RNA–Protein interactions for RNA: ENST00000425056.5

GPC1-203, Transcript of glypican 1, humanhuman

TSL 5

Gene GPC1, Length 1,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-203ENST00000425056 NBPF1Q3BBV0 1214 aa25.71■■□□□ 1.71
GPC1-203ENST00000425056 CDK19Q9BWU1 502 aa25.71■■□□□ 1.71
GPC1-203ENST00000425056 POLR3AO14802 1390 aaPredicted RBP25.7■■□□□ 1.71
GPC1-203ENST00000425056 ONECUT3O60422 494 aaPredicted RBP25.69■■□□□ 1.7
GPC1-203ENST00000425056 SEPT12Q8IYM1 358 aa25.69■■□□□ 1.7
GPC1-203ENST00000425056 PAK3O75914 559 aaPredicted RBP25.68■■□□□ 1.7
GPC1-203ENST00000425056 CCDC9Q9Y3X0 531 aaKnown RBP25.68■■□□□ 1.7
GPC1-203ENST00000425056 BLMP54132 1417 aaPredicted RBP25.68■■□□□ 1.7
GPC1-203ENST00000425056 QRICH2Q9H0J4 1663 aa25.68■■□□□ 1.7
GPC1-203ENST00000425056 BTG4Q9NY30 223 aa25.67■■□□□ 1.7
GPC1-203ENST00000425056 CCDC61Q9Y6R9 512 aa25.66■■□□□ 1.7
GPC1-203ENST00000425056 ACEP12821 1306 aa25.63■■□□□ 1.69
GPC1-203ENST00000425056 CENPJQ9HC77 1338 aaPredicted RBP25.63■■□□□ 1.69
GPC1-203ENST00000425056 TRPM1Q7Z4N2 1603 aa25.63■■□□□ 1.69
GPC1-203ENST00000425056 PLEKHG3A1L390 1219 aa25.63■■□□□ 1.69
GPC1-203ENST00000425056 PRDM11Q9NQV5 511 aa25.62■■□□□ 1.69
GPC1-203ENST00000425056 L3MBTL2Q969R5 705 aa25.61■■□□□ 1.69
GPC1-203ENST00000425056 THSD7AQ9UPZ6 1657 aa25.61■■□□□ 1.69
GPC1-203ENST00000425056 NRKQ7Z2Y5 1582 aa25.61■■□□□ 1.69
GPC1-203ENST00000425056 KIAA0232Q92628 1395 aa25.6■■□□□ 1.69
GPC1-203ENST00000425056 NBPF8Q3BBV2 869 aa25.6■■□□□ 1.69
GPC1-203ENST00000425056 KRT27Q7Z3Y8 459 aa25.6■■□□□ 1.69
GPC1-203ENST00000425056 SRCAPQ6ZRS2 3230 aa25.59■■□□□ 1.69
GPC1-203ENST00000425056 PPIP5K1Q6PFW1 1433 aa25.59■■□□□ 1.69
GPC1-203ENST00000425056 SPATA31A5Q5VU36 1347 aa25.59■■□□□ 1.69
GPC1-203ENST00000425056 SPATA31A7Q8IWB4 1347 aa25.59■■□□□ 1.69
GPC1-203ENST00000425056 FAM98CQ17RN3 349 aaKnown RBP25.58■■□□□ 1.69
GPC1-203ENST00000425056 SRPK2P78362 688 aaKnown RBP25.57■■□□□ 1.68
GPC1-203ENST00000425056 ZRANB1Q9UGI0 708 aa25.57■■□□□ 1.68
GPC1-203ENST00000425056 A0A0G2JS52 829 aa25.55■■□□□ 1.68
GPC1-203ENST00000425056 MYT1Q01538 1121 aa25.55■■□□□ 1.68
GPC1-203ENST00000425056 NUTM2GQ5VZR2 741 aa25.54■■□□□ 1.68
GPC1-203ENST00000425056 SIN3AQ96ST3 1273 aa25.54■■□□□ 1.68
GPC1-203ENST00000425056 USP19O94966 1318 aa25.54■■□□□ 1.68
GPC1-203ENST00000425056 LMO7Q8WWI1 1683 aa25.53■■□□□ 1.68
GPC1-203ENST00000425056 CABP2Q9NPB3 220 aa25.53■■□□□ 1.68
GPC1-203ENST00000425056 BRD4O60885 1362 aaPredicted RBP25.53■■□□□ 1.68
GPC1-203ENST00000425056 SF3B2Q13435 895 aaKnown RBP25.52■■□□□ 1.68
GPC1-203ENST00000425056 CHRNA2Q15822 529 aa25.52■■□□□ 1.68
GPC1-203ENST00000425056 DEFB132Q7Z7B7 95 aa25.51■■□□□ 1.67
GPC1-203ENST00000425056 ABTB2Q8N961 1025 aa25.51■■□□□ 1.67
GPC1-203ENST00000425056 CPDO75976 1380 aa25.51■■□□□ 1.67
GPC1-203ENST00000425056 RGPD1P0DJD0 1748 aa25.5■■□□□ 1.67
GPC1-203ENST00000425056 ZC3H6P61129 1189 aaKnown RBP25.5■■□□□ 1.67
GPC1-203ENST00000425056 SPATA31A1Q5TZJ5 1347 aa25.5■■□□□ 1.67
GPC1-203ENST00000425056 USP6P35125 1406 aa25.49■■□□□ 1.67
GPC1-203ENST00000425056 ROCK2O75116 1388 aaKnown RBP25.49■■□□□ 1.67
GPC1-203ENST00000425056 CAMTA1Q9Y6Y1 1673 aa25.48■■□□□ 1.67
GPC1-203ENST00000425056 SSH2Q76I76 1423 aa25.47■■□□□ 1.67
GPC1-203ENST00000425056 EVC2Q86UK5 1308 aa25.46■■□□□ 1.67
GPC1-203ENST00000425056 NEUROD1Q13562 356 aa25.46■■□□□ 1.67
GPC1-203ENST00000425056 NLRP13Q86W25 1043 aa25.46■■□□□ 1.67
GPC1-203ENST00000425056 STRN4Q9NRL3 753 aa25.46■■□□□ 1.67
GPC1-203ENST00000425056 SLIT3O75094 1523 aa25.45■■□□□ 1.66
GPC1-203ENST00000425056 TNS1Q9HBL0 1735 aaKnown RBP25.45■■□□□ 1.66
GPC1-203ENST00000425056 PIK3C2AO00443 1686 aa25.45■■□□□ 1.66
GPC1-203ENST00000425056 CABP1Q9NZU7 370 aa25.44■■□□□ 1.66
GPC1-203ENST00000425056 AKAP12Q02952 1782 aa25.43■■□□□ 1.66
GPC1-203ENST00000425056 GCP02774 474 aa25.42■■□□□ 1.66
GPC1-203ENST00000425056 BAG6P46379 1132 aa25.42■■□□□ 1.66
GPC1-203ENST00000425056 DISP2A7MBM2 1401 aa25.4■■□□□ 1.66
GPC1-203ENST00000425056 FAM182BQ5T319 152 aa25.4■■□□□ 1.66
GPC1-203ENST00000425056 COL5A2P05997 1499 aaPredicted RBP25.4■■□□□ 1.66
GPC1-203ENST00000425056 BARGINQ6ZT62 677 aa25.39■■□□□ 1.66
GPC1-203ENST00000425056 EVA1CP58658 441 aa25.38■■□□□ 1.65
GPC1-203ENST00000425056 SBNO2Q9Y2G9 1366 aa25.38■■□□□ 1.65
GPC1-203ENST00000425056 LARP1Q6PKG0 1096 aaKnown RBP25.37■■□□□ 1.65
GPC1-203ENST00000425056 NLRP6P59044 892 aa25.36■■□□□ 1.65
GPC1-203ENST00000425056 USP35Q9P2H5 1018 aa25.36■■□□□ 1.65
GPC1-203ENST00000425056 PARP4Q9UKK3 1724 aaKnown RBP25.36■■□□□ 1.65
GPC1-203ENST00000425056 COL18A1P39060 1754 aa25.35■■□□□ 1.65
GPC1-203ENST00000425056 AATKQ6ZMQ8 1374 aa25.34■■□□□ 1.65
GPC1-203ENST00000425056 TCP11L2Q8N4U5 519 aa25.34■■□□□ 1.65
GPC1-203ENST00000425056 CPSF1Q10570 1443 aaKnown RBP25.34■■□□□ 1.65
GPC1-203ENST00000425056 MON2Q7Z3U7 1717 aa25.34■■□□□ 1.65
GPC1-203ENST00000425056 FAM196AQ6ZSG2 479 aa25.33■■□□□ 1.65
GPC1-203ENST00000425056 LRP5O75197 1615 aa25.33■■□□□ 1.65
GPC1-203ENST00000425056 CRB1P82279 1406 aa25.32■■□□□ 1.64
GPC1-203ENST00000425056 ZNF692Q9BU19 519 aaPredicted RBP25.32■■□□□ 1.64
GPC1-203ENST00000425056 THRAP3Q9Y2W1 955 aaKnown RBP25.32■■□□□ 1.64
GPC1-203ENST00000425056 EN1Q05925 392 aaPredicted RBP25.31■■□□□ 1.64
GPC1-203ENST00000425056 TTC21BQ7Z4L5 1316 aa25.31■■□□□ 1.64
GPC1-203ENST00000425056 TTC21AQ8NDW8 1320 aa25.3■■□□□ 1.64
GPC1-203ENST00000425056 TONSLQ96HA7 1378 aa25.29■■□□□ 1.64
GPC1-203ENST00000425056 WNK3Q9BYP7 1800 aa25.28■■□□□ 1.64
GPC1-203ENST00000425056 LRRC37A3O60309 1634 aa25.27■■□□□ 1.64
GPC1-203ENST00000425056 USP54Q70EL1 1684 aa25.27■■□□□ 1.64
GPC1-203ENST00000425056 PDE3BQ13370 1112 aa25.27■■□□□ 1.64
GPC1-203ENST00000425056 CARD11Q9BXL7 1154 aa25.27■■□□□ 1.64
GPC1-203ENST00000425056 NFAT5O94916 1531 aa25.27■■□□□ 1.64
GPC1-203ENST00000425056 TRIM37O94972 964 aa25.26■■□□□ 1.63
GPC1-203ENST00000425056 KTN1Q86UP2 1357 aaKnown RBP25.26■■□□□ 1.63
GPC1-203ENST00000425056 ZBTB7CA1YPR0 619 aa25.25■■□□□ 1.63
GPC1-203ENST00000425056 RREB1Q92766 1687 aa25.25■■□□□ 1.63
GPC1-203ENST00000425056 RGPD5Q99666 1765 aa25.24■■□□□ 1.63
GPC1-203ENST00000425056 PEAK1Q9H792 1746 aa25.24■■□□□ 1.63
GPC1-203ENST00000425056 ABCC6O95255 1503 aa25.24■■□□□ 1.63
GPC1-203ENST00000425056 CD163L1Q9NR16 1453 aa25.24■■□□□ 1.63
GPC1-203ENST00000425056 PARD3Q8TEW0 1356 aa25.24■■□□□ 1.63
GPC1-203ENST00000425056 KCNH5Q8NCM2 988 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms