RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 FILIP1LQ4L180 1135 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CT47A1Q5JQC4 288 aaPredicted RBP9.3□□□□□ -0.92
NEDD9-204ENST00000448183 ANKRD50Q9ULJ7 1429 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC191Q8NCU4 936 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 PKNOX2Q96KN3 472 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 GAPVD1Q14C86 1478 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 MCM4P33991 863 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 SMARCE1Q969G3 411 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 ZNF396Q96N95 335 aaPredicted RBP9.29□□□□□ -0.92
NEDD9-204ENST00000448183 WDR33Q9C0J8 1336 aaKnown RBP9.29□□□□□ -0.92
NEDD9-204ENST00000448183 ZNF644Q9H582 1327 aaPredicted RBP9.29□□□□□ -0.92
NEDD9-204ENST00000448183 FGD5Q6ZNL6 1462 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC30Q5VVM6 783 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 TTLL5Q6EMB2 1281 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 LEKR1Q6ZMV7 388 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 SPC24Q8NBT2 197 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC112Q8NEF3 446 aa9.29□□□□□ -0.92
NEDD9-204ENST00000448183 PNISRQ8TF01 805 aaKnown RBP9.29□□□□□ -0.92
NEDD9-204ENST00000448183 BICRAQ9NZM4 1560 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 BCAR3O75815 825 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 AIMP1Q12904 312 aaKnown RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 STK38Q15208 465 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 TWISTNBQ3B726 338 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 RAPGEF4Q8WZA2 1011 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC43Q96MW1 224 aaKnown RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 SART3Q15020 963 aaKnown RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 AEBP1Q8IUX7 1158 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 LRRC9Q6ZRR7 1453 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 SMG6Q86US8 1419 aaKnown RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 CT47B1P0C2W7 299 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 RDXP35241 583 aaKnown RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 PSME1Q06323 249 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 CABP2Q9NPB3 220 aa9.28□□□□□ -0.92
NEDD9-204ENST00000448183 CTDP1Q9Y5B0 961 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-204ENST00000448183 PRKAR2BP31323 418 aa9.27□□□□□ -0.92
NEDD9-204ENST00000448183 EPS15P42566 896 aa9.27□□□□□ -0.92
NEDD9-204ENST00000448183 JMYQ8N9B5 988 aa9.27□□□□□ -0.92
NEDD9-204ENST00000448183 RRP9O43818 475 aaKnown RBP9.27□□□□□ -0.93
NEDD9-204ENST00000448183 GNAI2P04899 355 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 PIP4K2AP48426 406 aaPredicted RBP9.27□□□□□ -0.93
NEDD9-204ENST00000448183 MYO6Q9UM54 1294 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 KRT85P78386 507 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 C1orf115Q9H7X2 142 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 GRIN2BQ13224 1484 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 IGF1RP08069 1367 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 ODF2Q5BJF6 829 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 AXDND1Q5T1B0 1012 aaPredicted RBP9.27□□□□□ -0.93
NEDD9-204ENST00000448183 ERC1Q8IUD2 1116 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 NOB1Q9ULX3 412 aaKnown RBP9.27□□□□□ -0.93
NEDD9-204ENST00000448183 CYP46A1Q9Y6A2 500 aa9.27□□□□□ -0.93
NEDD9-204ENST00000448183 ATP2B1P20020 1258 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 GAS2L2Q8NHY3 880 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 TNMDQ9H2S6 317 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 TSPYL1Q9H0U9 437 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 UQCRHLA0A096LP55 91 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 UQCRHP07919 91 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 ANKRD1Q15327 319 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 SCAPERQ9BY12 1400 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 ATF7IPQ6VMQ6 1270 aa9.26□□□□□ -0.93
NEDD9-204ENST00000448183 MVPQ14764 893 aaKnown RBP9.25□□□□□ -0.93
NEDD9-204ENST00000448183 WDR63Q8IWG1 891 aa9.25□□□□□ -0.93
NEDD9-204ENST00000448183 TBC1D2BQ9UPU7 963 aa9.25□□□□□ -0.93
NEDD9-204ENST00000448183 SERPINC1P01008 464 aa9.25□□□□□ -0.93
NEDD9-204ENST00000448183 TSR2Q969E8 191 aaKnown RBP9.25□□□□□ -0.93
NEDD9-204ENST00000448183 TXLNAP40222 546 aa9.25□□□□□ -0.93
NEDD9-204ENST00000448183 CEBPZQ03701 1054 aaKnown RBP9.25□□□□□ -0.93
NEDD9-204ENST00000448183 TMEM132EQ6IEE7 984 aa9.25□□□□□ -0.93
NEDD9-204ENST00000448183 MAGEC2Q9UBF1 373 aaPredicted RBP9.25□□□□□ -0.93
NEDD9-204ENST00000448183 HSP90AB2PQ58FF8 381 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 MPNDQ8N594 471 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 DNAJC2Q99543 621 aaKnown RBP9.24□□□□□ -0.93
NEDD9-204ENST00000448183 BRPF1P55201 1214 aaPredicted RBP9.24□□□□□ -0.93
NEDD9-204ENST00000448183 ZSCAN30Q86W11 494 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 FYCO1Q9BQS8 1478 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 CFAP70Q5T0N1 1121 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 CHD1LQ86WJ1 897 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 ZNHIT6Q9NWK9 470 aaKnown RBP9.24□□□□□ -0.93
NEDD9-204ENST00000448183 DNMBPQ6XZF7 1577 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 ERLIN1O75477 346 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 CCT4P50991 539 aaKnown RBP9.24□□□□□ -0.93
NEDD9-204ENST00000448183 SYTL4Q96C24 671 aaPredicted RBP9.24□□□□□ -0.93
NEDD9-204ENST00000448183 LRRCC1Q9C099 1032 aa9.24□□□□□ -0.93
NEDD9-204ENST00000448183 ME1P48163 572 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 LARP1BQ659C4 914 aaKnown RBP9.23□□□□□ -0.93
NEDD9-204ENST00000448183 NCOA2Q15596 1464 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 NLRP6P59044 892 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 PPFIBP1Q86W92 1011 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 RRBP1Q9P2E9 1410 aaKnown RBP9.23□□□□□ -0.93
NEDD9-204ENST00000448183 EIF3JO75822 258 aaKnown RBP9.23□□□□□ -0.93
NEDD9-204ENST00000448183 ZFYVE27Q5T4F4 411 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 DACH1Q9UI36 760 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 FYB1O15117 783 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 SLC4A2P04920 1241 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 SRCIN1Q9C0H9 1055 aa9.23□□□□□ -0.93
NEDD9-204ENST00000448183 KDM4AO75164 1064 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 NBPF1Q3BBV0 1214 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 NLRP2Q9NX02 1062 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 PDIA4P13667 645 aaKnown RBP9.22□□□□□ -0.93
NEDD9-204ENST00000448183 CEP57L1Q8IYX8 460 aa9.22□□□□□ -0.93
NEDD9-204ENST00000448183 RBM33Q96EV2 1170 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms