RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
HDAC6-216ENST00000468949 LRRC59Q96AG4 307 aaKnown RBP11.17□□□□□ -0.62
HDAC6-216ENST00000468949 ORAI2Q96SN7 254 aa11.17□□□□□ -0.62
HDAC6-216ENST00000468949 C11orf95C9JLR9 678 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-216ENST00000468949 NGDNQ8NEJ9 315 aaKnown RBP11.16□□□□□ -0.62
HDAC6-216ENST00000468949 ABCA3Q99758 1704 aa11.15□□□□□ -0.62
HDAC6-216ENST00000468949 PRR36Q9H6K5 1346 aa11.15□□□□□ -0.62
HDAC6-216ENST00000468949 MEX3CQ5U5Q3 659 aaKnown RBP11.15□□□□□ -0.62
HDAC6-216ENST00000468949 DDX17Q92841 729 aaKnown RBP11.15□□□□□ -0.62
HDAC6-216ENST00000468949 CABP1Q9NZU7 370 aa11.15□□□□□ -0.62
HDAC6-216ENST00000468949 MARF1Q9Y4F3 1742 aaKnown RBP11.15□□□□□ -0.63
HDAC6-216ENST00000468949 DDX10Q13206 875 aaKnown RBP11.14□□□□□ -0.63
HDAC6-216ENST00000468949 PMFBP1Q8TBY8 1022 aa11.14□□□□□ -0.63
HDAC6-216ENST00000468949 PHF8Q9UPP1 1060 aa11.14□□□□□ -0.63
HDAC6-216ENST00000468949 TRPM3Q9HCF6 1732 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-216ENST00000468949 ANKRD36BQ8N2N9 1353 aa11.14□□□□□ -0.63
HDAC6-216ENST00000468949 MYOM1P52179 1685 aa11.14□□□□□ -0.63
HDAC6-216ENST00000468949 TNS3Q68CZ2 1445 aa11.13□□□□□ -0.63
HDAC6-216ENST00000468949 SLC12A5Q9H2X9 1139 aa11.13□□□□□ -0.63
HDAC6-216ENST00000468949 KTN1Q86UP2 1357 aaKnown RBP11.13□□□□□ -0.63
HDAC6-216ENST00000468949 SOCS7O14512 581 aa11.12□□□□□ -0.63
HDAC6-216ENST00000468949 PANK3Q9H999 370 aa11.12□□□□□ -0.63
HDAC6-216ENST00000468949 KNSTRNQ9Y448 316 aa11.12□□□□□ -0.63
HDAC6-216ENST00000468949 A0A1W2PP64 1363 aa11.12□□□□□ -0.63
HDAC6-216ENST00000468949 ACEP12821 1306 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 ALS2Q96Q42 1657 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 NSD3Q9BZ95 1437 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 PLEKHG3A1L390 1219 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 NUTM2BA6NNL0 878 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-216ENST00000468949 NUTM2EB1AL46 878 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-216ENST00000468949 FOXO3O43524 673 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 PSME1Q06323 249 aa11.11□□□□□ -0.63
HDAC6-216ENST00000468949 NUTM2AQ8IVF1 878 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-216ENST00000468949 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-216ENST00000468949 RGS17Q9UGC6 210 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-216ENST00000468949 CGNL1Q0VF96 1302 aa11.09□□□□□ -0.63
HDAC6-216ENST00000468949 EDC4Q6P2E9 1401 aaKnown RBP11.09□□□□□ -0.63
HDAC6-216ENST00000468949 SBNO1A3KN83 1393 aa11.09□□□□□ -0.63
HDAC6-216ENST00000468949 POLR3AO14802 1390 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-216ENST00000468949 ARHGEF10O15013 1369 aa11.09□□□□□ -0.63
HDAC6-216ENST00000468949 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-216ENST00000468949 XPCQ01831 940 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-216ENST00000468949 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.09□□□□□ -0.63
HDAC6-216ENST00000468949 CRYBG1Q9Y4K1 1723 aa11.09□□□□□ -0.63
HDAC6-216ENST00000468949 USP6P35125 1406 aa11.09□□□□□ -0.63
HDAC6-216ENST00000468949 CNGB1Q14028 1251 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-216ENST00000468949 ZNF772Q68DY9 489 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-216ENST00000468949 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.08□□□□□ -0.64
HDAC6-216ENST00000468949 RNF39Q9H2S5 420 aa11.08□□□□□ -0.64
HDAC6-216ENST00000468949 CPSF1Q10570 1443 aaKnown RBP11.08□□□□□ -0.64
HDAC6-216ENST00000468949 SPATA31A3Q5VYP0 1347 aa11.08□□□□□ -0.64
HDAC6-216ENST00000468949 PLCH1Q4KWH8 1693 aa11.08□□□□□ -0.64
HDAC6-216ENST00000468949 BRD4O60885 1362 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-216ENST00000468949 DIEXFQ68CQ4 756 aaKnown RBP11.07□□□□□ -0.64
HDAC6-216ENST00000468949 LMOD2Q6P5Q4 547 aa11.07□□□□□ -0.64
HDAC6-216ENST00000468949 AFF2P51816 1311 aa11.07□□□□□ -0.64
HDAC6-216ENST00000468949 TTC21AQ8NDW8 1320 aa11.07□□□□□ -0.64
HDAC6-216ENST00000468949 MON2Q7Z3U7 1717 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 CD163L1Q9NR16 1453 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 CDK12Q9NYV4 1490 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-216ENST00000468949 PHRF1Q9P1Y6 1649 aaKnown RBP11.06□□□□□ -0.64
HDAC6-216ENST00000468949 AKAP12Q02952 1782 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 ANP32CO43423 234 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 POTEAQ6S8J7 498 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 KRT28Q7Z3Y7 464 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 C8orf37Q96NL8 207 aa11.06□□□□□ -0.64
HDAC6-216ENST00000468949 NSD2O96028 1365 aa11.05□□□□□ -0.64
HDAC6-216ENST00000468949 ADAMTS2O95450 1211 aa11.05□□□□□ -0.64
HDAC6-216ENST00000468949 NWD2Q9ULI1 1742 aa11.05□□□□□ -0.64
HDAC6-216ENST00000468949 NRKQ7Z2Y5 1582 aa11.04□□□□□ -0.64
HDAC6-216ENST00000468949 CC2D1BQ5T0F9 858 aaKnown RBP11.04□□□□□ -0.64
HDAC6-216ENST00000468949 TTC21BQ7Z4L5 1316 aa11.04□□□□□ -0.64
HDAC6-216ENST00000468949 ABTB2Q8N961 1025 aa11.03□□□□□ -0.64
HDAC6-216ENST00000468949 COG3Q96JB2 828 aa11.03□□□□□ -0.64
HDAC6-216ENST00000468949 CARD14Q9BXL6 1004 aa11.03□□□□□ -0.64
HDAC6-216ENST00000468949 KIF20BQ96Q89 1820 aa11.02□□□□□ -0.64
HDAC6-216ENST00000468949 HAP1P54257 671 aaPredicted RBP11.02□□□□□ -0.65
HDAC6-216ENST00000468949 MORC1Q86VD1 984 aa11.02□□□□□ -0.65
HDAC6-216ENST00000468949 NGLY1Q96IV0 654 aa11.02□□□□□ -0.65
HDAC6-216ENST00000468949 COL14A1Q05707 1796 aaKnown RBP11.02□□□□□ -0.65
HDAC6-216ENST00000468949 RGS12O14924 1447 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 ATRNO75882 1429 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 NRAPQ86VF7 1730 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 SLIT2O94813 1529 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 PLEKHG5O94827 1062 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 NLRP6P59044 892 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 NME9Q86XW9 330 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 GGNBP2Q9H3C7 697 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 NPC1L1Q9UHC9 1359 aa11.01□□□□□ -0.65
HDAC6-216ENST00000468949 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
HDAC6-216ENST00000468949 NUTM2GQ5VZR2 741 aa11□□□□□ -0.65
HDAC6-216ENST00000468949 NLRP13Q86W25 1043 aa11□□□□□ -0.65
HDAC6-216ENST00000468949 BCL9LQ86UU0 1499 aa11□□□□□ -0.65
HDAC6-216ENST00000468949 PER1O15534 1290 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-216ENST00000468949 RALBP1Q15311 655 aa10.99□□□□□ -0.65
HDAC6-216ENST00000468949 FNBP4Q8N3X1 1017 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-216ENST00000468949 SPINK5Q9NQ38 1064 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-216ENST00000468949 ZNF219Q9P2Y4 722 aaPredicted RBP10.99□□□□□ -0.65
HDAC6-216ENST00000468949 USP21Q9UK80 565 aa10.99□□□□□ -0.65
HDAC6-216ENST00000468949 SSH2Q76I76 1423 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 228.8 ms