RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NUDT16Q96DE0 195 aaKnown RBP30.62■■■□□ 2.49
COL9A3-207ENST00000467819 TOPAZ1Q8N9V7 1692 aa30.61■■■□□ 2.49
COL9A3-207ENST00000467819 BTG4Q9NY30 223 aa30.59■■■□□ 2.49
COL9A3-207ENST00000467819 CDK19Q9BWU1 502 aa30.57■■■□□ 2.48
COL9A3-207ENST00000467819 BLMP54132 1417 aaPredicted RBP30.56■■■□□ 2.48
COL9A3-207ENST00000467819 PHRF1Q9P1Y6 1649 aaKnown RBP30.56■■■□□ 2.48
COL9A3-207ENST00000467819 A0A0G2JS52 829 aa30.55■■■□□ 2.48
COL9A3-207ENST00000467819 MYT1Q01538 1121 aa30.55■■■□□ 2.48
COL9A3-207ENST00000467819 NBPF1Q3BBV0 1214 aa30.55■■■□□ 2.48
COL9A3-207ENST00000467819 ONECUT3O60422 494 aaPredicted RBP30.54■■■□□ 2.48
COL9A3-207ENST00000467819 ZRANB1Q9UGI0 708 aa30.54■■■□□ 2.48
COL9A3-207ENST00000467819 KRT27Q7Z3Y8 459 aa30.52■■■□□ 2.48
COL9A3-207ENST00000467819 SRCAPQ6ZRS2 3230 aa30.51■■■□□ 2.48
COL9A3-207ENST00000467819 FAM98CQ17RN3 349 aaKnown RBP30.51■■■□□ 2.47
COL9A3-207ENST00000467819 PRDM11Q9NQV5 511 aa30.5■■■□□ 2.47
COL9A3-207ENST00000467819 QRICH2Q9H0J4 1663 aa30.49■■■□□ 2.47
COL9A3-207ENST00000467819 ACEP12821 1306 aa30.48■■■□□ 2.47
COL9A3-207ENST00000467819 POLR3AO14802 1390 aaPredicted RBP30.48■■■□□ 2.47
COL9A3-207ENST00000467819 SF3B2Q13435 895 aaKnown RBP30.47■■■□□ 2.47
COL9A3-207ENST00000467819 NUTM2GQ5VZR2 741 aa30.47■■■□□ 2.47
COL9A3-207ENST00000467819 DEFB132Q7Z7B7 95 aa30.47■■■□□ 2.47
COL9A3-207ENST00000467819 CCDC61Q9Y6R9 512 aa30.47■■■□□ 2.47
COL9A3-207ENST00000467819 KIAA0232Q92628 1395 aa30.46■■■□□ 2.47
COL9A3-207ENST00000467819 NBPF8Q3BBV2 869 aa30.45■■■□□ 2.47
COL9A3-207ENST00000467819 CHRNA2Q15822 529 aa30.44■■■□□ 2.46
COL9A3-207ENST00000467819 SPATA31A5Q5VU36 1347 aa30.44■■■□□ 2.46
COL9A3-207ENST00000467819 SPATA31A7Q8IWB4 1347 aa30.44■■■□□ 2.46
COL9A3-207ENST00000467819 CENPJQ9HC77 1338 aaPredicted RBP30.44■■■□□ 2.46
COL9A3-207ENST00000467819 PLEKHG3A1L390 1219 aa30.42■■■□□ 2.46
COL9A3-207ENST00000467819 SRPK2P78362 688 aaKnown RBP30.42■■■□□ 2.46
COL9A3-207ENST00000467819 THSD7AQ9UPZ6 1657 aa30.42■■■□□ 2.46
COL9A3-207ENST00000467819 ZC3H6P61129 1189 aaKnown RBP30.41■■■□□ 2.46
COL9A3-207ENST00000467819 NRKQ7Z2Y5 1582 aa30.41■■■□□ 2.46
COL9A3-207ENST00000467819 PPIP5K1Q6PFW1 1433 aa30.4■■■□□ 2.46
COL9A3-207ENST00000467819 TRPM1Q7Z4N2 1603 aa30.38■■■□□ 2.45
COL9A3-207ENST00000467819 L3MBTL2Q969R5 705 aa30.38■■■□□ 2.45
COL9A3-207ENST00000467819 CABP2Q9NPB3 220 aa30.38■■■□□ 2.45
COL9A3-207ENST00000467819 STRN4Q9NRL3 753 aa30.38■■■□□ 2.45
COL9A3-207ENST00000467819 RGPD1P0DJD0 1748 aa30.38■■■□□ 2.45
COL9A3-207ENST00000467819 ABTB2Q8N961 1025 aa30.36■■■□□ 2.45
COL9A3-207ENST00000467819 FAM182BQ5T319 152 aa30.35■■■□□ 2.45
COL9A3-207ENST00000467819 SIN3AQ96ST3 1273 aa30.35■■■□□ 2.45
COL9A3-207ENST00000467819 SPATA31A1Q5TZJ5 1347 aa30.34■■■□□ 2.45
COL9A3-207ENST00000467819 BAG6P46379 1132 aa30.31■■■□□ 2.44
COL9A3-207ENST00000467819 LMO7Q8WWI1 1683 aa30.3■■■□□ 2.44
COL9A3-207ENST00000467819 USP19O94966 1318 aa30.3■■■□□ 2.44
COL9A3-207ENST00000467819 NEUROD1Q13562 356 aa30.3■■■□□ 2.44
COL9A3-207ENST00000467819 TNS1Q9HBL0 1735 aaKnown RBP30.3■■■□□ 2.44
COL9A3-207ENST00000467819 CAMTA1Q9Y6Y1 1673 aa30.29■■■□□ 2.44
COL9A3-207ENST00000467819 SSH2Q76I76 1423 aa30.29■■■□□ 2.44
COL9A3-207ENST00000467819 EVA1CP58658 441 aa30.28■■■□□ 2.44
COL9A3-207ENST00000467819 USP35Q9P2H5 1018 aa30.28■■■□□ 2.44
COL9A3-207ENST00000467819 NLRP13Q86W25 1043 aa30.27■■■□□ 2.44
COL9A3-207ENST00000467819 CABP1Q9NZU7 370 aa30.26■■■□□ 2.43
COL9A3-207ENST00000467819 CPDO75976 1380 aa30.26■■■□□ 2.43
COL9A3-207ENST00000467819 USP6P35125 1406 aa30.25■■■□□ 2.43
COL9A3-207ENST00000467819 ROCK2O75116 1388 aaKnown RBP30.24■■■□□ 2.43
COL9A3-207ENST00000467819 GCP02774 474 aa30.23■■■□□ 2.43
COL9A3-207ENST00000467819 BRD4O60885 1362 aaPredicted RBP30.23■■■□□ 2.43
COL9A3-207ENST00000467819 EVC2Q86UK5 1308 aa30.22■■■□□ 2.43
COL9A3-207ENST00000467819 EN1Q05925 392 aaPredicted RBP30.22■■■□□ 2.43
COL9A3-207ENST00000467819 LARP1Q6PKG0 1096 aaKnown RBP30.22■■■□□ 2.43
COL9A3-207ENST00000467819 PIK3C2AO00443 1686 aa30.22■■■□□ 2.43
COL9A3-207ENST00000467819 AKAP12Q02952 1782 aa30.2■■■□□ 2.42
COL9A3-207ENST00000467819 ZBTB7CA1YPR0 619 aa30.19■■■□□ 2.42
COL9A3-207ENST00000467819 PSDA5PKW4 1024 aaPredicted RBP30.18■■■□□ 2.42
COL9A3-207ENST00000467819 NLRP6P59044 892 aa30.18■■■□□ 2.42
COL9A3-207ENST00000467819 BARGINQ6ZT62 677 aa30.18■■■□□ 2.42
COL9A3-207ENST00000467819 SLIT3O75094 1523 aa30.17■■■□□ 2.42
COL9A3-207ENST00000467819 COL5A2P05997 1499 aaPredicted RBP30.17■■■□□ 2.42
COL9A3-207ENST00000467819 DISP2A7MBM2 1401 aa30.16■■■□□ 2.42
COL9A3-207ENST00000467819 FAM196AQ6ZSG2 479 aa30.16■■■□□ 2.42
COL9A3-207ENST00000467819 LRP5O75197 1615 aa30.15■■■□□ 2.42
COL9A3-207ENST00000467819 TRIM37O94972 964 aa30.15■■■□□ 2.42
COL9A3-207ENST00000467819 TCP11L2Q8N4U5 519 aa30.15■■■□□ 2.42
COL9A3-207ENST00000467819 PDE3BQ13370 1112 aa30.14■■■□□ 2.42
COL9A3-207ENST00000467819 PARP4Q9UKK3 1724 aaKnown RBP30.13■■■□□ 2.41
COL9A3-207ENST00000467819 COL18A1P39060 1754 aa30.11■■■□□ 2.41
COL9A3-207ENST00000467819 EZH2Q15910 746 aaKnown RBP30.1■■■□□ 2.41
COL9A3-207ENST00000467819 THRAP3Q9Y2W1 955 aaKnown RBP30.1■■■□□ 2.41
COL9A3-207ENST00000467819 RGPD5Q99666 1765 aa30.1■■■□□ 2.41
COL9A3-207ENST00000467819 CRB1P82279 1406 aa30.09■■■□□ 2.41
COL9A3-207ENST00000467819 AATKQ6ZMQ8 1374 aa30.08■■■□□ 2.41
COL9A3-207ENST00000467819 TTC21BQ7Z4L5 1316 aa30.07■■■□□ 2.4
COL9A3-207ENST00000467819 WNK3Q9BYP7 1800 aa30.06■■■□□ 2.4
COL9A3-207ENST00000467819 MON2Q7Z3U7 1717 aa30.06■■■□□ 2.4
COL9A3-207ENST00000467819 APBA3O96018 575 aa30.06■■■□□ 2.4
COL9A3-207ENST00000467819 ZNF692Q9BU19 519 aaPredicted RBP30.06■■■□□ 2.4
COL9A3-207ENST00000467819 RREB1Q92766 1687 aa30.05■■■□□ 2.4
COL9A3-207ENST00000467819 R3HDM1Q15032 1099 aaKnown RBP30.05■■■□□ 2.4
COL9A3-207ENST00000467819 CAMKK2Q96RR4 588 aa30.04■■■□□ 2.4
COL9A3-207ENST00000467819 CPSF1Q10570 1443 aaKnown RBP30.04■■■□□ 2.4
COL9A3-207ENST00000467819 LRRC37A3O60309 1634 aa30.04■■■□□ 2.4
COL9A3-207ENST00000467819 SOX12O15370 315 aa30.03■■■□□ 2.4
COL9A3-207ENST00000467819 KTN1Q86UP2 1357 aaKnown RBP30.03■■■□□ 2.4
COL9A3-207ENST00000467819 NUP188Q5SRE5 1749 aa30.02■■■□□ 2.4
COL9A3-207ENST00000467819 TTC21AQ8NDW8 1320 aa30.01■■■□□ 2.4
COL9A3-207ENST00000467819 TOM1L2Q6ZVM7 507 aa30.01■■■□□ 2.39
COL9A3-207ENST00000467819 CARD11Q9BXL7 1154 aa30.01■■■□□ 2.39
COL9A3-207ENST00000467819 PEAK1Q9H792 1746 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms