RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 A0A0G2JS52 829 aa21.42■■□□□ 1.02
HMGN1-208ENST00000443046 MYT1Q01538 1121 aa21.42■■□□□ 1.02
HMGN1-208ENST00000443046 ACIN1Q9UKV3 1341 aaKnown RBP21.42■■□□□ 1.02
HMGN1-208ENST00000443046 TNS1Q9HBL0 1735 aaKnown RBP21.41■■□□□ 1.02
HMGN1-208ENST00000443046 GPRASP1Q5JY77 1395 aa21.41■■□□□ 1.02
HMGN1-208ENST00000443046 FAM182BQ5T319 152 aa21.4■■□□□ 1.02
HMGN1-208ENST00000443046 TULP4Q9NRJ4 1543 aa21.39■■□□□ 1.02
HMGN1-208ENST00000443046 EIF3AQ14152 1382 aaKnown RBP21.38■■□□□ 1.01
HMGN1-208ENST00000443046 HIRIP3Q9BW71 556 aaPredicted RBP21.38■■□□□ 1.01
HMGN1-208ENST00000443046 WASLO00401 505 aaPredicted RBP21.36■■□□□ 1.01
HMGN1-208ENST00000443046 R3HDM1Q15032 1099 aaKnown RBP21.36■■□□□ 1.01
HMGN1-208ENST00000443046 TRAK1Q9UPV9 953 aa21.36■■□□□ 1.01
HMGN1-208ENST00000443046 SPATA31A1Q5TZJ5 1347 aa21.35■■□□□ 1.01
HMGN1-208ENST00000443046 MINK1Q8N4C8 1332 aaPredicted RBP21.35■■□□□ 1.01
HMGN1-208ENST00000443046 CAMKK2Q96RR4 588 aa21.35■■□□□ 1.01
HMGN1-208ENST00000443046 EZH2Q15910 746 aaKnown RBP21.34■■□□□ 1.01
HMGN1-208ENST00000443046 PRDM11Q9NQV5 511 aa21.33■■□□□ 1.01
HMGN1-208ENST00000443046 FAM196AQ6ZSG2 479 aa21.31■■□□□ 1
HMGN1-208ENST00000443046 NGDNQ8NEJ9 315 aaKnown RBP21.31■■□□□ 1
HMGN1-208ENST00000443046 KIAA0232Q92628 1395 aa21.31■■□□□ 1
HMGN1-208ENST00000443046 ATP7BP35670 1465 aa21.29■■□□□ 1
HMGN1-208ENST00000443046 PARD3Q8TEW0 1356 aa21.29■■□□□ 1
HMGN1-208ENST00000443046 PAK3O75914 559 aaPredicted RBP21.29■■□□□ 1
HMGN1-208ENST00000443046 TRIM37O94972 964 aa21.29■■□□□ 1
HMGN1-208ENST00000443046 PHRF1Q9P1Y6 1649 aaKnown RBP21.29■■□□□ 1
HMGN1-208ENST00000443046 ITSN1Q15811 1721 aa21.28■■□□□ 1
HMGN1-208ENST00000443046 RREB1Q92766 1687 aa21.26■□□□□ 0.99
HMGN1-208ENST00000443046 CHRNA2Q15822 529 aa21.26■□□□□ 0.99
HMGN1-208ENST00000443046 BARGINQ6ZT62 677 aa21.26■□□□□ 0.99
HMGN1-208ENST00000443046 NUDT16Q96DE0 195 aaKnown RBP21.26■□□□□ 0.99
HMGN1-208ENST00000443046 STAC3Q96MF2 364 aa21.26■□□□□ 0.99
HMGN1-208ENST00000443046 ARHGEF28Q8N1W1 1705 aaKnown RBP21.25■□□□□ 0.99
HMGN1-208ENST00000443046 APBA3O96018 575 aa21.24■□□□□ 0.99
HMGN1-208ENST00000443046 DCAF11Q8TEB1 546 aa21.24■□□□□ 0.99
HMGN1-208ENST00000443046 POLR3AO14802 1390 aaPredicted RBP21.23■□□□□ 0.99
HMGN1-208ENST00000443046 STRN4Q9NRL3 753 aa21.23■□□□□ 0.99
HMGN1-208ENST00000443046 KDM2AQ9Y2K7 1162 aa21.23■□□□□ 0.99
HMGN1-208ENST00000443046 SSH2Q76I76 1423 aa21.22■□□□□ 0.99
HMGN1-208ENST00000443046 NUP188Q5SRE5 1749 aa21.22■□□□□ 0.99
HMGN1-208ENST00000443046 ZC3H6P61129 1189 aaKnown RBP21.22■□□□□ 0.99
HMGN1-208ENST00000443046 CAMTA1Q9Y6Y1 1673 aa21.21■□□□□ 0.99
HMGN1-208ENST00000443046 TOPAZ1Q8N9V7 1692 aa21.21■□□□□ 0.99
HMGN1-208ENST00000443046 RAB3GAP2Q9H2M9 1393 aa21.21■□□□□ 0.99
HMGN1-208ENST00000443046 LMO7Q8WWI1 1683 aa21.2■□□□□ 0.98
HMGN1-208ENST00000443046 CPDO75976 1380 aa21.2■□□□□ 0.98
HMGN1-208ENST00000443046 NRKQ7Z2Y5 1582 aa21.19■□□□□ 0.98
HMGN1-208ENST00000443046 PLEKHG3A1L390 1219 aa21.19■□□□□ 0.98
HMGN1-208ENST00000443046 NBPF8Q3BBV2 869 aa21.19■□□□□ 0.98
HMGN1-208ENST00000443046 CDK19Q9BWU1 502 aa21.19■□□□□ 0.98
HMGN1-208ENST00000443046 PDE3BQ13370 1112 aa21.18■□□□□ 0.98
HMGN1-208ENST00000443046 NUTM2GQ5VZR2 741 aa21.18■□□□□ 0.98
HMGN1-208ENST00000443046 USP35Q9P2H5 1018 aa21.18■□□□□ 0.98
HMGN1-208ENST00000443046 ACEP12821 1306 aa21.18■□□□□ 0.98
HMGN1-208ENST00000443046 LARP1Q6PKG0 1096 aaKnown RBP21.17■□□□□ 0.98
HMGN1-208ENST00000443046 TCP11L2Q8N4U5 519 aa21.17■□□□□ 0.98
HMGN1-208ENST00000443046 CCDC61Q9Y6R9 512 aa21.17■□□□□ 0.98
HMGN1-208ENST00000443046 USP19O94966 1318 aa21.16■□□□□ 0.98
HMGN1-208ENST00000443046 EVA1CP58658 441 aa21.16■□□□□ 0.98
HMGN1-208ENST00000443046 THRAP3Q9Y2W1 955 aaKnown RBP21.16■□□□□ 0.98
HMGN1-208ENST00000443046 NBPF14Q5TI25 921 aa21.15■□□□□ 0.98
HMGN1-208ENST00000443046 PARP4Q9UKK3 1724 aaKnown RBP21.15■□□□□ 0.98
HMGN1-208ENST00000443046 ABTB2Q8N961 1025 aa21.13■□□□□ 0.97
HMGN1-208ENST00000443046 UTRNP46939 3433 aa21.11■□□□□ 0.97
HMGN1-208ENST00000443046 PEAK1Q9H792 1746 aa21.11■□□□□ 0.97
HMGN1-208ENST00000443046 COL5A2P05997 1499 aaPredicted RBP21.1■□□□□ 0.97
HMGN1-208ENST00000443046 C11orf95C9JLR9 678 aaPredicted RBP21.1■□□□□ 0.97
HMGN1-208ENST00000443046 YY1P25490 414 aa21.1■□□□□ 0.97
HMGN1-208ENST00000443046 KCNQ2O43526 872 aa21.09■□□□□ 0.97
HMGN1-208ENST00000443046 GCP02774 474 aa21.09■□□□□ 0.97
HMGN1-208ENST00000443046 SPON1Q9HCB6 807 aa21.09■□□□□ 0.97
HMGN1-208ENST00000443046 RGPD3A6NKT7 1758 aaPredicted RBP21.09■□□□□ 0.97
HMGN1-208ENST00000443046 RGPD4Q7Z3J3 1758 aa21.09■□□□□ 0.97
HMGN1-208ENST00000443046 KIAA1210Q9ULL0 1709 aa21.09■□□□□ 0.97
HMGN1-208ENST00000443046 NLRP13Q86W25 1043 aa21.08■□□□□ 0.97
HMGN1-208ENST00000443046 SBF2Q86WG5 1849 aa21.07■□□□□ 0.96
HMGN1-208ENST00000443046 CRB1P82279 1406 aa21.06■□□□□ 0.96
HMGN1-208ENST00000443046 PLSCR1O15162 318 aa21.06■□□□□ 0.96
HMGN1-208ENST00000443046 BRD4O60885 1362 aaPredicted RBP21.06■□□□□ 0.96
HMGN1-208ENST00000443046 NINLQ9Y2I6 1382 aa21.06■□□□□ 0.96
HMGN1-208ENST00000443046 OVOS2A0A0G2JMS6 1433 aa21.04■□□□□ 0.96
HMGN1-208ENST00000443046 OVOS2A0A0J9YW53 1432 aa21.04■□□□□ 0.96
HMGN1-208ENST00000443046 OVOS2Q6IE36 1432 aa21.04■□□□□ 0.96
HMGN1-208ENST00000443046 PPIP5K1Q6PFW1 1433 aa21.04■□□□□ 0.96
HMGN1-208ENST00000443046 AATKQ6ZMQ8 1374 aa21.03■□□□□ 0.96
HMGN1-208ENST00000443046 CASZ1Q86V15 1759 aa21.02■□□□□ 0.96
HMGN1-208ENST00000443046 PPP1R1BQ9UD71 204 aaPredicted RBP21.02■□□□□ 0.96
HMGN1-208ENST00000443046 LRRC37A3O60309 1634 aa21.02■□□□□ 0.96
HMGN1-208ENST00000443046 SLIT3O75094 1523 aa21.02■□□□□ 0.96
HMGN1-208ENST00000443046 COL18A1P39060 1754 aa21.02■□□□□ 0.96
HMGN1-208ENST00000443046 NBPF1Q3BBV0 1214 aa21.01■□□□□ 0.95
HMGN1-208ENST00000443046 ANO8Q9HCE9 1232 aaPredicted RBP21■□□□□ 0.95
HMGN1-208ENST00000443046 BCL9O00512 1426 aa21■□□□□ 0.95
HMGN1-208ENST00000443046 PTF1AQ7RTS3 328 aa20.99■□□□□ 0.95
HMGN1-208ENST00000443046 PROM2Q8N271 834 aa20.99■□□□□ 0.95
HMGN1-208ENST00000443046 BCL11BQ9C0K0 894 aaPredicted RBP20.99■□□□□ 0.95
HMGN1-208ENST00000443046 USP6P35125 1406 aa20.98■□□□□ 0.95
HMGN1-208ENST00000443046 SRPK2P78362 688 aaKnown RBP20.98■□□□□ 0.95
HMGN1-208ENST00000443046 DDB1Q16531 1140 aa20.98■□□□□ 0.95
HMGN1-208ENST00000443046 CABP2Q9NPB3 220 aa20.98■□□□□ 0.95
HMGN1-208ENST00000443046 WNK3Q9BYP7 1800 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 235 ms