RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 RBM5P52756 815 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC88A-207ENST00000436346 PRKRIP1Q9H875 184 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-207ENST00000436346 PLEKHH2Q8IVE3 1493 aa14.49□□□□□ -0.09
CCDC88A-207ENST00000436346 TTC39AQ5SRH9 613 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 PANK1Q8TE04 598 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 LNPKQ9C0E8 428 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 CNNM1Q9NRU3 951 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 PSMA5P28066 241 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 PAF1Q8N7H5 531 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 CCDC30Q5VVM6 783 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 ZNF428Q96B54 188 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 SCAPERQ9BY12 1400 aa14.48□□□□□ -0.09
CCDC88A-207ENST00000436346 CAGE1Q8TC20 777 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 NESP48681 1621 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 PROSER2Q86WR7 435 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 OFD1O75665 1012 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 RDXP35241 583 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 GGNBP2Q9H3C7 697 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 AK7Q96M32 723 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 PDILTQ8N807 584 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 SNAPC4Q5SXM2 1469 aa14.47□□□□□ -0.09
CCDC88A-207ENST00000436346 TOM1L2Q6ZVM7 507 aa14.46□□□□□ -0.09
CCDC88A-207ENST00000436346 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-207ENST00000436346 TXNDC2Q86VQ3 553 aa14.45□□□□□ -0.1
CCDC88A-207ENST00000436346 POGZQ7Z3K3 1410 aa14.45□□□□□ -0.1
CCDC88A-207ENST00000436346 IFT57Q9NWB7 429 aa14.45□□□□□ -0.1
CCDC88A-207ENST00000436346 PLEKHO1Q53GL0 409 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-207ENST00000436346 KRT18P05783 430 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 CABP4P57796 275 aa14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 TTLL5Q6EMB2 1281 aa14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 GAS2L2Q8NHY3 880 aa14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 PRAM1Q96QH2 718 aa14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.44□□□□□ -0.12e-6■□□□□ 8.9
CCDC88A-207ENST00000436346 TXLNAP40222 546 aa14.44□□□□□ -0.1
CCDC88A-207ENST00000436346 BCL11BQ9C0K0 894 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 TEX35Q5T0J7 233 aa14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 STK11IPQ8N1F8 1099 aa14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 MYL6BP14649 208 aa14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 PBRM1Q86U86 1689 aa14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 IFT140Q96RY7 1462 aa14.43□□□□□ -0.1
CCDC88A-207ENST00000436346 ERBINQ96RT1 1412 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 DDX54Q8TDD1 881 aaKnown RBP14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 HSP90AA2PQ14568 343 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 CCDC173Q0VFZ6 552 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 CCDC7Q96M83 1385 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 KIF7Q2M1P5 1343 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 MPHOSPH8Q99549 860 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 CDC45O75419 566 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 TATP17735 454 aaPredicted RBP14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 C22orf23Q9BZE7 217 aa14.42□□□□□ -0.1
CCDC88A-207ENST00000436346 SIL1Q9H173 461 aa14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 CDK13Q14004 1512 aaKnown RBP14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 ZNF771Q7L3S4 317 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 KIF21AQ7Z4S6 1674 aa14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 KIF1BO60333 1816 aa14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 MAGEC2Q9UBF1 373 aaPredicted RBP14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 HIP1O00291 1037 aa14.41□□□□□ -0.1
CCDC88A-207ENST00000436346 MYO6Q9UM54 1294 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 KINO60870 393 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 SYCP1Q15431 976 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 MTHFSP49914 203 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 SPINK5Q9NQ38 1064 aaPredicted RBP14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 ERC1Q8IUD2 1116 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 SDF4Q9BRK5 362 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 CLASRPQ8N2M8 674 aaKnown RBP14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 C1orf115Q9H7X2 142 aa14.4□□□□□ -0.1
CCDC88A-207ENST00000436346 ATP2B1P20020 1258 aa14.39□□□□□ -0.11
CCDC88A-207ENST00000436346 CCDC158Q5M9N0 1113 aa14.39□□□□□ -0.11
CCDC88A-207ENST00000436346 SMC2O95347 1197 aa14.39□□□□□ -0.11
CCDC88A-207ENST00000436346 NUCB2P80303 420 aa14.39□□□□□ -0.11
CCDC88A-207ENST00000436346 PRKAR2BP31323 418 aa14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 GSE1Q14687 1217 aa14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 HMGXB3Q12766 1538 aa14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 SURF6O75683 361 aaKnown RBP14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 CDK19Q9BWU1 502 aa14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 TSHZ2Q9NRE2 1034 aa14.38□□□□□ -0.11
CCDC88A-207ENST00000436346 MATR3P43243 847 aaKnown RBP eCLIP14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 SPG7Q9UQ90 795 aa14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 BRD4O60885 1362 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 CEBPZQ03701 1054 aaKnown RBP14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 GNAI2P04899 355 aa14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 THEMISQ8N1K5 641 aaPredicted RBP14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 CDR1P51861 262 aa14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 GNAI3P08754 354 aa14.37□□□□□ -0.11
CCDC88A-207ENST00000436346 BRPF1P55201 1214 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 ZNF530Q6P9A1 599 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 MNS1Q8NEH6 495 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 RTEL1-TNFRSF6BF6WH68 1400 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 XPCQ01831 940 aaPredicted RBP14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 AFAP1Q8N556 730 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 PRDM11Q9NQV5 511 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 CCDC57Q2TAC2 916 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 NACAP1Q9BZK3 213 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 WDR97A6NE52 1622 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 LAMC3Q9Y6N6 1575 aa14.36□□□□□ -0.11
CCDC88A-207ENST00000436346 BTBD11A6QL63 1104 aa14.35□□□□□ -0.11
CCDC88A-207ENST00000436346 HDGFL1Q5TGJ6 251 aa14.35□□□□□ -0.11
CCDC88A-207ENST00000436346 CCDC69A6NI79 296 aa14.35□□□□□ -0.11
CCDC88A-207ENST00000436346 CCDC141Q6ZP82 1450 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms