RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 COL14A1Q05707 1796 aaKnown RBP35.49■■■■□ 3.27
PTCH1-210ENST00000468211 CCDC9Q9Y3X0 531 aaKnown RBP35.48■■■■□ 3.27
PTCH1-210ENST00000468211 SEPT12Q8IYM1 358 aa35.47■■■■□ 3.27
PTCH1-210ENST00000468211 BTG4Q9NY30 223 aa35.45■■■■□ 3.27
PTCH1-210ENST00000468211 ONECUT3O60422 494 aaPredicted RBP35.43■■■■□ 3.26
PTCH1-210ENST00000468211 L3MBTL2Q969R5 705 aa35.43■■■■□ 3.26
PTCH1-210ENST00000468211 POLR3AO14802 1390 aaPredicted RBP35.42■■■■□ 3.26
PTCH1-210ENST00000468211 SIN3AQ96ST3 1273 aa35.42■■■■□ 3.26
PTCH1-210ENST00000468211 PHRF1Q9P1Y6 1649 aaKnown RBP35.42■■■■□ 3.26
PTCH1-210ENST00000468211 ACEP12821 1306 aa35.41■■■■□ 3.26
PTCH1-210ENST00000468211 QRICH2Q9H0J4 1663 aa35.4■■■■□ 3.26
PTCH1-210ENST00000468211 CCDC125Q86Z20 511 aa35.4■■■■□ 3.26
PTCH1-210ENST00000468211 CCDC61Q9Y6R9 512 aa35.4■■■■□ 3.26
PTCH1-210ENST00000468211 NBPF8Q3BBV2 869 aa35.38■■■■□ 3.25
PTCH1-210ENST00000468211 CENPJQ9HC77 1338 aaPredicted RBP35.37■■■■□ 3.25
PTCH1-210ENST00000468211 PLEKHG3A1L390 1219 aa35.37■■■■□ 3.25
PTCH1-210ENST00000468211 NUTM2GQ5VZR2 741 aa35.37■■■■□ 3.25
PTCH1-210ENST00000468211 TRPM1Q7Z4N2 1603 aa35.35■■■■□ 3.25
PTCH1-210ENST00000468211 BLMP54132 1417 aaPredicted RBP35.33■■■■□ 3.25
PTCH1-210ENST00000468211 FAM98CQ17RN3 349 aaKnown RBP35.33■■■■□ 3.25
PTCH1-210ENST00000468211 PRDM11Q9NQV5 511 aa35.33■■■■□ 3.25
PTCH1-210ENST00000468211 KIAA0232Q92628 1395 aa35.33■■■■□ 3.25
PTCH1-210ENST00000468211 CABP2Q9NPB3 220 aa35.32■■■■□ 3.24
PTCH1-210ENST00000468211 SRPK2P78362 688 aaKnown RBP35.31■■■■□ 3.24
PTCH1-210ENST00000468211 KRT27Q7Z3Y8 459 aa35.31■■■■□ 3.24
PTCH1-210ENST00000468211 CHRNA2Q15822 529 aa35.3■■■■□ 3.24
PTCH1-210ENST00000468211 PPIP5K1Q6PFW1 1433 aa35.3■■■■□ 3.24
PTCH1-210ENST00000468211 NEUROD1Q13562 356 aa35.29■■■■□ 3.24
PTCH1-210ENST00000468211 SPATA31A5Q5VU36 1347 aa35.29■■■■□ 3.24
PTCH1-210ENST00000468211 SPATA31A7Q8IWB4 1347 aa35.29■■■■□ 3.24
PTCH1-210ENST00000468211 A0A0G2JS52 829 aa35.28■■■■□ 3.24
PTCH1-210ENST00000468211 MYT1Q01538 1121 aa35.28■■■■□ 3.24
PTCH1-210ENST00000468211 ZC3H6P61129 1189 aaKnown RBP35.27■■■■□ 3.24
PTCH1-210ENST00000468211 NRKQ7Z2Y5 1582 aa35.26■■■■□ 3.24
PTCH1-210ENST00000468211 DEFB132Q7Z7B7 95 aa35.26■■■■□ 3.24
PTCH1-210ENST00000468211 THSD7AQ9UPZ6 1657 aa35.24■■■■□ 3.23
PTCH1-210ENST00000468211 ABTB2Q8N961 1025 aa35.23■■■■□ 3.23
PTCH1-210ENST00000468211 ZRANB1Q9UGI0 708 aa35.23■■■■□ 3.23
PTCH1-210ENST00000468211 SRCAPQ6ZRS2 3230 aa35.22■■■■□ 3.23
PTCH1-210ENST00000468211 USP19O94966 1318 aa35.19■■■■□ 3.22
PTCH1-210ENST00000468211 STRN4Q9NRL3 753 aa35.19■■■■□ 3.22
PTCH1-210ENST00000468211 SPATA31A1Q5TZJ5 1347 aa35.18■■■■□ 3.22
PTCH1-210ENST00000468211 FAM182BQ5T319 152 aa35.18■■■■□ 3.22
PTCH1-210ENST00000468211 CABP1Q9NZU7 370 aa35.18■■■■□ 3.22
PTCH1-210ENST00000468211 LMO7Q8WWI1 1683 aa35.17■■■■□ 3.22
PTCH1-210ENST00000468211 CAMTA1Q9Y6Y1 1673 aa35.17■■■■□ 3.22
PTCH1-210ENST00000468211 ROCK2O75116 1388 aaKnown RBP35.16■■■■□ 3.22
PTCH1-210ENST00000468211 SF3B2Q13435 895 aaKnown RBP35.15■■■■□ 3.22
PTCH1-210ENST00000468211 USP6P35125 1406 aa35.14■■■■□ 3.22
PTCH1-210ENST00000468211 CPDO75976 1380 aa35.13■■■■□ 3.21
PTCH1-210ENST00000468211 NLRP13Q86W25 1043 aa35.11■■■■□ 3.21
PTCH1-210ENST00000468211 SSH2Q76I76 1423 aa35.11■■■■□ 3.21
PTCH1-210ENST00000468211 EVC2Q86UK5 1308 aa35.1■■■■□ 3.21
PTCH1-210ENST00000468211 GCP02774 474 aa35.1■■■■□ 3.21
PTCH1-210ENST00000468211 BRD4O60885 1362 aaPredicted RBP35.1■■■■□ 3.21
PTCH1-210ENST00000468211 RGPD1P0DJD0 1748 aa35.09■■■■□ 3.21
PTCH1-210ENST00000468211 PIK3C2AO00443 1686 aa35.08■■■■□ 3.21
PTCH1-210ENST00000468211 EVA1CP58658 441 aa35.07■■■■□ 3.2
PTCH1-210ENST00000468211 USP35Q9P2H5 1018 aa35.07■■■■□ 3.2
PTCH1-210ENST00000468211 AKAP12Q02952 1782 aa35.06■■■■□ 3.2
PTCH1-210ENST00000468211 LARP1Q6PKG0 1096 aaKnown RBP35.06■■■■□ 3.2
PTCH1-210ENST00000468211 TNS1Q9HBL0 1735 aaKnown RBP35.05■■■■□ 3.2
PTCH1-210ENST00000468211 SLIT3O75094 1523 aa35.04■■■■□ 3.2
PTCH1-210ENST00000468211 NLRP6P59044 892 aa35.03■■■■□ 3.2
PTCH1-210ENST00000468211 BAG6P46379 1132 aa35.01■■■■□ 3.2
PTCH1-210ENST00000468211 COL5A2P05997 1499 aaPredicted RBP35■■■■□ 3.19
PTCH1-210ENST00000468211 BARGINQ6ZT62 677 aa34.99■■■■□ 3.19
PTCH1-210ENST00000468211 COL18A1P39060 1754 aa34.97■■■■□ 3.19
PTCH1-210ENST00000468211 ZBTB7CA1YPR0 619 aa34.97■■■■□ 3.19
PTCH1-210ENST00000468211 EN1Q05925 392 aaPredicted RBP34.97■■■■□ 3.19
PTCH1-210ENST00000468211 TCP11L2Q8N4U5 519 aa34.95■■■■□ 3.19
PTCH1-210ENST00000468211 TTC21BQ7Z4L5 1316 aa34.94■■■■□ 3.18
PTCH1-210ENST00000468211 CPSF1Q10570 1443 aaKnown RBP34.93■■■■□ 3.18
PTCH1-210ENST00000468211 AATKQ6ZMQ8 1374 aa34.92■■■■□ 3.18
PTCH1-210ENST00000468211 ZNF692Q9BU19 519 aaPredicted RBP34.92■■■■□ 3.18
PTCH1-210ENST00000468211 CARD11Q9BXL7 1154 aa34.92■■■■□ 3.18
PTCH1-210ENST00000468211 RGPD5Q99666 1765 aa34.92■■■■□ 3.18
PTCH1-210ENST00000468211 DISP2A7MBM2 1401 aa34.91■■■■□ 3.18
PTCH1-210ENST00000468211 TRIM37O94972 964 aa34.91■■■■□ 3.18
PTCH1-210ENST00000468211 FAM196AQ6ZSG2 479 aa34.91■■■■□ 3.18
PTCH1-210ENST00000468211 MON2Q7Z3U7 1717 aa34.91■■■■□ 3.18
PTCH1-210ENST00000468211 PARP4Q9UKK3 1724 aaKnown RBP34.91■■■■□ 3.18
PTCH1-210ENST00000468211 SBNO2Q9Y2G9 1366 aa34.9■■■■□ 3.18
PTCH1-210ENST00000468211 CRB1P82279 1406 aa34.89■■■■□ 3.18
PTCH1-210ENST00000468211 PSDA5PKW4 1024 aaPredicted RBP34.88■■■■□ 3.17
PTCH1-210ENST00000468211 PDE3BQ13370 1112 aa34.88■■■■□ 3.17
PTCH1-210ENST00000468211 TONSLQ96HA7 1378 aa34.87■■■■□ 3.17
PTCH1-210ENST00000468211 AXIN2Q9Y2T1 843 aa34.87■■■■□ 3.17
PTCH1-210ENST00000468211 THRAP3Q9Y2W1 955 aaKnown RBP34.87■■■■□ 3.17
PTCH1-210ENST00000468211 KTN1Q86UP2 1357 aaKnown RBP34.87■■■■□ 3.17
PTCH1-210ENST00000468211 EZH2Q15910 746 aaKnown RBP34.85■■■■□ 3.17
PTCH1-210ENST00000468211 TTC21AQ8NDW8 1320 aa34.84■■■■□ 3.17
PTCH1-210ENST00000468211 SOX12O15370 315 aa34.83■■■■□ 3.17
PTCH1-210ENST00000468211 CD163L1Q9NR16 1453 aa34.83■■■■□ 3.17
PTCH1-210ENST00000468211 NFAT5O94916 1531 aa34.82■■■■□ 3.16
PTCH1-210ENST00000468211 ARHGEF25Q86VW2 580 aa34.82■■■■□ 3.16
PTCH1-210ENST00000468211 WNK3Q9BYP7 1800 aa34.82■■■■□ 3.16
PTCH1-210ENST00000468211 CAMKK2Q96RR4 588 aa34.81■■■■□ 3.16
PTCH1-210ENST00000468211 LRRC37A3O60309 1634 aa34.81■■■■□ 3.16
PTCH1-210ENST00000468211 LRP5O75197 1615 aa34.8■■■■□ 3.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms