RNA–Protein interactions for RNA: ENST00000428861.1

ATG4B-210, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-210ENST00000428861 BCL9LQ86UU0 1499 aa15.23■□□□□ 0.03
ATG4B-210ENST00000428861 NUTM2GQ5VZR2 741 aa15.23■□□□□ 0.03
ATG4B-210ENST00000428861 QTRT2Q9H974 415 aaKnown RBP15.23■□□□□ 0.03
ATG4B-210ENST00000428861 USP21Q9UK80 565 aa15.23■□□□□ 0.03
ATG4B-210ENST00000428861 ABCA3Q99758 1704 aa15.23■□□□□ 0.03
ATG4B-210ENST00000428861 MARF1Q9Y4F3 1742 aaKnown RBP15.21■□□□□ 0.03
ATG4B-210ENST00000428861 SSH2Q76I76 1423 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 FAM83GA6ND36 823 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 RXRBP28702 533 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 SLIT2O94813 1529 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 USP47Q96K76 1375 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 CRYBG1Q9Y4K1 1723 aa15.2■□□□□ 0.02
ATG4B-210ENST00000428861 ATRNO75882 1429 aa15.19■□□□□ 0.02
ATG4B-210ENST00000428861 USP6P35125 1406 aa15.19■□□□□ 0.02
ATG4B-210ENST00000428861 HAP1P54257 671 aaPredicted RBP15.19■□□□□ 0.02
ATG4B-210ENST00000428861 ATAD2Q6PL18 1390 aa15.19■□□□□ 0.02
ATG4B-210ENST00000428861 CPSF1Q10570 1443 aaKnown RBP15.17■□□□□ 0.02
ATG4B-210ENST00000428861 CD163L1Q9NR16 1453 aa15.17■□□□□ 0.02
ATG4B-210ENST00000428861 RBM6P78332 1123 aaKnown RBP15.17■□□□□ 0.02
ATG4B-210ENST00000428861 ABTB2Q8N961 1025 aa15.17■□□□□ 0.02
ATG4B-210ENST00000428861 SLC12A5Q9H2X9 1139 aa15.17■□□□□ 0.02
ATG4B-210ENST00000428861 TRPC5Q9UL62 973 aaPredicted RBP15.17■□□□□ 0.02
ATG4B-210ENST00000428861 UNC5CLQ8IV45 518 aa15.16■□□□□ 0.02
ATG4B-210ENST00000428861 RGS12O14924 1447 aa15.15■□□□□ 0.02
ATG4B-210ENST00000428861 USP19O94966 1318 aa15.15■□□□□ 0.02
ATG4B-210ENST00000428861 TTC21BQ7Z4L5 1316 aa15.15■□□□□ 0.02
ATG4B-210ENST00000428861 PHRF1Q9P1Y6 1649 aaKnown RBP15.14■□□□□ 0.01
ATG4B-210ENST00000428861 TMC1Q8TDI8 760 aa15.14■□□□□ 0.01
ATG4B-210ENST00000428861 AKAP12Q02952 1782 aa15.13■□□□□ 0.01
ATG4B-210ENST00000428861 BRD4O60885 1362 aaPredicted RBP15.13■□□□□ 0.01
ATG4B-210ENST00000428861 KIAA0232Q92628 1395 aa15.13■□□□□ 0.01
ATG4B-210ENST00000428861 PLCH1Q4KWH8 1693 aa15.13■□□□□ 0.01
ATG4B-210ENST00000428861 ZC3H6P61129 1189 aaKnown RBP15.13■□□□□ 0.01
ATG4B-210ENST00000428861 PUS7Q96PZ0 661 aaKnown RBP15.13■□□□□ 0.01
ATG4B-210ENST00000428861 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
ATG4B-210ENST00000428861 CDK12Q9NYV4 1490 aaPredicted RBP15.13■□□□□ 0.01
ATG4B-210ENST00000428861 NRKQ7Z2Y5 1582 aa15.12■□□□□ 0.01
ATG4B-210ENST00000428861 CHRNA2Q15822 529 aa15.12■□□□□ 0.01
ATG4B-210ENST00000428861 GJD4Q96KN9 370 aaPredicted RBP15.12■□□□□ 0.01
ATG4B-210ENST00000428861 BTG4Q9NY30 223 aa15.12■□□□□ 0.01
ATG4B-210ENST00000428861 ZRANB1Q9UGI0 708 aa15.12■□□□□ 0.01
ATG4B-210ENST00000428861 PIK3C2AO00443 1686 aa15.12■□□□□ 0.01
ATG4B-210ENST00000428861 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.12■□□□□ 0.01
ATG4B-210ENST00000428861 KTN1Q86UP2 1357 aaKnown RBP15.11■□□□□ 0.01
ATG4B-210ENST00000428861 GLI3P10071 1580 aa15.11■□□□□ 0.01
ATG4B-210ENST00000428861 NLRP6P59044 892 aa15.11■□□□□ 0.01
ATG4B-210ENST00000428861 NLRP13Q86W25 1043 aa15.11■□□□□ 0.01
ATG4B-210ENST00000428861 PRDM11Q9NQV5 511 aa15.11■□□□□ 0.01
ATG4B-210ENST00000428861 A0A1W2PP64 1363 aa15.11■□□□□ 0.01
ATG4B-210ENST00000428861 NRAPQ86VF7 1730 aa15.1■□□□□ 0.01
ATG4B-210ENST00000428861 GCP02774 474 aa15.1■□□□□ 0.01
ATG4B-210ENST00000428861 VPS72Q15906 364 aa15.1■□□□□ 0.01
ATG4B-210ENST00000428861 COL14A1Q05707 1796 aaKnown RBP15.1■□□□□ 0.01
ATG4B-210ENST00000428861 MON2Q7Z3U7 1717 aa15.09■□□□□ 0.01
ATG4B-210ENST00000428861 NWD2Q9ULI1 1742 aa15.09■□□□□ 0.01
ATG4B-210ENST00000428861 TMF1P82094 1093 aa15.09■□□□□ 0.01
ATG4B-210ENST00000428861 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.09■□□□□ 0.01
ATG4B-210ENST00000428861 SLIT3O75094 1523 aa15.08■□□□□ 0.01
ATG4B-210ENST00000428861 NME9Q86XW9 330 aa15.08■□□□□ 0
ATG4B-210ENST00000428861 TTC21AQ8NDW8 1320 aa15.08■□□□□ 0
ATG4B-210ENST00000428861 CPDO75976 1380 aa15.08■□□□□ 0
ATG4B-210ENST00000428861 HSPA5P11021 654 aaKnown RBP15.07■□□□□ 0
ATG4B-210ENST00000428861 SLC24A1O60721 1099 aa15.06■□□□□ 0
ATG4B-210ENST00000428861 HDGFL2Q7Z4V5 671 aaPredicted RBP15.06■□□□□ 0
ATG4B-210ENST00000428861 CAMTA1Q9Y6Y1 1673 aa15.06■□□□□ 0
ATG4B-210ENST00000428861 TERF2IPQ9NYB0 399 aa15.05■□□□□ -0
ATG4B-210ENST00000428861 CCDC9Q9Y3X0 531 aaKnown RBP15.05■□□□□ -0
ATG4B-210ENST00000428861 EDC4Q6P2E9 1401 aaKnown RBP15.05■□□□□ -0
ATG4B-210ENST00000428861 LMO7Q8WWI1 1683 aa15.04■□□□□ -0
ATG4B-210ENST00000428861 USP31Q70CQ4 1352 aa15.04■□□□□ -0
ATG4B-210ENST00000428861 NINLQ9Y2I6 1382 aa15.04■□□□□ -0
ATG4B-210ENST00000428861 SOX12O15370 315 aa15.04■□□□□ -0
ATG4B-210ENST00000428861 UPF1Q92900 1129 aaKnown RBP eCLIP15.04■□□□□ -0
ATG4B-210ENST00000428861 STRN4Q9NRL3 753 aa15.04■□□□□ -0
ATG4B-210ENST00000428861 ANKRD36BQ8N2N9 1353 aa15.03■□□□□ -0
ATG4B-210ENST00000428861 SPATA31A5Q5VU36 1347 aa15.03■□□□□ -0
ATG4B-210ENST00000428861 SPATA31A7Q8IWB4 1347 aa15.03■□□□□ -0
ATG4B-210ENST00000428861 ZBTB7CA1YPR0 619 aa15.03■□□□□ -0
ATG4B-210ENST00000428861 ONECUT3O60422 494 aaPredicted RBP15.03■□□□□ -0
ATG4B-210ENST00000428861 EIF4G2P78344 907 aaKnown RBP eCLIP15.03■□□□□ -0
ATG4B-210ENST00000428861 NFAT5O94916 1531 aa15.02■□□□□ -0
ATG4B-210ENST00000428861 FAM98CQ17RN3 349 aaKnown RBP15.02■□□□□ -0
ATG4B-210ENST00000428861 LARP1Q6PKG0 1096 aaKnown RBP15.02■□□□□ -0
ATG4B-210ENST00000428861 ARHGEF25Q86VW2 580 aa15.02■□□□□ -0
ATG4B-210ENST00000428861 SEPT12Q8IYM1 358 aa15.02■□□□□ -0
ATG4B-210ENST00000428861 AXIN2Q9Y2T1 843 aa15.02■□□□□ -0
ATG4B-210ENST00000428861 C11orf95C9JLR9 678 aaPredicted RBP15.01□□□□□ -0.01
ATG4B-210ENST00000428861 COL18A1P39060 1754 aa15.01□□□□□ -0.01
ATG4B-210ENST00000428861 OVOS2A0A0J9YW53 1432 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 OVOS2Q6IE36 1432 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 AATKQ6ZMQ8 1374 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 SPATA31A1Q5TZJ5 1347 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 CDCA8Q53HL2 280 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 CARD14Q9BXL6 1004 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 COL5A2P05997 1499 aaPredicted RBP15□□□□□ -0.01
ATG4B-210ENST00000428861 MYOM1P52179 1685 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 USP54Q70EL1 1684 aa15□□□□□ -0.01
ATG4B-210ENST00000428861 FBLN1P23142 703 aa14.99□□□□□ -0.01
ATG4B-210ENST00000428861 KCNH5Q8NCM2 988 aa14.99□□□□□ -0.01
ATG4B-210ENST00000428861 EP400Q96L91 3159 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms