RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 RGPD8O14715 1765 aaPredicted RBP25.27■■□□□ 1.64
SMC4-209ENST00000468653 TTC21BQ7Z4L5 1316 aa25.26■■□□□ 1.63
SMC4-209ENST00000468653 COG3Q96JB2 828 aa25.26■■□□□ 1.63
SMC4-209ENST00000468653 ZRANB1Q9UGI0 708 aa25.24■■□□□ 1.63
SMC4-209ENST00000468653 SALL2Q9Y467 1007 aaPredicted RBP25.22■■□□□ 1.63
SMC4-209ENST00000468653 NRKQ7Z2Y5 1582 aa25.22■■□□□ 1.63
SMC4-209ENST00000468653 TTC21AQ8NDW8 1320 aa25.2■■□□□ 1.62
SMC4-209ENST00000468653 PHF8Q9UPP1 1060 aa25.2■■□□□ 1.62
SMC4-209ENST00000468653 SSH2Q76I76 1423 aa25.19■■□□□ 1.62
SMC4-209ENST00000468653 SHPRHQ149N8 1683 aa25.18■■□□□ 1.62
SMC4-209ENST00000468653 CCDC146Q8IYE0 955 aa25.18■■□□□ 1.62
SMC4-209ENST00000468653 C19orf44Q9H6X5 657 aa25.18■■□□□ 1.62
SMC4-209ENST00000468653 POLKQ9UBT6 870 aa25.18■■□□□ 1.62
SMC4-209ENST00000468653 ESCO1Q5FWF5 840 aa25.17■■□□□ 1.62
SMC4-209ENST00000468653 NUDCQ9Y266 331 aa25.17■■□□□ 1.62
SMC4-209ENST00000468653 STRCQ7RTU9 1775 aa25.17■■□□□ 1.62
SMC4-209ENST00000468653 AATKQ6ZMQ8 1374 aa25.16■■□□□ 1.62
SMC4-209ENST00000468653 FBLN1P23142 703 aa25.16■■□□□ 1.62
SMC4-209ENST00000468653 PPM1GO15355 546 aaPredicted RBP25.16■■□□□ 1.62
SMC4-209ENST00000468653 TMEM94Q12767 1356 aa25.15■■□□□ 1.62
SMC4-209ENST00000468653 STRCP1A6NGW2 1772 aa25.14■■□□□ 1.61
SMC4-209ENST00000468653 PNPLA6Q8IY17 1366 aa25.13■■□□□ 1.61
SMC4-209ENST00000468653 SMG6Q86US8 1419 aaKnown RBP25.13■■□□□ 1.61
SMC4-209ENST00000468653 NCOA3Q9Y6Q9 1424 aa25.13■■□□□ 1.61
SMC4-209ENST00000468653 U2AF1L5P0DN76 240 aaPredicted RBP25.13■■□□□ 1.61
SMC4-209ENST00000468653 U2AF1Q01081 240 aaKnown RBP eCLIP25.13■■□□□ 1.615e-12■■■■■ 47.2
SMC4-209ENST00000468653 PDE3BQ13370 1112 aa25.13■■□□□ 1.61
SMC4-209ENST00000468653 OVOS2A0A0J9YW53 1432 aa25.12■■□□□ 1.61
SMC4-209ENST00000468653 OVOS2Q6IE36 1432 aa25.12■■□□□ 1.61
SMC4-209ENST00000468653 COL3A1P02461 1466 aaPredicted RBP25.12■■□□□ 1.61
SMC4-209ENST00000468653 DIAPH1O60610 1272 aaKnown RBP25.12■■□□□ 1.61
SMC4-209ENST00000468653 MAP2P11137 1827 aaKnown RBP25.11■■□□□ 1.61
SMC4-209ENST00000468653 U2SURPO15042 1029 aaKnown RBP25.1■■□□□ 1.61
SMC4-209ENST00000468653 ATF3P18847 181 aa25.1■■□□□ 1.61
SMC4-209ENST00000468653 EMILIN1Q9Y6C2 1016 aa25.1■■□□□ 1.61
SMC4-209ENST00000468653 APAF1O14727 1248 aa25.1■■□□□ 1.61
SMC4-209ENST00000468653 PAK3O75914 559 aaPredicted RBP25.09■■□□□ 1.61
SMC4-209ENST00000468653 PSME1Q06323 249 aa25.09■■□□□ 1.61
SMC4-209ENST00000468653 RUNDC1Q96C34 613 aa25.09■■□□□ 1.61
SMC4-209ENST00000468653 RRS1Q15050 365 aaKnown RBP25.08■■□□□ 1.61
SMC4-209ENST00000468653 ORAI2Q96SN7 254 aa25.08■■□□□ 1.61
SMC4-209ENST00000468653 USP31Q70CQ4 1352 aa25.08■■□□□ 1.61
SMC4-209ENST00000468653 SUPT16HQ9Y5B9 1047 aaKnown RBP25.07■■□□□ 1.6
SMC4-209ENST00000468653 NLRP6P59044 892 aa25.06■■□□□ 1.6
SMC4-209ENST00000468653 NGEFQ8N5V2 710 aa25.06■■□□□ 1.6
SMC4-209ENST00000468653 DCCP43146 1447 aa25.06■■□□□ 1.6
SMC4-209ENST00000468653 ABTB2Q8N961 1025 aa25.05■■□□□ 1.6
SMC4-209ENST00000468653 C1orf167Q5SNV9 1468 aa25.05■■□□□ 1.6
SMC4-209ENST00000468653 CDK12Q9NYV4 1490 aaPredicted RBP25.05■■□□□ 1.6
SMC4-209ENST00000468653 NEFLP07196 543 aa25.05■■□□□ 1.6
SMC4-209ENST00000468653 PIK3C2AO00443 1686 aa25.04■■□□□ 1.6
SMC4-209ENST00000468653 SOX12O15370 315 aa25.03■■□□□ 1.6
SMC4-209ENST00000468653 MSH6P52701 1360 aa25.03■■□□□ 1.6
SMC4-209ENST00000468653 ZNF335Q9H4Z2 1342 aaPredicted RBP25.03■■□□□ 1.6
SMC4-209ENST00000468653 FOXO3O43524 673 aa25.03■■□□□ 1.6
SMC4-209ENST00000468653 CADPS2Q86UW7 1296 aa25.03■■□□□ 1.6
SMC4-209ENST00000468653 DMRT2Q9Y5R5 561 aa25.03■■□□□ 1.6
SMC4-209ENST00000468653 NUTM2GQ5VZR2 741 aa25.02■■□□□ 1.6
SMC4-209ENST00000468653 CDCA7LQ96GN5 454 aa25.02■■□□□ 1.6
SMC4-209ENST00000468653 TCP11L2Q8N4U5 519 aa25■■□□□ 1.59
SMC4-209ENST00000468653 PNNQ9H307 717 aaKnown RBP25■■□□□ 1.59
SMC4-209ENST00000468653 MST1RQ04912 1400 aa25■■□□□ 1.59
SMC4-209ENST00000468653 ZNF521Q96K83 1311 aa25■■□□□ 1.59
SMC4-209ENST00000468653 IL13P35225 146 aa24.99■■□□□ 1.59
SMC4-209ENST00000468653 GOLGA2Q08379 1002 aa24.98■■□□□ 1.59
SMC4-209ENST00000468653 KIF1AQ12756 1690 aa24.98■■□□□ 1.59
SMC4-209ENST00000468653 LRRC7Q96NW7 1537 aa24.97■■□□□ 1.59
SMC4-209ENST00000468653 FCHSD2O94868 740 aa24.96■■□□□ 1.59
SMC4-209ENST00000468653 XPCQ01831 940 aaPredicted RBP24.96■■□□□ 1.59
SMC4-209ENST00000468653 FKBP8Q14318 412 aa24.96■■□□□ 1.59
SMC4-209ENST00000468653 NEUROD2Q15784 382 aa24.96■■□□□ 1.59
SMC4-209ENST00000468653 RRP7AQ9Y3A4 280 aaKnown RBP24.96■■□□□ 1.59
SMC4-209ENST00000468653 IQSEC2Q5JU85 1478 aa24.96■■□□□ 1.59
SMC4-209ENST00000468653 MAPK8IP3Q9UPT6 1336 aa24.96■■□□□ 1.59
SMC4-209ENST00000468653 PLEKHF1Q96S99 279 aa24.95■■□□□ 1.59
SMC4-209ENST00000468653 MAP3K19Q56UN5 1328 aa24.95■■□□□ 1.59
SMC4-209ENST00000468653 KRT28Q7Z3Y7 464 aa24.95■■□□□ 1.58
SMC4-209ENST00000468653 USP54Q70EL1 1684 aa24.94■■□□□ 1.58
SMC4-209ENST00000468653 XIRP1Q702N8 1843 aaKnown RBP24.93■■□□□ 1.58
SMC4-209ENST00000468653 NEFMP07197 916 aa24.93■■□□□ 1.58
SMC4-209ENST00000468653 AMPHP49418 695 aa24.93■■□□□ 1.58
SMC4-209ENST00000468653 SBNO1A3KN83 1393 aa24.92■■□□□ 1.58
SMC4-209ENST00000468653 WWC1Q8IX03 1113 aa24.92■■□□□ 1.58
SMC4-209ENST00000468653 EIF4A2Q14240 407 aaKnown RBP24.91■■□□□ 1.58
SMC4-209ENST00000468653 NCBP3Q53F19 620 aaKnown RBP24.91■■□□□ 1.58
SMC4-209ENST00000468653 HSP90AB2PQ58FF8 381 aa24.91■■□□□ 1.58
SMC4-209ENST00000468653 RSPH6AQ9H0K4 717 aa24.91■■□□□ 1.58
SMC4-209ENST00000468653 MARF1Q9Y4F3 1742 aaKnown RBP24.91■■□□□ 1.58
SMC4-209ENST00000468653 FLT4P35916 1363 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 HMOX1P09601 288 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 PEAK1Q9H792 1746 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 PRKAR2BP31323 418 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 SLFN5Q08AF3 891 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 CCDC27Q2M243 656 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 LMOD2Q6P5Q4 547 aa24.9■■□□□ 1.58
SMC4-209ENST00000468653 E9PSI1 815 aa24.88■■□□□ 1.57
SMC4-209ENST00000468653 TMPOP42166 694 aaKnown RBP24.88■■□□□ 1.57
SMC4-209ENST00000468653 DUSP27Q5VZP5 1158 aa24.88■■□□□ 1.57
SMC4-209ENST00000468653 KCNH5Q8NCM2 988 aa24.88■■□□□ 1.57
SMC4-209ENST00000468653 PHF23Q9BUL5 403 aaPredicted RBP24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms