RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 EIF2S2P20042 333 aaKnown RBP20.3■□□□□ 0.84
TCOF1-206ENST00000445265 C1orf141Q5JVX7 400 aa20.3■□□□□ 0.84
TCOF1-206ENST00000445265 NECTIN2Q92692 538 aa20.3■□□□□ 0.84
TCOF1-206ENST00000445265 INSRP06213 1382 aa20.3■□□□□ 0.84
TCOF1-206ENST00000445265 TAOK2Q9UL54 1235 aa20.3■□□□□ 0.84
TCOF1-206ENST00000445265 IGHDP01880 384 aa20.3■□□□□ 0.84
TCOF1-206ENST00000445265 GAS2L2Q8NHY3 880 aa20.29■□□□□ 0.84
TCOF1-206ENST00000445265 KIF3AQ9Y496 699 aa20.29■□□□□ 0.84
TCOF1-206ENST00000445265 KDM5BQ9UGL1 1544 aa20.29■□□□□ 0.84
TCOF1-206ENST00000445265 K7ELQ4 463 aaPredicted RBP20.29■□□□□ 0.84
TCOF1-206ENST00000445265 ZKSCAN1P17029 563 aaPredicted RBP20.29■□□□□ 0.84
TCOF1-206ENST00000445265 C9orf78Q9NZ63 289 aaPredicted RBP20.29■□□□□ 0.84
TCOF1-206ENST00000445265 HSP90B1P14625 803 aaKnown RBP20.29■□□□□ 0.84
TCOF1-206ENST00000445265 NASPP49321 788 aaPredicted RBP20.28■□□□□ 0.84
TCOF1-206ENST00000445265 FOXD4L6Q3SYB3 417 aaPredicted RBP20.28■□□□□ 0.84
TCOF1-206ENST00000445265 FOXD4L3Q6VB84 417 aaPredicted RBP20.28■□□□□ 0.84
TCOF1-206ENST00000445265 MCM2P49736 904 aa20.28■□□□□ 0.84
TCOF1-206ENST00000445265 PLEKHH1Q9ULM0 1364 aa20.28■□□□□ 0.84
TCOF1-206ENST00000445265 SULT6B1Q6IMI4 303 aa20.28■□□□□ 0.84
TCOF1-206ENST00000445265 TXNDC2Q86VQ3 553 aa20.27■□□□□ 0.84
TCOF1-206ENST00000445265 POLR3AO14802 1390 aaPredicted RBP20.27■□□□□ 0.84
TCOF1-206ENST00000445265 CD109Q6YHK3 1445 aa20.27■□□□□ 0.83
TCOF1-206ENST00000445265 UBTFL1P0CB47 393 aaPredicted RBP20.27■□□□□ 0.83
TCOF1-206ENST00000445265 CCDC30Q5VVM6 783 aa20.27■□□□□ 0.83
TCOF1-206ENST00000445265 A2MP01023 1474 aa20.26■□□□□ 0.83
TCOF1-206ENST00000445265 EIF4G3O43432 1585 aaKnown RBP20.26■□□□□ 0.83
TCOF1-206ENST00000445265 TRHP20396 242 aaPredicted RBP20.26■□□□□ 0.83
TCOF1-206ENST00000445265 CHMP3Q9Y3E7 222 aa20.26■□□□□ 0.83
TCOF1-206ENST00000445265 TRIM27P14373 513 aa20.25■□□□□ 0.83
TCOF1-206ENST00000445265 IFIT2P09913 472 aaKnown RBP20.25■□□□□ 0.83
TCOF1-206ENST00000445265 GNL2Q13823 731 aaKnown RBP20.25■□□□□ 0.83
TCOF1-206ENST00000445265 CWC22Q9HCG8 908 aaKnown RBP20.25■□□□□ 0.83
TCOF1-206ENST00000445265 GORABQ5T7V8 394 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 RPAP2Q8IXW5 612 aaPredicted RBP20.24■□□□□ 0.83
TCOF1-206ENST00000445265 NEXNQ0ZGT2 675 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 GNAI2P04899 355 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 CCT4P50991 539 aaKnown RBP20.24■□□□□ 0.83
TCOF1-206ENST00000445265 CCDC27Q2M243 656 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 TBC1D2Q9BYX2 928 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 IL16Q14005 1332 aa20.24■□□□□ 0.83
TCOF1-206ENST00000445265 NPC1L1Q9UHC9 1359 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 ERC2O15083 957 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 MBD3O95983 291 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 C8orf34Q49A92 452 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 NEK4P51957 841 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.23■□□□□ 0.83
TCOF1-206ENST00000445265 KDM6BO15054 1643 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 IFT57Q9NWB7 429 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 NLRP6P59044 892 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 ADGBQ8N7X0 1667 aa20.23■□□□□ 0.83
TCOF1-206ENST00000445265 DDX58O95786 925 aaKnown RBP20.22■□□□□ 0.83
TCOF1-206ENST00000445265 TBC1D32Q96NH3 1257 aa20.22■□□□□ 0.83
TCOF1-206ENST00000445265 TRAPPC8Q9Y2L5 1435 aa20.22■□□□□ 0.83
TCOF1-206ENST00000445265 CHMP4CQ96CF2 233 aa20.22■□□□□ 0.83
TCOF1-206ENST00000445265 SMC3Q9UQE7 1217 aa20.22■□□□□ 0.83
TCOF1-206ENST00000445265 CCDC61Q9Y6R9 512 aa20.22■□□□□ 0.83
TCOF1-206ENST00000445265 IDI1Q13907 227 aa20.21■□□□□ 0.83
TCOF1-206ENST00000445265 TARBP1Q13395 1621 aaKnown RBP20.21■□□□□ 0.83
TCOF1-206ENST00000445265 GRPEL1Q9HAV7 217 aa20.21■□□□□ 0.83
TCOF1-206ENST00000445265 ANKRD36BQ8N2N9 1353 aa20.21■□□□□ 0.83
TCOF1-206ENST00000445265 RNF20Q5VTR2 975 aa20.2■□□□□ 0.82
TCOF1-206ENST00000445265 CAVIN1Q6NZI2 390 aaKnown RBP20.2■□□□□ 0.82
TCOF1-206ENST00000445265 TPM4P67936 248 aa20.19■□□□□ 0.82
TCOF1-206ENST00000445265 G3BP1Q13283 466 aaKnown RBP eCLIP20.19■□□□□ 0.822e-7■■■■□ 22.1
TCOF1-206ENST00000445265 ZMYM4Q5VZL5 1548 aa20.19■□□□□ 0.82
TCOF1-206ENST00000445265 H3BQV1 296 aa20.19■□□□□ 0.82
TCOF1-206ENST00000445265 IFFO2Q5TF58 517 aa20.19■□□□□ 0.82
TCOF1-206ENST00000445265 PUS7Q96PZ0 661 aaKnown RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 PCDHB15Q9Y5E8 787 aa20.18■□□□□ 0.82
TCOF1-206ENST00000445265 CCDC173Q0VFZ6 552 aa20.18■□□□□ 0.82
TCOF1-206ENST00000445265 RRS1Q15050 365 aaKnown RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 THUMPD2Q9BTF0 503 aaKnown RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 BLMP54132 1417 aaPredicted RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 SURF6O75683 361 aaKnown RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 HDAC1Q13547 482 aaPredicted RBP20.18■□□□□ 0.82
TCOF1-206ENST00000445265 FAM184AQ8NB25 1140 aa20.18■□□□□ 0.82
TCOF1-206ENST00000445265 NUDT16Q96DE0 195 aaKnown RBP20.17■□□□□ 0.82
TCOF1-206ENST00000445265 TAF7LQ5H9L4 462 aa20.17■□□□□ 0.82
TCOF1-206ENST00000445265 CNTROBQ8N137 903 aa20.17■□□□□ 0.82
TCOF1-206ENST00000445265 ZNF330Q9Y3S2 320 aaPredicted RBP20.17■□□□□ 0.82
TCOF1-206ENST00000445265 PRPF40AO75400 957 aaKnown RBP20.16■□□□□ 0.82
TCOF1-206ENST00000445265 PSME1Q06323 249 aa20.16■□□□□ 0.82
TCOF1-206ENST00000445265 LRRCC1Q9C099 1032 aa20.16■□□□□ 0.82
TCOF1-206ENST00000445265 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.16■□□□□ 0.82
TCOF1-206ENST00000445265 CARD14Q9BXL6 1004 aa20.15■□□□□ 0.82
TCOF1-206ENST00000445265 CLASRPQ8N2M8 674 aaKnown RBP20.15■□□□□ 0.82
TCOF1-206ENST00000445265 BMP2KLQ5H9B9 411 aa20.14■□□□□ 0.82
TCOF1-206ENST00000445265 ARID3AQ99856 593 aa20.14■□□□□ 0.81
TCOF1-206ENST00000445265 VPS37CA5D8V6 355 aaPredicted RBP20.14■□□□□ 0.81
TCOF1-206ENST00000445265 WAPLQ7Z5K2 1190 aa20.13■□□□□ 0.81
TCOF1-206ENST00000445265 SRCIN1Q9C0H9 1055 aa20.13■□□□□ 0.81
TCOF1-206ENST00000445265 SF3A1Q15459 793 aaKnown RBP20.13■□□□□ 0.81
TCOF1-206ENST00000445265 CCDC39Q9UFE4 941 aa20.13■□□□□ 0.81
TCOF1-206ENST00000445265 KDM5CP41229 1560 aa20.12■□□□□ 0.81
TCOF1-206ENST00000445265 KDM2BQ8NHM5 1336 aa20.12■□□□□ 0.81
TCOF1-206ENST00000445265 TTC5Q8N0Z6 440 aa20.12■□□□□ 0.81
TCOF1-206ENST00000445265 MAST1Q9Y2H9 1570 aa20.12■□□□□ 0.81
TCOF1-206ENST00000445265 GOLGA6L19H0YKK7 550 aa20.12■□□□□ 0.81
TCOF1-206ENST00000445265 ARHGEF5Q12774 1597 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms