RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 VPS72Q15906 364 aa24.79■■□□□ 1.56
CPSF4-203ENST00000430038 PAK3O75914 559 aaPredicted RBP24.77■■□□□ 1.56
CPSF4-203ENST00000430038 ACEP12821 1306 aa24.75■■□□□ 1.55
CPSF4-203ENST00000430038 ONECUT3O60422 494 aaPredicted RBP24.74■■□□□ 1.55
CPSF4-203ENST00000430038 POLR3AO14802 1390 aaPredicted RBP24.74■■□□□ 1.55
CPSF4-203ENST00000430038 NEUROD1Q13562 356 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 NBPF8Q3BBV2 869 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 NUTM2GQ5VZR2 741 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 SEPT12Q8IYM1 358 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 BTG4Q9NY30 223 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 CCDC61Q9Y6R9 512 aa24.73■■□□□ 1.55
CPSF4-203ENST00000430038 COL14A1Q05707 1796 aaKnown RBP24.72■■□□□ 1.55
CPSF4-203ENST00000430038 PLEKHG3A1L390 1219 aa24.72■■□□□ 1.55
CPSF4-203ENST00000430038 QRICH2Q9H0J4 1663 aa24.72■■□□□ 1.55
CPSF4-203ENST00000430038 TRPM1Q7Z4N2 1603 aa24.72■■□□□ 1.55
CPSF4-203ENST00000430038 CENPJQ9HC77 1338 aaPredicted RBP24.71■■□□□ 1.55
CPSF4-203ENST00000430038 CABP2Q9NPB3 220 aa24.71■■□□□ 1.55
CPSF4-203ENST00000430038 CCDC9Q9Y3X0 531 aaKnown RBP24.7■■□□□ 1.54
CPSF4-203ENST00000430038 PHRF1Q9P1Y6 1649 aaKnown RBP24.7■■□□□ 1.54
CPSF4-203ENST00000430038 CHRNA2Q15822 529 aa24.67■■□□□ 1.54
CPSF4-203ENST00000430038 KIAA0232Q92628 1395 aa24.66■■□□□ 1.54
CPSF4-203ENST00000430038 SRPK2P78362 688 aaKnown RBP24.65■■□□□ 1.54
CPSF4-203ENST00000430038 FAM98CQ17RN3 349 aaKnown RBP24.65■■□□□ 1.54
CPSF4-203ENST00000430038 PPIP5K1Q6PFW1 1433 aa24.64■■□□□ 1.54
CPSF4-203ENST00000430038 ZC3H6P61129 1189 aaKnown RBP24.64■■□□□ 1.54
CPSF4-203ENST00000430038 SRCAPQ6ZRS2 3230 aa24.63■■□□□ 1.53
CPSF4-203ENST00000430038 PRDM11Q9NQV5 511 aa24.63■■□□□ 1.53
CPSF4-203ENST00000430038 SPATA31A5Q5VU36 1347 aa24.62■■□□□ 1.53
CPSF4-203ENST00000430038 SPATA31A7Q8IWB4 1347 aa24.62■■□□□ 1.53
CPSF4-203ENST00000430038 KRT27Q7Z3Y8 459 aa24.61■■□□□ 1.53
CPSF4-203ENST00000430038 CCDC125Q86Z20 511 aa24.61■■□□□ 1.53
CPSF4-203ENST00000430038 CABP1Q9NZU7 370 aa24.61■■□□□ 1.53
CPSF4-203ENST00000430038 NRKQ7Z2Y5 1582 aa24.6■■□□□ 1.53
CPSF4-203ENST00000430038 DEFB132Q7Z7B7 95 aa24.6■■□□□ 1.53
CPSF4-203ENST00000430038 ABTB2Q8N961 1025 aa24.6■■□□□ 1.53
CPSF4-203ENST00000430038 FAM182BQ5T319 152 aa24.59■■□□□ 1.53
CPSF4-203ENST00000430038 BLMP54132 1417 aaPredicted RBP24.59■■□□□ 1.53
CPSF4-203ENST00000430038 USP19O94966 1318 aa24.58■■□□□ 1.52
CPSF4-203ENST00000430038 THSD7AQ9UPZ6 1657 aa24.57■■□□□ 1.52
CPSF4-203ENST00000430038 CAMTA1Q9Y6Y1 1673 aa24.57■■□□□ 1.52
CPSF4-203ENST00000430038 ROCK2O75116 1388 aaKnown RBP24.56■■□□□ 1.52
CPSF4-203ENST00000430038 STRN4Q9NRL3 753 aa24.55■■□□□ 1.52
CPSF4-203ENST00000430038 LMO7Q8WWI1 1683 aa24.55■■□□□ 1.52
CPSF4-203ENST00000430038 SPATA31A1Q5TZJ5 1347 aa24.55■■□□□ 1.52
CPSF4-203ENST00000430038 SSH2Q76I76 1423 aa24.54■■□□□ 1.52
CPSF4-203ENST00000430038 A0A0G2JS52 829 aa24.54■■□□□ 1.52
CPSF4-203ENST00000430038 MYT1Q01538 1121 aa24.54■■□□□ 1.52
CPSF4-203ENST00000430038 USP6P35125 1406 aa24.53■■□□□ 1.52
CPSF4-203ENST00000430038 GCP02774 474 aa24.52■■□□□ 1.52
CPSF4-203ENST00000430038 EVC2Q86UK5 1308 aa24.51■■□□□ 1.51
CPSF4-203ENST00000430038 PIK3C2AO00443 1686 aa24.5■■□□□ 1.51
CPSF4-203ENST00000430038 NLRP13Q86W25 1043 aa24.5■■□□□ 1.51
CPSF4-203ENST00000430038 CPDO75976 1380 aa24.5■■□□□ 1.51
CPSF4-203ENST00000430038 AKAP12Q02952 1782 aa24.49■■□□□ 1.51
CPSF4-203ENST00000430038 LARP1Q6PKG0 1096 aaKnown RBP24.49■■□□□ 1.51
CPSF4-203ENST00000430038 USP35Q9P2H5 1018 aa24.48■■□□□ 1.51
CPSF4-203ENST00000430038 ZRANB1Q9UGI0 708 aa24.48■■□□□ 1.51
CPSF4-203ENST00000430038 NLRP6P59044 892 aa24.47■■□□□ 1.51
CPSF4-203ENST00000430038 COL18A1P39060 1754 aa24.46■■□□□ 1.51
CPSF4-203ENST00000430038 SLIT3O75094 1523 aa24.45■■□□□ 1.51
CPSF4-203ENST00000430038 BRD4O60885 1362 aaPredicted RBP24.45■■□□□ 1.5
CPSF4-203ENST00000430038 EVA1CP58658 441 aa24.44■■□□□ 1.5
CPSF4-203ENST00000430038 CPSF1Q10570 1443 aaKnown RBP24.43■■□□□ 1.5
CPSF4-203ENST00000430038 RGPD5Q99666 1765 aa24.42■■□□□ 1.5
CPSF4-203ENST00000430038 TTC21BQ7Z4L5 1316 aa24.42■■□□□ 1.5
CPSF4-203ENST00000430038 TNS1Q9HBL0 1735 aaKnown RBP24.42■■□□□ 1.5
CPSF4-203ENST00000430038 CARD11Q9BXL7 1154 aa24.42■■□□□ 1.5
CPSF4-203ENST00000430038 COL5A2P05997 1499 aaPredicted RBP24.42■■□□□ 1.5
CPSF4-203ENST00000430038 SF3B2Q13435 895 aaKnown RBP24.41■■□□□ 1.5
CPSF4-203ENST00000430038 BARGINQ6ZT62 677 aa24.41■■□□□ 1.5
CPSF4-203ENST00000430038 AXIN2Q9Y2T1 843 aa24.41■■□□□ 1.5
CPSF4-203ENST00000430038 RGPD1P0DJD0 1748 aa24.41■■□□□ 1.5
CPSF4-203ENST00000430038 ZBTB7CA1YPR0 619 aa24.4■■□□□ 1.5
CPSF4-203ENST00000430038 EN1Q05925 392 aaPredicted RBP24.4■■□□□ 1.5
CPSF4-203ENST00000430038 CD163L1Q9NR16 1453 aa24.38■■□□□ 1.49
CPSF4-203ENST00000430038 ZNF692Q9BU19 519 aaPredicted RBP24.38■■□□□ 1.49
CPSF4-203ENST00000430038 SBNO2Q9Y2G9 1366 aa24.38■■□□□ 1.49
CPSF4-203ENST00000430038 MON2Q7Z3U7 1717 aa24.38■■□□□ 1.49
CPSF4-203ENST00000430038 TRIM26Q12899 539 aaPredicted RBP24.37■■□□□ 1.49
CPSF4-203ENST00000430038 TCP11L2Q8N4U5 519 aa24.37■■□□□ 1.49
CPSF4-203ENST00000430038 TONSLQ96HA7 1378 aa24.37■■□□□ 1.49
CPSF4-203ENST00000430038 AATKQ6ZMQ8 1374 aa24.36■■□□□ 1.49
CPSF4-203ENST00000430038 KTN1Q86UP2 1357 aaKnown RBP24.35■■□□□ 1.49
CPSF4-203ENST00000430038 TRIM37O94972 964 aa24.35■■□□□ 1.49
CPSF4-203ENST00000430038 BAG6P46379 1132 aa24.35■■□□□ 1.49
CPSF4-203ENST00000430038 ARHGEF25Q86VW2 580 aa24.34■■□□□ 1.49
CPSF4-203ENST00000430038 PARP4Q9UKK3 1724 aaKnown RBP24.33■■□□□ 1.49
CPSF4-203ENST00000430038 SOX12O15370 315 aa24.33■■□□□ 1.49
CPSF4-203ENST00000430038 SLC12A5Q9H2X9 1139 aa24.33■■□□□ 1.49
CPSF4-203ENST00000430038 CRB1P82279 1406 aa24.33■■□□□ 1.49
CPSF4-203ENST00000430038 EZH2Q15910 746 aaKnown RBP24.32■■□□□ 1.48
CPSF4-203ENST00000430038 FAM196AQ6ZSG2 479 aa24.32■■□□□ 1.48
CPSF4-203ENST00000430038 NFAT5O94916 1531 aa24.31■■□□□ 1.48
CPSF4-203ENST00000430038 PSDA5PKW4 1024 aaPredicted RBP24.31■■□□□ 1.48
CPSF4-203ENST00000430038 THRAP3Q9Y2W1 955 aaKnown RBP24.31■■□□□ 1.48
CPSF4-203ENST00000430038 TTC21AQ8NDW8 1320 aa24.31■■□□□ 1.48
CPSF4-203ENST00000430038 DISP2A7MBM2 1401 aa24.3■■□□□ 1.48
CPSF4-203ENST00000430038 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.3■■□□□ 1.48
CPSF4-203ENST00000430038 CAMKK2Q96RR4 588 aa24.3■■□□□ 1.48
CPSF4-203ENST00000430038 TESK2Q96S53 571 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms