RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 CCER1Q8TC90 406 aaPredicted RBP34.03■■■■□ 3.04
CPNE1-217ENST00000439669 SBNO2Q9Y2G9 1366 aa34.02■■■■□ 3.04
CPNE1-217ENST00000439669 CABP1Q9NZU7 370 aa34.02■■■■□ 3.04
CPNE1-217ENST00000439669 TRPC5Q9UL62 973 aaPredicted RBP34.01■■■■□ 3.03
CPNE1-217ENST00000439669 RBM6P78332 1123 aaKnown RBP33.99■■■■□ 3.03
CPNE1-217ENST00000439669 TIMELESSQ9UNS1 1208 aa33.98■■■■□ 3.03
CPNE1-217ENST00000439669 BCL9LQ86UU0 1499 aa33.97■■■■□ 3.03
CPNE1-217ENST00000439669 ATAD2Q6PL18 1390 aa33.97■■■■□ 3.03
CPNE1-217ENST00000439669 ATRNO75882 1429 aa33.96■■■■□ 3.03
CPNE1-217ENST00000439669 CDK12Q9NYV4 1490 aaPredicted RBP33.95■■■■□ 3.03
CPNE1-217ENST00000439669 NUTM2GQ5VZR2 741 aa33.95■■■■□ 3.03
CPNE1-217ENST00000439669 SLIT2O94813 1529 aa33.94■■■■□ 3.02
CPNE1-217ENST00000439669 CRYBG1Q9Y4K1 1723 aa33.92■■■■□ 3.02
CPNE1-217ENST00000439669 USP6P35125 1406 aa33.91■■■■□ 3.02
CPNE1-217ENST00000439669 UNC5CLQ8IV45 518 aa33.91■■■■□ 3.02
CPNE1-217ENST00000439669 ABTB2Q8N961 1025 aa33.91■■■■□ 3.02
CPNE1-217ENST00000439669 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.9■■■■□ 3.02
CPNE1-217ENST00000439669 PLCH1Q4KWH8 1693 aa33.9■■■■□ 3.02
CPNE1-217ENST00000439669 RGS12O14924 1447 aa33.89■■■■□ 3.02
CPNE1-217ENST00000439669 BRD4O60885 1362 aaPredicted RBP33.89■■■■□ 3.02
CPNE1-217ENST00000439669 ST20-MTHFSA0A0A6YYL1 179 aa33.89■■■■□ 3.02
CPNE1-217ENST00000439669 FAM83GA6ND36 823 aa33.88■■■■□ 3.01
CPNE1-217ENST00000439669 USP47Q96K76 1375 aa33.86■■■■□ 3.01
CPNE1-217ENST00000439669 PHRF1Q9P1Y6 1649 aaKnown RBP33.86■■■■□ 3.01
CPNE1-217ENST00000439669 NWD2Q9ULI1 1742 aa33.85■■■■□ 3.01
CPNE1-217ENST00000439669 GJD4Q96KN9 370 aaPredicted RBP33.83■■■■□ 3.01
CPNE1-217ENST00000439669 TESK2Q96S53 571 aa33.83■■■■□ 3.01
CPNE1-217ENST00000439669 PRDM11Q9NQV5 511 aa33.83■■■■□ 3.01
CPNE1-217ENST00000439669 COL14A1Q05707 1796 aaKnown RBP33.83■■■■□ 3.01
CPNE1-217ENST00000439669 NLRP13Q86W25 1043 aa33.82■■■■□ 3
CPNE1-217ENST00000439669 ZNF692Q9BU19 519 aaPredicted RBP33.82■■■■□ 3
CPNE1-217ENST00000439669 AKAP12Q02952 1782 aa33.81■■■■□ 3
CPNE1-217ENST00000439669 TMC1Q8TDI8 760 aa33.81■■■■□ 3
CPNE1-217ENST00000439669 KIAA0232Q92628 1395 aa33.8■■■■□ 3
CPNE1-217ENST00000439669 USP19O94966 1318 aa33.79■■■■□ 3
CPNE1-217ENST00000439669 SSH2Q76I76 1423 aa33.79■■■■□ 3
CPNE1-217ENST00000439669 ZC3H6P61129 1189 aaKnown RBP33.79■■■■□ 3
CPNE1-217ENST00000439669 BTG4Q9NY30 223 aa33.79■■■■□ 3
CPNE1-217ENST00000439669 CCDC9Q9Y3X0 531 aaKnown RBP33.79■■■■□ 3
CPNE1-217ENST00000439669 CPSF1Q10570 1443 aaKnown RBP33.79■■■■□ 3
CPNE1-217ENST00000439669 NRKQ7Z2Y5 1582 aa33.78■■■■□ 3
CPNE1-217ENST00000439669 KTN1Q86UP2 1357 aaKnown RBP33.78■■■■□ 3
CPNE1-217ENST00000439669 SLC24A1O60721 1099 aa33.77■■■■□ 3
CPNE1-217ENST00000439669 NLRP6P59044 892 aa33.77■■■■□ 3
CPNE1-217ENST00000439669 VPS72Q15906 364 aa33.77■■■■□ 3
CPNE1-217ENST00000439669 NRAPQ86VF7 1730 aa33.76■■■□□ 2.99
CPNE1-217ENST00000439669 CHRNA2Q15822 529 aa33.75■■■□□ 2.99
CPNE1-217ENST00000439669 PUS7Q96PZ0 661 aaKnown RBP33.75■■■□□ 2.99
CPNE1-217ENST00000439669 GLI3P10071 1580 aa33.75■■■□□ 2.99
CPNE1-217ENST00000439669 TTC21BQ7Z4L5 1316 aa33.75■■■□□ 2.99
CPNE1-217ENST00000439669 PIK3C2AO00443 1686 aa33.74■■■□□ 2.99
CPNE1-217ENST00000439669 SLC12A5Q9H2X9 1139 aa33.73■■■□□ 2.99
CPNE1-217ENST00000439669 HDGFL2Q7Z4V5 671 aaPredicted RBP33.72■■■□□ 2.99
CPNE1-217ENST00000439669 MON2Q7Z3U7 1717 aa33.72■■■□□ 2.99
CPNE1-217ENST00000439669 TTC21AQ8NDW8 1320 aa33.72■■■□□ 2.99
CPNE1-217ENST00000439669 GCP02774 474 aa33.71■■■□□ 2.99
CPNE1-217ENST00000439669 CD163L1Q9NR16 1453 aa33.7■■■□□ 2.99
CPNE1-217ENST00000439669 TMF1P82094 1093 aa33.7■■■□□ 2.99
CPNE1-217ENST00000439669 TERF2IPQ9NYB0 399 aa33.68■■■□□ 2.98
CPNE1-217ENST00000439669 CPDO75976 1380 aa33.68■■■□□ 2.98
CPNE1-217ENST00000439669 SLIT3O75094 1523 aa33.67■■■□□ 2.98
CPNE1-217ENST00000439669 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.66■■■□□ 2.98
CPNE1-217ENST00000439669 NINLQ9Y2I6 1382 aa33.66■■■□□ 2.98
CPNE1-217ENST00000439669 A0A1W2PP64 1363 aa33.64■■■□□ 2.98
CPNE1-217ENST00000439669 ZBTB7CA1YPR0 619 aa33.64■■■□□ 2.98
CPNE1-217ENST00000439669 UPF1Q92900 1129 aaKnown RBP eCLIP33.64■■■□□ 2.98
CPNE1-217ENST00000439669 STRN4Q9NRL3 753 aa33.64■■■□□ 2.98
CPNE1-217ENST00000439669 EDC4Q6P2E9 1401 aaKnown RBP33.61■■■□□ 2.97
CPNE1-217ENST00000439669 A0A0G2JS52 829 aa33.6■■■□□ 2.97
CPNE1-217ENST00000439669 MYT1Q01538 1121 aa33.6■■■□□ 2.97
CPNE1-217ENST00000439669 SPATA31A5Q5VU36 1347 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 SPATA31A7Q8IWB4 1347 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 SOX12O15370 315 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 EVA1CP58658 441 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 CDCA8Q53HL2 280 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 SEPT12Q8IYM1 358 aa33.59■■■□□ 2.97
CPNE1-217ENST00000439669 LMO7Q8WWI1 1683 aa33.58■■■□□ 2.97
CPNE1-217ENST00000439669 NME9Q86XW9 330 aa33.58■■■□□ 2.97
CPNE1-217ENST00000439669 CAMTA1Q9Y6Y1 1673 aa33.58■■■□□ 2.97
CPNE1-217ENST00000439669 FAM98CQ17RN3 349 aaKnown RBP33.57■■■□□ 2.96
CPNE1-217ENST00000439669 KCNH5Q8NCM2 988 aa33.57■■■□□ 2.96
CPNE1-217ENST00000439669 ZRANB1Q9UGI0 708 aa33.56■■■□□ 2.96
CPNE1-217ENST00000439669 ONECUT3O60422 494 aaPredicted RBP33.54■■■□□ 2.96
CPNE1-217ENST00000439669 USP31Q70CQ4 1352 aa33.54■■■□□ 2.96
CPNE1-217ENST00000439669 AATKQ6ZMQ8 1374 aa33.52■■■□□ 2.96
CPNE1-217ENST00000439669 ANKRD36BQ8N2N9 1353 aa33.52■■■□□ 2.96
CPNE1-217ENST00000439669 SPATA31A1Q5TZJ5 1347 aa33.52■■■□□ 2.96
CPNE1-217ENST00000439669 BRWD3Q6RI45 1802 aa33.51■■■□□ 2.96
CPNE1-217ENST00000439669 EIF4G2P78344 907 aaKnown RBP eCLIP33.51■■■□□ 2.95
CPNE1-217ENST00000439669 COL5A2P05997 1499 aaPredicted RBP33.5■■■□□ 2.95
CPNE1-217ENST00000439669 NFAT5O94916 1531 aa33.49■■■□□ 2.95
CPNE1-217ENST00000439669 USP54Q70EL1 1684 aa33.49■■■□□ 2.95
CPNE1-217ENST00000439669 LARP1Q6PKG0 1096 aaKnown RBP33.49■■■□□ 2.95
CPNE1-217ENST00000439669 USP35Q9P2H5 1018 aa33.49■■■□□ 2.95
CPNE1-217ENST00000439669 ARHGEF25Q86VW2 580 aa33.48■■■□□ 2.95
CPNE1-217ENST00000439669 HSPA5P11021 654 aaKnown RBP33.46■■■□□ 2.95
CPNE1-217ENST00000439669 KRT27Q7Z3Y8 459 aa33.46■■■□□ 2.95
CPNE1-217ENST00000439669 COL18A1P39060 1754 aa33.44■■■□□ 2.94
CPNE1-217ENST00000439669 OVOS2A0A0J9YW53 1432 aa33.44■■■□□ 2.94
CPNE1-217ENST00000439669 OVOS2Q6IE36 1432 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms