RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 RALGAPBQ86X10 1494 aa18.47■□□□□ 0.55
CHD3-206ENST00000452447 ACEP12821 1306 aa18.46■□□□□ 0.55
CHD3-206ENST00000452447 VPS72Q15906 364 aa18.46■□□□□ 0.55
CHD3-206ENST00000452447 NBPF8Q3BBV2 869 aa18.46■□□□□ 0.55
CHD3-206ENST00000452447 TOPAZ1Q8N9V7 1692 aa18.46■□□□□ 0.54
CHD3-206ENST00000452447 QRICH2Q9H0J4 1663 aa18.46■□□□□ 0.54
CHD3-206ENST00000452447 TRPM1Q7Z4N2 1603 aa18.45■□□□□ 0.54
CHD3-206ENST00000452447 ROCK2O75116 1388 aaKnown RBP18.45■□□□□ 0.54
CHD3-206ENST00000452447 PLEKHG3A1L390 1219 aa18.45■□□□□ 0.54
CHD3-206ENST00000452447 POLR3AO14802 1390 aaPredicted RBP18.44■□□□□ 0.54
CHD3-206ENST00000452447 GLI3P10071 1580 aa18.44■□□□□ 0.54
CHD3-206ENST00000452447 CABP2Q9NPB3 220 aa18.44■□□□□ 0.54
CHD3-206ENST00000452447 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
CHD3-206ENST00000452447 BTG4Q9NY30 223 aa18.43■□□□□ 0.54
CHD3-206ENST00000452447 PRDM11Q9NQV5 511 aa18.42■□□□□ 0.54
CHD3-206ENST00000452447 COL14A1Q05707 1796 aaKnown RBP18.42■□□□□ 0.54
CHD3-206ENST00000452447 PPIP5K1Q6PFW1 1433 aa18.41■□□□□ 0.54
CHD3-206ENST00000452447 NUTM2GQ5VZR2 741 aa18.41■□□□□ 0.54
CHD3-206ENST00000452447 ABTB2Q8N961 1025 aa18.41■□□□□ 0.54
CHD3-206ENST00000452447 EVC2Q86UK5 1308 aa18.41■□□□□ 0.54
CHD3-206ENST00000452447 CRYBG1Q9Y4K1 1723 aa18.41■□□□□ 0.54
CHD3-206ENST00000452447 SEPT12Q8IYM1 358 aa18.39■□□□□ 0.53
CHD3-206ENST00000452447 A0A0G2JS52 829 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 MYT1Q01538 1121 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 TONSLQ96HA7 1378 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 BRWD3Q6RI45 1802 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 CCDC125Q86Z20 511 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 CABP1Q9NZU7 370 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 NRAPQ86VF7 1730 aa18.38■□□□□ 0.53
CHD3-206ENST00000452447 KIAA0232Q92628 1395 aa18.37■□□□□ 0.53
CHD3-206ENST00000452447 ONECUT3O60422 494 aaPredicted RBP18.37■□□□□ 0.53
CHD3-206ENST00000452447 ZC3H6P61129 1189 aaKnown RBP18.37■□□□□ 0.53
CHD3-206ENST00000452447 PHRF1Q9P1Y6 1649 aaKnown RBP18.36■□□□□ 0.53
CHD3-206ENST00000452447 NLRP13Q86W25 1043 aa18.35■□□□□ 0.53
CHD3-206ENST00000452447 BRD4O60885 1362 aaPredicted RBP18.35■□□□□ 0.53
CHD3-206ENST00000452447 CHRNA2Q15822 529 aa18.34■□□□□ 0.53
CHD3-206ENST00000452447 FAM98CQ17RN3 349 aaKnown RBP18.34■□□□□ 0.53
CHD3-206ENST00000452447 CARD11Q9BXL7 1154 aa18.34■□□□□ 0.53
CHD3-206ENST00000452447 KRT27Q7Z3Y8 459 aa18.34■□□□□ 0.53
CHD3-206ENST00000452447 STRN4Q9NRL3 753 aa18.33■□□□□ 0.52
CHD3-206ENST00000452447 SPATA31A5Q5VU36 1347 aa18.32■□□□□ 0.52
CHD3-206ENST00000452447 SPATA31A7Q8IWB4 1347 aa18.32■□□□□ 0.52
CHD3-206ENST00000452447 USP6P35125 1406 aa18.32■□□□□ 0.52
CHD3-206ENST00000452447 EVA1CP58658 441 aa18.31■□□□□ 0.52
CHD3-206ENST00000452447 USP19O94966 1318 aa18.31■□□□□ 0.52
CHD3-206ENST00000452447 NLRP6P59044 892 aa18.3■□□□□ 0.52
CHD3-206ENST00000452447 NRKQ7Z2Y5 1582 aa18.3■□□□□ 0.52
CHD3-206ENST00000452447 GCP02774 474 aa18.3■□□□□ 0.52
CHD3-206ENST00000452447 SF3B2Q13435 895 aaKnown RBP18.3■□□□□ 0.52
CHD3-206ENST00000452447 ZNF692Q9BU19 519 aaPredicted RBP18.3■□□□□ 0.52
CHD3-206ENST00000452447 BLMP54132 1417 aaPredicted RBP18.29■□□□□ 0.52
CHD3-206ENST00000452447 CPDO75976 1380 aa18.29■□□□□ 0.52
CHD3-206ENST00000452447 SPATA31A1Q5TZJ5 1347 aa18.27■□□□□ 0.52
CHD3-206ENST00000452447 SBNO2Q9Y2G9 1366 aa18.27■□□□□ 0.52
CHD3-206ENST00000452447 USP35Q9P2H5 1018 aa18.26■□□□□ 0.51
CHD3-206ENST00000452447 SRCAPQ6ZRS2 3230 aa18.26■□□□□ 0.51
CHD3-206ENST00000452447 ZBTB7CA1YPR0 619 aa18.25■□□□□ 0.51
CHD3-206ENST00000452447 ZRANB1Q9UGI0 708 aa18.25■□□□□ 0.51
CHD3-206ENST00000452447 SSH2Q76I76 1423 aa18.25■□□□□ 0.51
CHD3-206ENST00000452447 AKAP12Q02952 1782 aa18.24■□□□□ 0.51
CHD3-206ENST00000452447 CAMTA1Q9Y6Y1 1673 aa18.24■□□□□ 0.51
CHD3-206ENST00000452447 TTC21BQ7Z4L5 1316 aa18.24■□□□□ 0.51
CHD3-206ENST00000452447 PIK3C2AO00443 1686 aa18.23■□□□□ 0.51
CHD3-206ENST00000452447 KTN1Q86UP2 1357 aaKnown RBP18.23■□□□□ 0.51
CHD3-206ENST00000452447 LARP1Q6PKG0 1096 aaKnown RBP18.22■□□□□ 0.51
CHD3-206ENST00000452447 DEFB132Q7Z7B7 95 aa18.22■□□□□ 0.51
CHD3-206ENST00000452447 TMC1Q8TDI8 760 aa18.22■□□□□ 0.51
CHD3-206ENST00000452447 LMO7Q8WWI1 1683 aa18.22■□□□□ 0.51
CHD3-206ENST00000452447 TTC21AQ8NDW8 1320 aa18.22■□□□□ 0.51
CHD3-206ENST00000452447 CPSF1Q10570 1443 aaKnown RBP18.22■□□□□ 0.51
CHD3-206ENST00000452447 THSD7AQ9UPZ6 1657 aa18.22■□□□□ 0.51
CHD3-206ENST00000452447 SLIT3O75094 1523 aa18.21■□□□□ 0.51
CHD3-206ENST00000452447 FAM182BQ5T319 152 aa18.21■□□□□ 0.51
CHD3-206ENST00000452447 KCNH5Q8NCM2 988 aa18.21■□□□□ 0.51
CHD3-206ENST00000452447 BARGINQ6ZT62 677 aa18.2■□□□□ 0.5
CHD3-206ENST00000452447 TCP11L2Q8N4U5 519 aa18.2■□□□□ 0.5
CHD3-206ENST00000452447 AATKQ6ZMQ8 1374 aa18.19■□□□□ 0.5
CHD3-206ENST00000452447 SOX12O15370 315 aa18.18■□□□□ 0.5
CHD3-206ENST00000452447 BAG6P46379 1132 aa18.18■□□□□ 0.5
CHD3-206ENST00000452447 THRAP3Q9Y2W1 955 aaKnown RBP18.18■□□□□ 0.5
CHD3-206ENST00000452447 COL5A2P05997 1499 aaPredicted RBP18.18■□□□□ 0.5
CHD3-206ENST00000452447 SLC24A1O60721 1099 aa18.17■□□□□ 0.5
CHD3-206ENST00000452447 PDE3BQ13370 1112 aa18.17■□□□□ 0.5
CHD3-206ENST00000452447 HDGFL2Q7Z4V5 671 aaPredicted RBP18.17■□□□□ 0.5
CHD3-206ENST00000452447 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.17■□□□□ 0.5
CHD3-206ENST00000452447 MON2Q7Z3U7 1717 aa18.17■□□□□ 0.5
CHD3-206ENST00000452447 ST20-MTHFSA0A0A6YYL1 179 aa18.17■□□□□ 0.5
CHD3-206ENST00000452447 SLC12A5Q9H2X9 1139 aa18.17■□□□□ 0.5
CHD3-206ENST00000452447 CRB1P82279 1406 aa18.16■□□□□ 0.5
CHD3-206ENST00000452447 FAM196AQ6ZSG2 479 aa18.16■□□□□ 0.5
CHD3-206ENST00000452447 PUS7Q96PZ0 661 aaKnown RBP18.16■□□□□ 0.5
CHD3-206ENST00000452447 TERF2IPQ9NYB0 399 aa18.16■□□□□ 0.5
CHD3-206ENST00000452447 RGPD1P0DJD0 1748 aa18.15■□□□□ 0.5
CHD3-206ENST00000452447 TOM1L2Q6ZVM7 507 aa18.14■□□□□ 0.49
CHD3-206ENST00000452447 ARHGEF25Q86VW2 580 aa18.14■□□□□ 0.49
CHD3-206ENST00000452447 TESK2Q96S53 571 aa18.13■□□□□ 0.49
CHD3-206ENST00000452447 PCGF6Q9BYE7 350 aa18.13■□□□□ 0.49
CHD3-206ENST00000452447 COL18A1P39060 1754 aa18.13■□□□□ 0.49
CHD3-206ENST00000452447 CD163L1Q9NR16 1453 aa18.13■□□□□ 0.49
CHD3-206ENST00000452447 AXIN2Q9Y2T1 843 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms