RNA–Protein interactions for RNA: ENST00000444533.5

SSBP3-208, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-208ENST00000444533 KTN1Q86UP2 1357 aaKnown RBP19.54■□□□□ 0.72
SSBP3-208ENST00000444533 ABTB2Q8N961 1025 aa19.52■□□□□ 0.72
SSBP3-208ENST00000444533 USP6P35125 1406 aa19.51■□□□□ 0.71
SSBP3-208ENST00000444533 PHF23Q9BUL5 403 aaPredicted RBP19.5■□□□□ 0.71
SSBP3-208ENST00000444533 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
SSBP3-208ENST00000444533 NLRP13Q86W25 1043 aa19.49■□□□□ 0.71
SSBP3-208ENST00000444533 CPSF1Q10570 1443 aaKnown RBP19.49■□□□□ 0.71
SSBP3-208ENST00000444533 TTC21AQ8NDW8 1320 aa19.49■□□□□ 0.71
SSBP3-208ENST00000444533 ANKRD36BQ8N2N9 1353 aa19.48■□□□□ 0.71
SSBP3-208ENST00000444533 TRPM3Q9HCF6 1732 aaPredicted RBP19.47■□□□□ 0.71
SSBP3-208ENST00000444533 A0A1W2PP64 1363 aa19.46■□□□□ 0.71
SSBP3-208ENST00000444533 EDC4Q6P2E9 1401 aaKnown RBP19.46■□□□□ 0.71
SSBP3-208ENST00000444533 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.46■□□□□ 0.71
SSBP3-208ENST00000444533 TTC21BQ7Z4L5 1316 aa19.46■□□□□ 0.71
SSBP3-208ENST00000444533 AKAP12Q02952 1782 aa19.45■□□□□ 0.7
SSBP3-208ENST00000444533 COL22A1Q8NFW1 1626 aaPredicted RBP19.45■□□□□ 0.7
SSBP3-208ENST00000444533 ADAMTS2O95450 1211 aa19.45■□□□□ 0.7
SSBP3-208ENST00000444533 NLRP6P59044 892 aa19.45■□□□□ 0.7
SSBP3-208ENST00000444533 NUTM2GQ5VZR2 741 aa19.44■□□□□ 0.7
SSBP3-208ENST00000444533 MED1Q15648 1581 aaPredicted RBP19.43■□□□□ 0.7
SSBP3-208ENST00000444533 ALS2Q96Q42 1657 aa19.43■□□□□ 0.7
SSBP3-208ENST00000444533 CABLES1Q8TDN4 633 aa19.42■□□□□ 0.7
SSBP3-208ENST00000444533 KIF7Q2M1P5 1343 aa19.42■□□□□ 0.7
SSBP3-208ENST00000444533 CD163L1Q9NR16 1453 aa19.41■□□□□ 0.7
SSBP3-208ENST00000444533 NGLY1Q96IV0 654 aa19.41■□□□□ 0.7
SSBP3-208ENST00000444533 C8orf37Q96NL8 207 aa19.41■□□□□ 0.7
SSBP3-208ENST00000444533 MON2Q7Z3U7 1717 aa19.41■□□□□ 0.7
SSBP3-208ENST00000444533 SSH2Q76I76 1423 aa19.4■□□□□ 0.7
SSBP3-208ENST00000444533 C11orf95C9JLR9 678 aaPredicted RBP19.39■□□□□ 0.69
SSBP3-208ENST00000444533 KCNH5Q8NCM2 988 aa19.39■□□□□ 0.69
SSBP3-208ENST00000444533 LRP6O75581 1613 aa19.38■□□□□ 0.69
SSBP3-208ENST00000444533 COG3Q96JB2 828 aa19.38■□□□□ 0.69
SSBP3-208ENST00000444533 CCDC7Q96M83 1385 aa19.37■□□□□ 0.69
SSBP3-208ENST00000444533 CGNL1Q0VF96 1302 aa19.37■□□□□ 0.69
SSBP3-208ENST00000444533 ZNF772Q68DY9 489 aaPredicted RBP19.37■□□□□ 0.69
SSBP3-208ENST00000444533 PANK3Q9H999 370 aa19.37■□□□□ 0.69
SSBP3-208ENST00000444533 MYOM1P52179 1685 aa19.36■□□□□ 0.69
SSBP3-208ENST00000444533 NRKQ7Z2Y5 1582 aa19.36■□□□□ 0.69
SSBP3-208ENST00000444533 GCP02774 474 aa19.36■□□□□ 0.69
SSBP3-208ENST00000444533 NME9Q86XW9 330 aa19.36■□□□□ 0.69
SSBP3-208ENST00000444533 PRDM11Q9NQV5 511 aa19.36■□□□□ 0.69
SSBP3-208ENST00000444533 NSD3Q9BZ95 1437 aa19.35■□□□□ 0.69
SSBP3-208ENST00000444533 USP19O94966 1318 aa19.35■□□□□ 0.69
SSBP3-208ENST00000444533 KNSTRNQ9Y448 316 aa19.35■□□□□ 0.69
SSBP3-208ENST00000444533 WASHC2AQ641Q2 1341 aa19.34■□□□□ 0.69
SSBP3-208ENST00000444533 ZC3H6P61129 1189 aaKnown RBP19.34■□□□□ 0.69
SSBP3-208ENST00000444533 PIK3C2AO00443 1686 aa19.33■□□□□ 0.69
SSBP3-208ENST00000444533 USP31Q70CQ4 1352 aa19.33■□□□□ 0.69
SSBP3-208ENST00000444533 AFF2P51816 1311 aa19.33■□□□□ 0.69
SSBP3-208ENST00000444533 SOX12O15370 315 aa19.33■□□□□ 0.68
SSBP3-208ENST00000444533 ZBTB7CA1YPR0 619 aa19.32■□□□□ 0.68
SSBP3-208ENST00000444533 CARD14Q9BXL6 1004 aa19.31■□□□□ 0.68
SSBP3-208ENST00000444533 USP21Q9UK80 565 aa19.31■□□□□ 0.68
SSBP3-208ENST00000444533 ABCA3Q99758 1704 aa19.31■□□□□ 0.68
SSBP3-208ENST00000444533 PHRF1Q9P1Y6 1649 aaKnown RBP19.3■□□□□ 0.68
SSBP3-208ENST00000444533 FYB1O15117 783 aa19.3■□□□□ 0.68
SSBP3-208ENST00000444533 GGNBP2Q9H3C7 697 aa19.3■□□□□ 0.68
SSBP3-208ENST00000444533 MARF1Q9Y4F3 1742 aaKnown RBP19.3■□□□□ 0.68
SSBP3-208ENST00000444533 KIAA0232Q92628 1395 aa19.3■□□□□ 0.68
SSBP3-208ENST00000444533 FNBP4Q8N3X1 1017 aaPredicted RBP19.29■□□□□ 0.68
SSBP3-208ENST00000444533 FAM83GA6ND36 823 aa19.28■□□□□ 0.68
SSBP3-208ENST00000444533 ZRANB1Q9UGI0 708 aa19.28■□□□□ 0.68
SSBP3-208ENST00000444533 SLIT3O75094 1523 aa19.28■□□□□ 0.68
SSBP3-208ENST00000444533 CPDO75976 1380 aa19.28■□□□□ 0.68
SSBP3-208ENST00000444533 EVA1CP58658 441 aa19.27■□□□□ 0.68
SSBP3-208ENST00000444533 NSD2O96028 1365 aa19.27■□□□□ 0.68
SSBP3-208ENST00000444533 OVOS2A0A0J9YW53 1432 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 OVOS2Q6IE36 1432 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 CRYBG1Q9Y4K1 1723 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 CHRNA2Q15822 529 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 UNC5CLQ8IV45 518 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 BTG4Q9NY30 223 aa19.26■□□□□ 0.67
SSBP3-208ENST00000444533 TRPC5Q9UL62 973 aaPredicted RBP19.26■□□□□ 0.67
SSBP3-208ENST00000444533 COL14A1Q05707 1796 aaKnown RBP19.26■□□□□ 0.67
SSBP3-208ENST00000444533 KIF20BQ96Q89 1820 aa19.25■□□□□ 0.67
SSBP3-208ENST00000444533 QTRT2Q9H974 415 aaKnown RBP19.25■□□□□ 0.67
SSBP3-208ENST00000444533 CCDC9Q9Y3X0 531 aaKnown RBP19.25■□□□□ 0.67
SSBP3-208ENST00000444533 USP54Q70EL1 1684 aa19.24■□□□□ 0.67
SSBP3-208ENST00000444533 ARHGEF25Q86VW2 580 aa19.23■□□□□ 0.67
SSBP3-208ENST00000444533 AATKQ6ZMQ8 1374 aa19.22■□□□□ 0.67
SSBP3-208ENST00000444533 SLIT2O94813 1529 aa19.22■□□□□ 0.67
SSBP3-208ENST00000444533 AMPHP49418 695 aa19.22■□□□□ 0.67
SSBP3-208ENST00000444533 MORC1Q86VD1 984 aa19.22■□□□□ 0.67
SSBP3-208ENST00000444533 RXRBP28702 533 aa19.21■□□□□ 0.67
SSBP3-208ENST00000444533 STRN4Q9NRL3 753 aa19.21■□□□□ 0.67
SSBP3-208ENST00000444533 NWD2Q9ULI1 1742 aa19.21■□□□□ 0.67
SSBP3-208ENST00000444533 RGS17Q9UGC6 210 aaPredicted RBP19.2■□□□□ 0.66
SSBP3-208ENST00000444533 PLCH1Q4KWH8 1693 aa19.2■□□□□ 0.66
SSBP3-208ENST00000444533 ZNF316A6NFI3 1004 aaPredicted RBP19.19■□□□□ 0.66
SSBP3-208ENST00000444533 CSB-PGBD3P0DP91 1061 aa19.19■□□□□ 0.66
SSBP3-208ENST00000444533 RBM6P78332 1123 aaKnown RBP19.19■□□□□ 0.66
SSBP3-208ENST00000444533 NFAT5O94916 1531 aa19.19■□□□□ 0.66
SSBP3-208ENST00000444533 BCL9LQ86UU0 1499 aa19.18■□□□□ 0.66
SSBP3-208ENST00000444533 VPS72Q15906 364 aa19.18■□□□□ 0.66
SSBP3-208ENST00000444533 ABCC6O95255 1503 aa19.17■□□□□ 0.66
SSBP3-208ENST00000444533 TNNT2P45379 298 aaPredicted RBP19.17■□□□□ 0.66
SSBP3-208ENST00000444533 POTEAQ6S8J7 498 aa19.17■□□□□ 0.66
SSBP3-208ENST00000444533 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.17■□□□□ 0.66
SSBP3-208ENST00000444533 PPM1GO15355 546 aaPredicted RBP19.16■□□□□ 0.66
SSBP3-208ENST00000444533 PER1O15534 1290 aaPredicted RBP19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms