI1 1742 aa22.18■■□□□ 1.14
HDAC6-218ENST00000470942 ATAD2Q6PL18 1390 aa22.17■■□□□ 1.14
HDAC6-218ENST00000470942 GJD4Q96KN9 370 aaPredicted RBP22.17■■□□□ 1.14
HDAC6-218ENST00000470942 TIMELESSQ9UNS1 1208 aa22.17■■□□□ 1.14
HDAC6-218ENST00000470942 PHRF1Q9P1Y6 1649 aaKnown RBP22.17■■□□□ 1.14
HDAC6-218ENST00000470942 COL14A1Q05707 1796 aaKnown RBP22.16■■□□□ 1.14
HDAC6-218ENST00000470942 USP6P35125 1406 aa22.15■■□□□ 1.14
HDAC6-218ENST00000470942 BRD4O60885 1362 aaPredicted RBP22.15■■□□□ 1.14
HDAC6-218ENST00000470942 ST20-MTHFSA0A0A6YYL1 179 aa22.15■■□□□ 1.14
HDAC6-218ENST00000470942 CCDC9Q9Y3X0 531 aaKnown RBP22.15■■□□□ 1.14
HDAC6-218ENST00000470942 NLRP13Q86W25 1043 aa22.14■■□□□ 1.13
HDAC6-218ENST00000470942 PRDM11Q9NQV5 511 aa22.14■■□□□ 1.13
HDAC6-218ENST00000470942 BTG4Q9NY30 223 aa22.14■■□□□ 1.13
HDAC6-218ENST00000470942 AKAP12Q02952 1782 aa22.14■■□□□ 1.13
HDAC6-218ENST00000470942 ZC3H6P61129 1189 aaKnown RBP22.13■■□□□ 1.13
HDAC6-218ENST00000470942 ZNF692Q9BU19 519 aaPredicted RBP22.13■■□□□ 1.13
HDAC6-218ENST00000470942 VPS72Q15906 364 aa22.12■■□□□ 1.13
HDAC6-218ENST00000470942 TMC1Q8TDI8 760 aa22.12■■□□□ 1.13
HDAC6-218ENST00000470942 KIAA0232Q92628 1395 aa22.12■■□□□ 1.13
HDAC6-218ENST00000470942 GLI3P10071 1580 aa22.11■■□□□ 1.13
HDAC6-218ENST00000470942 NLRP6P59044 892 aa22.1■■□□□ 1.13
HDAC6-218ENST00000470942 CHRNA2Q15822 529 aa22.1■■□□□ 1.13
HDAC6-218ENST00000470942 NRAPQ86VF7 1730 aa22.1■■□□□ 1.13
HDAC6-218ENST00000470942 UPF1Q92900 1129 aaKnown RBP eCLIP22.09■■□□□ 1.13
HDAC6-218ENST00000470942 KTN1Q86UP2 1357 aaKnown RBP22.09■■□□□ 1.13
HDAC6-218ENST00000470942 USP19O94966 1318 aa22.08■■□□□ 1.13
HDAC6-218ENST00000470942 TESK2Q96S53 571 aa22.08■■□□□ 1.13
HDAC6-218ENST00000470942 USP47Q96K76 1375 aa22.08■■□□□ 1.12
HDAC6-218ENST00000470942 NRKQ7Z2Y5 1582 aa22.08■■□□□ 1.12
HDAC6-218ENST00000470942 TTC21BQ7Z4L5 1316 aa22.07■■□□□ 1.12
HDAC6-218ENST00000470942 SSH2Q76I76 1423 aa22.07■■□□□ 1.12
HDAC6-218ENST00000470942 SLC24A1O60721 1099 aa22.07■■□□□ 1.12
HDAC6-218ENST00000470942 CPSF1Q10570 1443 aaKnown RBP22.06■■□□□ 1.12
HDAC6-218ENST00000470942 GCP02774 474 aa22.06■■□□□ 1.12
HDAC6-218ENST00000470942 SLC12A5Q9H2X9 1139 aa22.06■■□□□ 1.12
HDAC6-218ENST00000470942 PIK3C2AO00443 1686 aa22.06■■□□□ 1.12
HDAC6-218ENST00000470942 HDGFL2Q7Z4V5 671 aaPredicted RBP22.05■■□□□ 1.12
HDAC6-218ENST00000470942 PUS7Q96PZ0 661 aaKnown RBP22.05■■□□□ 1.12
HDAC6-218ENST00000470942 MON2Q7Z3U7 1717 aa22.05■■□□□ 1.12
HDAC6-218ENST00000470942 ZBTB7CA1YPR0 619 aa22.04■■□□□ 1.12
HDAC6-218ENST00000470942 STRN4Q9NRL3 753 aa22.04■■□□□ 1.12
HDAC6-218ENST00000470942 TTC21AQ8NDW8 1320 aa22.04■■□□□ 1.12
HDAC6-218ENST00000470942 BRWD3Q6RI45 1802 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 A0A0G2JS52 829 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 EVA1CP58658 441 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 MYT1Q01538 1121 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.02■■□□□ 1.12
HDAC6-218ENST00000470942 SEPT12Q8IYM1 358 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 TERF2IPQ9NYB0 399 aa22.02■■□□□ 1.12
HDAC6-218ENST00000470942 CPDO75976 1380 aa22.01■■□□□ 1.11
HDAC6-218ENST00000470942 TMF1P82094 1093 aa22.01■■□□□ 1.11
HDAC6-218ENST00000470942 CD163L1Q9NR16 1453 aa22.01■■□□□ 1.11
HDAC6-218ENST00000470942 FAM98CQ17RN3 349 aaKnown RBP22■■□□□ 1.11
HDAC6-218ENST00000470942 SPATA31A5Q5VU36 1347 aa22■■□□□ 1.11
HDAC6-218ENST00000470942 SPATA31A7Q8IWB4 1347 aa22■■□□□ 1.11
HDAC6-218ENST00000470942 SLIT3O75094 1523 aa22■■□□□ 1.11
HDAC6-218ENST00000470942 SOX12O15370 315 aa21.98■■□□□ 1.11
HDAC6-218ENST00000470942 ONECUT3O60422 494 aaPredicted RBP21.98■■□□□ 1.11
HDAC6-218ENST00000470942 CAMTA1Q9Y6Y1 1673 aa21.98■■□□□ 1.11
HDAC6-218ENST00000470942 KCNH5Q8NCM2 988 aa21.97■■□□□ 1.11
HDAC6-218ENST00000470942 LMO7Q8WWI1 1683 aa21.97■■□□□ 1.11
HDAC6-218ENST00000470942 A0A1W2PP64 1363 aa21.97■■□□□ 1.11
HDAC6-218ENST00000470942 NME9Q86XW9 330 aa21.96■■□□□ 1.11
HDAC6-218ENST00000470942 ZRANB1Q9UGI0 708 aa21.96■■□□□ 1.11
HDAC6-218ENST00000470942 NINLQ9Y2I6 1382 aa21.96■■□□□ 1.11
HDAC6-218ENST00000470942 SPATA31A1Q5TZJ5 1347 aa21.95■■□□□ 1.1
HDAC6-218ENST00000470942 EDC4Q6P2E9 1401 aaKnown RBP21.95■■□□□ 1.1
HDAC6-218ENST00000470942 CDCA8Q53HL2 280 aa21.94■■□□□ 1.1
HDAC6-218ENST00000470942 USP35Q9P2H5 1018 aa21.94■■□□□ 1.1
HDAC6-218ENST00000470942 LARP1Q6PKG0 1096 aaKnown RBP21.93■■□□□ 1.1
HDAC6-218ENST00000470942 KRT27Q7Z3Y8 459 aa21.93■■□□□ 1.1
HDAC6-218ENST00000470942 AATKQ6ZMQ8 1374 aa21.92■■□□□ 1.1
HDAC6-218ENST00000470942 USP31Q70CQ4 1352 aa21.91■■□□□ 1.1
HDAC6-218ENST00000470942 COL18A1P39060 1754 aa21.9■■□□□ 1.1
HDAC6-218ENST00000470942 RGPD5Q99666 1765 aa21.9■■□□□ 1.1
HDAC6-218ENST00000470942 ARHGEF25Q86VW2 580 aa21.9■■□□□ 1.1
HDAC6-218ENST00000470942 USP54Q70EL1 1684 aa21.9■■□□□ 1.1
HDAC6-218ENST00000470942 COL5A2P05997 1499 aaPredicted RBP21.9■■□□□ 1.1
HDAC6-218ENST00000470942 NFAT5O94916 1531 aa21.89■■□□□ 1.09
HDAC6-218ENST00000470942 EP400Q96L91 3159 aa21.88■■□□□ 1.09
HDAC6-218ENST00000470942 THSD7AQ9UPZ6 1657 aa21.88■■□□□ 1.09
HDAC6-218ENST00000470942 ANKRD36BQ8N2N9 1353 aa21.87■■□□□ 1.09
HDAC6-218ENST00000470942 EIF4G2P78344 907 aaKnown RBP eCLIP21.87■■□□□ 1.092e-9■■■■■ 73
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms