RNA–Protein interactions for RNA: ENST00000463916.5

XRN1-203, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 1 (best) BASIC

Gene XRN1, Length 2,075 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-203ENST00000463916 ABCA3Q99758 1704 aa18.44■□□□□ 0.54
XRN1-203ENST00000463916 RBM6P78332 1123 aaKnown RBP18.43■□□□□ 0.54
XRN1-203ENST00000463916 NUTM2GQ5VZR2 741 aa18.42■□□□□ 0.54
XRN1-203ENST00000463916 CLSPNQ9HAW4 1339 aa18.42■□□□□ 0.54
XRN1-203ENST00000463916 TRPC5Q9UL62 973 aaPredicted RBP18.42■□□□□ 0.54
XRN1-203ENST00000463916 SLIT2O94813 1529 aa18.41■□□□□ 0.54
XRN1-203ENST00000463916 FAM83GA6ND36 823 aa18.41■□□□□ 0.54
XRN1-203ENST00000463916 ATRNO75882 1429 aa18.41■□□□□ 0.54
XRN1-203ENST00000463916 SBNO2Q9Y2G9 1366 aa18.4■□□□□ 0.54
XRN1-203ENST00000463916 CRYBG1Q9Y4K1 1723 aa18.39■□□□□ 0.54
XRN1-203ENST00000463916 UNC5CLQ8IV45 518 aa18.38■□□□□ 0.53
XRN1-203ENST00000463916 CDK12Q9NYV4 1490 aaPredicted RBP18.38■□□□□ 0.53
XRN1-203ENST00000463916 RGS12O14924 1447 aa18.38■□□□□ 0.53
XRN1-203ENST00000463916 ST20-MTHFSA0A0A6YYL1 179 aa18.38■□□□□ 0.53
XRN1-203ENST00000463916 ABTB2Q8N961 1025 aa18.37■□□□□ 0.53
XRN1-203ENST00000463916 CCER1Q8TC90 406 aaPredicted RBP18.37■□□□□ 0.53
XRN1-203ENST00000463916 TESK2Q96S53 571 aa18.37■□□□□ 0.53
XRN1-203ENST00000463916 USP6P35125 1406 aa18.36■□□□□ 0.53
XRN1-203ENST00000463916 TIMELESSQ9UNS1 1208 aa18.36■□□□□ 0.53
XRN1-203ENST00000463916 GJD4Q96KN9 370 aaPredicted RBP18.35■□□□□ 0.53
XRN1-203ENST00000463916 PLCH1Q4KWH8 1693 aa18.35■□□□□ 0.53
XRN1-203ENST00000463916 SSH2Q76I76 1423 aa18.35■□□□□ 0.53
XRN1-203ENST00000463916 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.34■□□□□ 0.53
XRN1-203ENST00000463916 ATAD2Q6PL18 1390 aa18.34■□□□□ 0.53
XRN1-203ENST00000463916 EP400Q96L91 3159 aa18.33■□□□□ 0.53
XRN1-203ENST00000463916 BTG4Q9NY30 223 aa18.33■□□□□ 0.52
XRN1-203ENST00000463916 PHRF1Q9P1Y6 1649 aaKnown RBP18.33■□□□□ 0.52
XRN1-203ENST00000463916 KIAA0232Q92628 1395 aa18.32■□□□□ 0.52
XRN1-203ENST00000463916 ZC3H6P61129 1189 aaKnown RBP18.32■□□□□ 0.52
XRN1-203ENST00000463916 CPSF1Q10570 1443 aaKnown RBP18.32■□□□□ 0.52
XRN1-203ENST00000463916 NWD2Q9ULI1 1742 aa18.32■□□□□ 0.52
XRN1-203ENST00000463916 GLI3P10071 1580 aa18.31■□□□□ 0.52
XRN1-203ENST00000463916 USP19O94966 1318 aa18.31■□□□□ 0.52
XRN1-203ENST00000463916 CHRNA2Q15822 529 aa18.31■□□□□ 0.52
XRN1-203ENST00000463916 PRDM11Q9NQV5 511 aa18.31■□□□□ 0.52
XRN1-203ENST00000463916 BRD4O60885 1362 aaPredicted RBP18.31■□□□□ 0.52
XRN1-203ENST00000463916 USP47Q96K76 1375 aa18.31■□□□□ 0.52
XRN1-203ENST00000463916 VPS72Q15906 364 aa18.3■□□□□ 0.52
XRN1-203ENST00000463916 ZNF692Q9BU19 519 aaPredicted RBP18.3■□□□□ 0.52
XRN1-203ENST00000463916 SLC12A5Q9H2X9 1139 aa18.3■□□□□ 0.52
XRN1-203ENST00000463916 COL14A1Q05707 1796 aaKnown RBP18.3■□□□□ 0.52
XRN1-203ENST00000463916 NLRP13Q86W25 1043 aa18.3■□□□□ 0.52
XRN1-203ENST00000463916 AKAP12Q02952 1782 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 TTC21BQ7Z4L5 1316 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 CD163L1Q9NR16 1453 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 TMC1Q8TDI8 760 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 NRAPQ86VF7 1730 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 GCP02774 474 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 NLRP6P59044 892 aa18.29■□□□□ 0.52
XRN1-203ENST00000463916 UPF1Q92900 1129 aaKnown RBP eCLIP18.29■□□□□ 0.52
XRN1-203ENST00000463916 NRKQ7Z2Y5 1582 aa18.28■□□□□ 0.52
XRN1-203ENST00000463916 PIK3C2AO00443 1686 aa18.28■□□□□ 0.52
XRN1-203ENST00000463916 KTN1Q86UP2 1357 aaKnown RBP18.28■□□□□ 0.52
XRN1-203ENST00000463916 CCDC9Q9Y3X0 531 aaKnown RBP18.27■□□□□ 0.52
XRN1-203ENST00000463916 PUS7Q96PZ0 661 aaKnown RBP18.26■□□□□ 0.51
XRN1-203ENST00000463916 CPDO75976 1380 aa18.24■□□□□ 0.51
XRN1-203ENST00000463916 MON2Q7Z3U7 1717 aa18.24■□□□□ 0.51
XRN1-203ENST00000463916 ONECUT3O60422 494 aaPredicted RBP18.24■□□□□ 0.51
XRN1-203ENST00000463916 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.24■□□□□ 0.51
XRN1-203ENST00000463916 ZRANB1Q9UGI0 708 aa18.24■□□□□ 0.51
XRN1-203ENST00000463916 TTC21AQ8NDW8 1320 aa18.23■□□□□ 0.51
XRN1-203ENST00000463916 SLIT3O75094 1523 aa18.23■□□□□ 0.51
XRN1-203ENST00000463916 CAMTA1Q9Y6Y1 1673 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 A0A1W2PP64 1363 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 SEPT12Q8IYM1 358 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 STRN4Q9NRL3 753 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 SPATA31A5Q5VU36 1347 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 SPATA31A7Q8IWB4 1347 aa18.22■□□□□ 0.51
XRN1-203ENST00000463916 SLC24A1O60721 1099 aa18.21■□□□□ 0.51
XRN1-203ENST00000463916 TMF1P82094 1093 aa18.21■□□□□ 0.51
XRN1-203ENST00000463916 FAM98CQ17RN3 349 aaKnown RBP18.21■□□□□ 0.51
XRN1-203ENST00000463916 HDGFL2Q7Z4V5 671 aaPredicted RBP18.21■□□□□ 0.51
XRN1-203ENST00000463916 NME9Q86XW9 330 aa18.21■□□□□ 0.51
XRN1-203ENST00000463916 LMO7Q8WWI1 1683 aa18.2■□□□□ 0.5
XRN1-203ENST00000463916 TERF2IPQ9NYB0 399 aa18.2■□□□□ 0.5
XRN1-203ENST00000463916 ZBTB7CA1YPR0 619 aa18.19■□□□□ 0.5
XRN1-203ENST00000463916 SOX12O15370 315 aa18.19■□□□□ 0.5
XRN1-203ENST00000463916 BRWD3Q6RI45 1802 aa18.19■□□□□ 0.5
XRN1-203ENST00000463916 EVA1CP58658 441 aa18.18■□□□□ 0.5
XRN1-203ENST00000463916 SPATA31A1Q5TZJ5 1347 aa18.18■□□□□ 0.5
XRN1-203ENST00000463916 EDC4Q6P2E9 1401 aaKnown RBP18.18■□□□□ 0.5
XRN1-203ENST00000463916 LARP1Q6PKG0 1096 aaKnown RBP18.18■□□□□ 0.5
XRN1-203ENST00000463916 AXIN2Q9Y2T1 843 aa18.17■□□□□ 0.5
XRN1-203ENST00000463916 USP31Q70CQ4 1352 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 NINLQ9Y2I6 1382 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 ARHGEF25Q86VW2 580 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 USP35Q9P2H5 1018 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 AATKQ6ZMQ8 1374 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 KCNH5Q8NCM2 988 aa18.16■□□□□ 0.5
XRN1-203ENST00000463916 A0A0G2JS52 829 aa18.15■□□□□ 0.5
XRN1-203ENST00000463916 MYT1Q01538 1121 aa18.15■□□□□ 0.5
XRN1-203ENST00000463916 NFAT5O94916 1531 aa18.15■□□□□ 0.5
XRN1-203ENST00000463916 COL5A2P05997 1499 aaPredicted RBP18.15■□□□□ 0.5
XRN1-203ENST00000463916 COL18A1P39060 1754 aa18.14■□□□□ 0.5
XRN1-203ENST00000463916 KRT27Q7Z3Y8 459 aa18.13■□□□□ 0.49
XRN1-203ENST00000463916 ANKRD36BQ8N2N9 1353 aa18.13■□□□□ 0.49
XRN1-203ENST00000463916 HSPA5P11021 654 aaKnown RBP18.12■□□□□ 0.49
XRN1-203ENST00000463916 USP54Q70EL1 1684 aa18.12■□□□□ 0.49
XRN1-203ENST00000463916 THSD7AQ9UPZ6 1657 aa18.11■□□□□ 0.49
XRN1-203ENST00000463916 CDCA8Q53HL2 280 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms