RNA–Protein interactions for RNA: ENST00000428574.6

NR1I3-209, Transcript of nuclear receptor subfamily 1 group I member 3, humanhuman

TSL 1 (best) BASIC

Gene NR1I3, Length 1,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1I3-209ENST00000428574 USP31Q70CQ4 1352 aa12.18□□□□□ -0.46
NR1I3-209ENST00000428574 CCDC184Q52MB2 194 aa12.18□□□□□ -0.46
NR1I3-209ENST00000428574 OVOS2A0A0J9YW53 1432 aa12.18□□□□□ -0.46
NR1I3-209ENST00000428574 OVOS2Q6IE36 1432 aa12.18□□□□□ -0.46
NR1I3-209ENST00000428574 STRCP1A6NGW2 1772 aa12.18□□□□□ -0.46
NR1I3-209ENST00000428574 TTC21BQ7Z4L5 1316 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 KCNA4P22459 653 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 NCBP3Q53F19 620 aaKnown RBP12.17□□□□□ -0.46
NR1I3-209ENST00000428574 NGEFQ8N5V2 710 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 CFAP53Q96M91 514 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 BLMP54132 1417 aaPredicted RBP12.17□□□□□ -0.46
NR1I3-209ENST00000428574 MST1RQ04912 1400 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 MSH6P52701 1360 aa12.17□□□□□ -0.46
NR1I3-209ENST00000428574 ZBED9Q6R2W3 1325 aa12.16□□□□□ -0.46
NR1I3-209ENST00000428574 C1orf167Q5SNV9 1468 aa12.16□□□□□ -0.46
NR1I3-209ENST00000428574 CADPS2Q86UW7 1296 aa12.16□□□□□ -0.46
NR1I3-209ENST00000428574 PNPLA6Q8IY17 1366 aa12.16□□□□□ -0.46
NR1I3-209ENST00000428574 PHF8Q9UPP1 1060 aa12.15□□□□□ -0.46
NR1I3-209ENST00000428574 KIF24Q5T7B8 1368 aa12.15□□□□□ -0.46
NR1I3-209ENST00000428574 CDK12Q9NYV4 1490 aaPredicted RBP12.14□□□□□ -0.47
NR1I3-209ENST00000428574 WDR43Q15061 677 aaKnown RBP eCLIP12.14□□□□□ -0.47
NR1I3-209ENST00000428574 C14orf37Q86TY3 774 aa12.14□□□□□ -0.47
NR1I3-209ENST00000428574 FAM9BQ8IZU0 186 aa12.14□□□□□ -0.47
NR1I3-209ENST00000428574 NGDNQ8NEJ9 315 aaKnown RBP12.14□□□□□ -0.47
NR1I3-209ENST00000428574 COG3Q96JB2 828 aa12.14□□□□□ -0.47
NR1I3-209ENST00000428574 YTHDC1Q96MU7 727 aaKnown RBP12.14□□□□□ -0.47
NR1I3-209ENST00000428574 ATF3P18847 181 aa12.13□□□□□ -0.47
NR1I3-209ENST00000428574 GGNBP2Q9H3C7 697 aa12.13□□□□□ -0.47
NR1I3-209ENST00000428574 HNRNPUQ00839 825 aaKnown RBP eCLIP12.12□□□□□ -0.47
NR1I3-209ENST00000428574 COL3A1P02461 1466 aaPredicted RBP12.12□□□□□ -0.47
NR1I3-209ENST00000428574 RGPD8O14715 1765 aaPredicted RBP12.12□□□□□ -0.47
NR1I3-209ENST00000428574 PIK3C2AO00443 1686 aa12.11□□□□□ -0.47
NR1I3-209ENST00000428574 SHPRHQ149N8 1683 aa12.11□□□□□ -0.47
NR1I3-209ENST00000428574 CNGB1Q14028 1251 aaPredicted RBP12.11□□□□□ -0.47
NR1I3-209ENST00000428574 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.11□□□□□ -0.47
NR1I3-209ENST00000428574 XIRP1Q702N8 1843 aaKnown RBP12.1□□□□□ -0.47
NR1I3-209ENST00000428574 MTHFSP49914 203 aa12.1□□□□□ -0.47
NR1I3-209ENST00000428574 NME9Q86XW9 330 aa12.1□□□□□ -0.47
NR1I3-209ENST00000428574 NUDCQ9Y266 331 aa12.1□□□□□ -0.47
NR1I3-209ENST00000428574 SBNO1A3KN83 1393 aa12.09□□□□□ -0.47
NR1I3-209ENST00000428574 ESCO1Q5FWF5 840 aa12.09□□□□□ -0.47
NR1I3-209ENST00000428574 PMFBP1Q8TBY8 1022 aa12.09□□□□□ -0.47
NR1I3-209ENST00000428574 ZNF335Q9H4Z2 1342 aaPredicted RBP12.09□□□□□ -0.47
NR1I3-209ENST00000428574 RTL1A6NKG5 1358 aa12.08□□□□□ -0.48
NR1I3-209ENST00000428574 NUTM2FA1L443 756 aa12.08□□□□□ -0.48
NR1I3-209ENST00000428574 POLKQ9UBT6 870 aa12.08□□□□□ -0.48
NR1I3-209ENST00000428574 TRPM3Q9HCF6 1732 aaPredicted RBP12.08□□□□□ -0.48
NR1I3-209ENST00000428574 NPHP3Q7Z494 1330 aa12.08□□□□□ -0.48
NR1I3-209ENST00000428574 PHRF1Q9P1Y6 1649 aaKnown RBP12.08□□□□□ -0.48
NR1I3-209ENST00000428574 PDE3BQ13370 1112 aa12.07□□□□□ -0.48
NR1I3-209ENST00000428574 PNNQ9H307 717 aaKnown RBP12.07□□□□□ -0.48
NR1I3-209ENST00000428574 SLIT3O75094 1523 aa12.06□□□□□ -0.48
NR1I3-209ENST00000428574 PSME1Q06323 249 aa12.06□□□□□ -0.48
NR1I3-209ENST00000428574 ADAMTS8Q9UP79 889 aa12.06□□□□□ -0.48
NR1I3-209ENST00000428574 MED1Q15648 1581 aaPredicted RBP12.05□□□□□ -0.48
NR1I3-209ENST00000428574 LTBP4Q8N2S1 1624 aa12.05□□□□□ -0.48
NR1I3-209ENST00000428574 KCNH5Q8NCM2 988 aa12.05□□□□□ -0.48
NR1I3-209ENST00000428574 MARF1Q9Y4F3 1742 aaKnown RBP12.05□□□□□ -0.48
NR1I3-209ENST00000428574 ABCC6O95255 1503 aa12.05□□□□□ -0.48
NR1I3-209ENST00000428574 USP19O94966 1318 aa12.05□□□□□ -0.48
NR1I3-209ENST00000428574 FLT4P35916 1363 aa12.05□□□□□ -0.48
NR1I3-209ENST00000428574 ALS2Q96Q42 1657 aa12.04□□□□□ -0.48
NR1I3-209ENST00000428574 DIAPH1O60610 1272 aaKnown RBP12.04□□□□□ -0.48
NR1I3-209ENST00000428574 TNNT2P45379 298 aaPredicted RBP12.04□□□□□ -0.48
NR1I3-209ENST00000428574 ARHGEF10O15013 1369 aa12.04□□□□□ -0.48
NR1I3-209ENST00000428574 IQSEC2Q5JU85 1478 aa12.03□□□□□ -0.48
NR1I3-209ENST00000428574 PXDNQ92626 1479 aa12.03□□□□□ -0.48
NR1I3-209ENST00000428574 NFAT5O94916 1531 aa12.03□□□□□ -0.48
NR1I3-209ENST00000428574 NLRP6P59044 892 aa12.03□□□□□ -0.48
NR1I3-209ENST00000428574 RBM33Q96EV2 1170 aaKnown RBP12.03□□□□□ -0.48
NR1I3-209ENST00000428574 ORAI2Q96SN7 254 aa12.03□□□□□ -0.48
NR1I3-209ENST00000428574 ABTB2Q8N961 1025 aa12.02□□□□□ -0.49
NR1I3-209ENST00000428574 RUNDC1Q96C34 613 aa12.02□□□□□ -0.49
NR1I3-209ENST00000428574 MAP2P11137 1827 aaKnown RBP12.02□□□□□ -0.49
NR1I3-209ENST00000428574 TNS3Q68CZ2 1445 aa12.02□□□□□ -0.49
NR1I3-209ENST00000428574 FCHSD2O94868 740 aa12.01□□□□□ -0.49
NR1I3-209ENST00000428574 CCDC27Q2M243 656 aa12.01□□□□□ -0.49
NR1I3-209ENST00000428574 KRT28Q7Z3Y7 464 aa12.01□□□□□ -0.49
NR1I3-209ENST00000428574 SLAIN2Q9P270 581 aa12.01□□□□□ -0.49
NR1I3-209ENST00000428574 FOXO3O43524 673 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 NPM3O75607 178 aaKnown RBP12□□□□□ -0.49
NR1I3-209ENST00000428574 BRINP3Q76B58 766 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 ZRANB1Q9UGI0 708 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 EMILIN1Q9Y6C2 1016 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 ZNF521Q96K83 1311 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 NHSL1Q5SYE7 1610 aa12□□□□□ -0.49
NR1I3-209ENST00000428574 PAK3O75914 559 aaPredicted RBP11.99□□□□□ -0.49
NR1I3-209ENST00000428574 IL13P35225 146 aa11.99□□□□□ -0.49
NR1I3-209ENST00000428574 SOS2Q07890 1332 aaPredicted RBP11.99□□□□□ -0.49
NR1I3-209ENST00000428574 MAP3K19Q56UN5 1328 aa11.99□□□□□ -0.49
NR1I3-209ENST00000428574 PLEKHG2Q9H7P9 1386 aa11.99□□□□□ -0.49
NR1I3-209ENST00000428574 RGPD1P0DJD0 1748 aa11.99□□□□□ -0.49
NR1I3-209ENST00000428574 PEAK1Q9H792 1746 aa11.99□□□□□ -0.49
NR1I3-209ENST00000428574 SPATA31A3Q5VYP0 1347 aa11.98□□□□□ -0.49
NR1I3-209ENST00000428574 U2AF1L5P0DN76 240 aaPredicted RBP11.98□□□□□ -0.49
NR1I3-209ENST00000428574 U2AF1Q01081 240 aaKnown RBP eCLIP11.98□□□□□ -0.49
NR1I3-209ENST00000428574 AHDC1Q5TGY3 1603 aaPredicted RBP11.97□□□□□ -0.49
NR1I3-209ENST00000428574 NEFMP07197 916 aa11.97□□□□□ -0.49
NR1I3-209ENST00000428574 POTEDQ86YR6 584 aa11.97□□□□□ -0.49
NR1I3-209ENST00000428574 PLEKHF1Q96S99 279 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms